Wall clock time and date at job start Tue Mar 31 2020 23:18:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 N 1.31965 * 120.48827 * 2 1 4 4 C 1.32708 * 120.89002 * 180.27938 * 3 2 1 5 5 C 1.48183 * 119.04663 * 179.74795 * 4 3 2 6 6 C 1.39443 * 120.13566 * 359.70427 * 5 4 3 7 7 C 1.37984 * 119.86600 * 179.71750 * 6 5 4 8 8 C 1.38341 * 120.13237 * 0.56205 * 7 6 5 9 9 C 1.38335 * 120.26610 * 359.71758 * 8 7 6 10 10 C 1.37989 * 120.13367 * 0.02562 * 9 8 7 11 11 N 1.32732 * 121.89864 * 359.73328 * 4 3 2 12 12 C 1.31926 * 120.88975 * 359.97438 * 11 4 3 13 13 C 1.40070 * 120.49356 * 179.75244 * 2 1 3 14 14 C 1.47692 * 120.85775 * 0.02562 * 13 2 1 15 15 O 1.21570 * 119.99807 * 334.04507 * 14 13 2 16 16 N 1.34773 * 120.00326 * 154.04876 * 14 13 2 17 17 C 1.47585 * 134.49311 * 174.28069 * 16 14 13 18 18 C 1.53948 * 86.11679 * 155.35986 * 17 16 14 19 19 O 1.42902 * 113.74028 * 269.15821 * 18 17 16 20 20 C 1.50690 * 113.74526 * 137.95157 * 18 17 16 21 21 H 1.08000 * 119.99812 * 1.92669 * 20 18 17 22 22 C 1.37876 * 120.00315 * 182.20080 * 20 18 17 23 23 N 1.31511 * 119.99825 * 359.72461 * 22 20 18 24 24 Si 1.86798 * 120.00052 * 179.72640 * 22 20 18 25 25 H 1.48501 * 109.47198 * 89.99996 * 24 22 20 26 26 H 1.48500 * 109.46960 * 209.99820 * 24 22 20 27 27 H 1.48497 * 109.47259 * 329.99609 * 24 22 20 28 28 C 1.47809 * 134.45402 * 354.15104 * 16 14 13 29 29 H 1.08999 * 109.47175 * 273.71216 * 1 2 3 30 30 H 1.09000 * 109.47523 * 33.70888 * 1 2 3 31 31 H 1.08997 * 109.47146 * 153.71499 * 1 2 3 32 32 H 1.08001 * 120.06803 * 359.97438 * 6 5 4 33 33 H 1.08008 * 119.93518 * 180.27976 * 7 6 5 34 34 H 1.08007 * 119.86473 * 179.73938 * 8 7 6 35 35 H 1.08006 * 119.93833 * 180.02562 * 9 8 7 36 36 H 1.08000 * 120.06986 * 180.02562 * 10 9 8 37 37 H 1.08004 * 120.49482 * 180.02562 * 12 11 4 38 38 H 1.08994 * 113.76535 * 41.05883 * 17 16 14 39 39 H 1.09002 * 113.76848 * 269.65599 * 17 16 14 40 40 H 0.96703 * 113.99790 * 178.07602 * 19 18 17 41 41 H 0.97003 * 120.00300 * 180.02562 * 23 22 20 42 42 H 1.09002 * 113.77433 * 90.37774 * 28 16 14 43 43 H 1.08998 * 113.83822 * 318.91345 * 28 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1765 1.1372 0.0000 4 6 3.5036 1.1465 -0.0056 5 6 4.2139 2.4470 -0.0110 6 6 3.4911 3.6394 -0.0165 7 6 4.1583 4.8473 -0.0157 8 6 5.5413 4.8767 -0.0212 9 6 6.2639 3.6971 -0.0216 10 6 5.6080 2.4830 -0.0171 11 7 4.2129 0.0246 -0.0061 12 6 3.6179 -1.1529 -0.0005 13 6 2.2178 -1.2070 0.0052 14 6 1.5097 -2.5031 0.0102 15 8 0.3873 -2.5807 0.4709 16 7 2.1077 -3.5997 -0.4958 17 6 1.7586 -5.0323 -0.5585 18 6 2.6801 -5.0956 -1.7901 19 8 2.0049 -4.8565 -3.0266 20 6 3.5595 -6.3187 -1.8278 21 1 3.4811 -7.0643 -1.0504 22 6 4.4682 -6.4832 -2.8516 23 7 4.5637 -5.5753 -3.7982 24 14 5.5636 -7.9957 -2.8941 25 1 4.8863 -9.0762 -3.6550 26 1 6.8499 -7.6568 -3.5543 27 1 5.8256 -8.4563 -1.5069 28 6 3.3759 -3.8494 -1.2129 29 1 -0.3633 0.0665 1.0255 30 1 -0.3634 0.8549 -0.5703 31 1 -0.3633 -0.9214 -0.4551 32 1 2.4113 3.6177 -0.0172 33 1 3.5995 5.7716 -0.0154 34 1 6.0591 5.8246 -0.0248 35 1 7.3435 3.7262 -0.0255 36 1 6.1731 1.5627 -0.0170 37 1 4.2013 -2.0618 -0.0005 38 1 0.7090 -5.2191 -0.7850 39 1 2.1212 -5.6104 0.2915 40 1 2.5853 -4.8663 -3.8000 41 1 5.2027 -5.6911 -4.5187 42 1 4.2145 -4.0793 -0.5556 43 1 3.6150 -3.0937 -1.9611 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000186843495.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:18:02 Heat of formation + Delta-G solvation = 30.123526 kcal Electronic energy + Delta-G solvation = -28371.253914 eV Core-core repulsion = 24382.959302 eV Total energy + Delta-G solvation = -3988.294612 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 339.137 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -41.30352 -39.59552 -38.91735 -37.47253 -34.56803 -33.99517 -33.34930 -32.29621 -31.14248 -30.59300 -29.37136 -27.91563 -25.74022 -25.53340 -24.74236 -23.47808 -22.26752 -21.59552 -20.41142 -18.81703 -17.96773 -17.59218 -17.38811 -16.59581 -16.06806 -15.79105 -15.29770 -15.11315 -14.87093 -14.73074 -14.49668 -14.20782 -13.75683 -13.56661 -13.40044 -13.17649 -13.15691 -12.74615 -12.65391 -12.60465 -12.21461 -11.92855 -11.68186 -11.63028 -11.46428 -11.26417 -11.16983 -11.11364 -10.62334 -10.56341 -10.37912 -9.97350 -9.72891 -9.35868 -9.27212 -9.13048 -8.83847 -8.65501 -8.54053 -7.97582 -6.45930 -4.56887 0.11128 1.04484 1.23387 1.37287 3.05257 3.11308 3.19416 3.21060 3.28608 3.54494 3.58860 3.95066 3.98367 4.13506 4.41598 4.67247 4.75297 4.78382 4.81706 4.87701 4.94825 5.05194 5.28812 5.34759 5.47282 5.54129 5.67706 5.68507 5.77967 5.83405 5.88051 5.99301 6.06520 6.22598 6.25511 6.28437 6.31795 6.37782 6.40401 6.46669 6.54610 6.72147 6.92452 6.98627 7.56187 7.73087 7.95864 8.24481 8.46800 8.51013 9.14622 9.33680 10.60815 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.013593 B = 0.002909 C = 0.002499 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2059.434480 B = 9624.059988 C =11200.607634 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.107 4.107 2 C 0.232 3.768 3 N -0.519 5.519 4 C 0.371 3.629 5 C -0.048 4.048 6 C -0.069 4.069 7 C -0.134 4.134 8 C -0.101 4.101 9 C -0.133 4.133 10 C -0.068 4.068 11 N -0.519 5.519 12 C 0.191 3.809 13 C -0.233 4.233 14 C 0.580 3.420 15 O -0.548 6.548 16 N -0.625 