Wall clock time and date at job start Tue Mar 31 2020 23:18:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 N 1.31965 * 120.48827 * 2 1 4 4 C 1.32708 * 120.89002 * 180.27938 * 3 2 1 5 5 C 1.48183 * 119.04663 * 179.74795 * 4 3 2 6 6 C 1.39443 * 120.13566 * 359.70427 * 5 4 3 7 7 C 1.37984 * 119.86600 * 179.71750 * 6 5 4 8 8 C 1.38341 * 120.13237 * 0.56205 * 7 6 5 9 9 C 1.38335 * 120.26610 * 359.71758 * 8 7 6 10 10 C 1.37989 * 120.13367 * 0.02562 * 9 8 7 11 11 N 1.32732 * 121.89864 * 359.73328 * 4 3 2 12 12 C 1.31926 * 120.88975 * 359.97438 * 11 4 3 13 13 C 1.40070 * 120.49356 * 179.75244 * 2 1 3 14 14 C 1.47692 * 120.85775 * 0.02562 * 13 2 1 15 15