5.625 17 C 0.115 3.885 18 C 0.242 3.758 19 O -0.572 6.572 20 C -0.539 4.539 21 H 0.073 0.927 22 C 0.073 3.927 23 N -0.896 5.896 24 Si 0.908 3.092 25 H -0.277 1.277 26 H -0.284 1.284 27 H -0.271 1.271 28 C 0.069 3.931 29 H 0.090 0.910 30 H 0.076 0.924 31 H 0.100 0.900 32 H 0.137 0.863 33 H 0.127 0.873 34 H 0.124 0.876 35 H 0.128 0.872 36 H 0.139 0.861 37 H 0.179 0.821 38 H 0.074 0.926 39 H 0.090 0.910 40 H 0.392 0.608 41 H 0.274 0.726 42 H 0.087 0.913 43 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.968 15.886 6.100 17.130 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.085 3.915 3 N -0.234 5.234 4 C 0.107 3.893 5 C -0.050 4.050 6 C -0.089 4.089 7 C -0.152 4.152 8 C -0.119 4.119 9 C -0.151 4.151 10 C -0.087 4.087 11 N -0.233 5.233 12 C 0.024 3.976 13 C -0.240 4.240 14 C 0.369 3.631 15 O -0.429 6.429 16 N -0.357 5.357 17 C -0.006 4.006 18 C 0.200 3.800 19 O -0.383 6.383 20 C -0.577 4.577 21 H 0.091 0.909 22 C -0.130 4.130 23 N -0.536 5.536 24 Si 0.735 3.265 25 H -0.202 1.202 26 H -0.209 1.209 27 H -0.195 1.195 28 C -0.053 4.053 29 H 0.109 0.891 30 H 0.095 0.905 31 H 0.119 0.881 32 H 0.155 0.845 33 H 0.145 0.855 34 H 0.142 0.858 35 H 0.145 0.855 36 H 0.157 0.843 37 H 0.196 0.804 38 H 0.093 0.907 39 H 0.108 0.892 40 H 0.247 0.753 41 H 0.084 0.916 42 H 0.105 0.895 43 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 1.330 16.917 6.619 18.214 hybrid contribution 0.932 -1.574 -0.455 1.885 sum 2.262 15.343 6.164 16.689 Atomic orbital electron populations 1.20979 0.86586 1.04705 1.04156 1.21864 0.97935 0.86205 0.85489 1.68228 1.08757 1.29811 1.16577 1.21439 0.86226 0.92132 0.89471 1.18102 0.92811 0.88979 1.05106 1.21358 1.00932 0.90928 0.95650 1.21115 0.94516 0.97740 1.01790 1.21347 0.94322 0.98370 0.97892 1.21133 1.00225 0.92091 1.01607 1.21400 0.93036 0.98951 0.95362 1.68350 1.40773 0.98235 1.15904 1.23711 0.91162 0.96234 0.86475 1.21723 0.96300 0.96381 1.09590 1.17290 0.85391 0.82351 0.78109 1.90706 1.18432 1.85345 1.48431 1.50162 1.23502 1.07233 1.54812 1.23519 1.01216 0.77626 0.98282 1.19812 0.87389 0.90561 0.82258 1.86068 1.40283 1.94359 1.17614 1.21467 1.19303 1.06354 1.10584 0.90929 1.25074 0.96491 0.96716 0.94730 1.69397 1.37044 1.34339 1.12818 0.86330 0.79433 0.82171 0.78602 1.20237 1.20910 1.19533 1.24541 0.86469 1.00387 0.93942 0.89149 0.90517 0.88130 0.84505 0.85533 0.85828 0.85453 0.84340 0.80429 0.90731 0.89185 0.75285 0.91597 0.89529 0.91072 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.52 9.24 36.01 0.33 -1.19 16 2 C 0.23 3.80 6.86 -81.85 -0.56 3.24 16 3 N -0.52 -8.21 9.36 -7.10 -0.07 -8.28 16 4 C 0.37 5.81 7.55 -156.79 -1.18 4.62 16 5 C -0.05 -0.64 5.88 -104.91 -0.62 -1.25 16 6 C -0.07 -0.78 9.56 -39.23 -0.38 -1.16 16 7 C -0.13 -1.21 10.03 -39.64 -0.40 -1.60 16 8 C -0.10 -0.84 10.04 -39.51 -0.40 -1.24 16 9 C -0.13 -1.23 10.03 -39.64 -0.40 -1.63 16 10 C -0.07 -0.79 9.56 -39.22 -0.38 -1.17 16 11 N -0.52 -8.36 9.42 -10.82 -0.10 -8.46 16 12 C 0.19 3.13 10.14 -16.81 -0.17 2.96 16 13 C -0.23 -4.07 5.84 -104.65 -0.61 -4.68 16 14 C 0.58 11.37 7.52 -12.40 -0.09 11.27 16 15 O -0.55 -11.58 14.89 5.30 0.08 -11.50 16 16 N -0.62 -12.44 3.58 -179.26 -0.64 -13.08 16 17 C 0.11 2.34 8.23 -2.96 -0.02 2.32 16 18 C 0.24 5.48 1.40 -90.84 -0.13 5.35 16 19 O -0.57 -14.13 13.49 -35.23 -0.48 -14.60 16 20 C -0.54 -12.84 8.61 -34.45 -0.30 -13.14 16 21 H 0.07 1.68 7.81 -52.49 -0.41 1.27 16 22 C 0.07 1.75 5.40 -17.82 -0.10 1.65 16 23 N -0.90 -21.92 11.20 55.43 0.62 -21.29 16 24 Si 0.91 18.83 29.54 -169.99 -5.02 13.81 16 25 H -0.28 -5.81 7.11 56.52 0.40 -5.41 16 26 H -0.28 -5.89 7.11 56.52 0.40 -5.49 16 27 H -0.27 -5.55 7.11 56.52 0.40 -5.15 16 28 C 0.07 1.39 5.77 -2.84 -0.02 1.37 16 29 H 0.09 1.19 8.14 -51.93 -0.42 0.76 16 30 H 0.08 0.93 8.14 -51.93 -0.42 0.50 16 31 H 0.10 1.61 5.91 -51.93 -0.31 1.30 16 32 H 0.14 1.51 7.50 -52.49 -0.39 1.12 16 33 H 0.13 0.83 8.06 -52.48 -0.42 0.41 16 34 H 0.12 0.71 8.06 -52.48 -0.42 0.29 16 35 H 0.13 0.88 8.06 -52.48 -0.42 0.46 16 36 H 0.14 1.61 7.50 -52.49 -0.39 1.22 16 37 H 0.18 2.71 5.78 -52.48 -0.30 2.41 16 38 H 0.07 1.55 8.14 -51.93 -0.42 1.12 16 39 H 0.09 1.65 8.09 -51.93 -0.42 1.23 16 40 H 0.39 9.84 6.61 45.56 0.30 10.14 16 41 H 0.27 6.42 8.31 -40.82 -0.34 6.08 16 42 H 0.09 1.61 7.73 -51.93 -0.40 1.21 16 43 H 0.07 1.47 7.93 -51.93 -0.41 1.06 16 LS Contribution 366.22 15.07 5.52 5.52 Total: -1.00 -27.73 366.22 -9.91 -37.63 By element: Atomic # 1 Polarization: 18.94 SS G_CDS: -4.41 Total: 14.53 kcal Atomic # 6 Polarization: 11.13 SS G_CDS: -5.41 Total: 5.73 kcal Atomic # 7 Polarization: -50.93 SS G_CDS: -0.19 Total: -51.12 kcal Atomic # 8 Polarization: -25.70 SS G_CDS: -0.40 Total: -26.10 kcal Atomic # 14 Polarization: 18.83 SS G_CDS: -5.02 Total: 13.81 kcal Total LS contribution 5.52 Total: 5.52 kcal Total: -27.73 -9.91 -37.63 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000186843495.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.757 kcal (2) G-P(sol) polarization free energy of solvation -27.728 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 40.029 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.906 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.633 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.124 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds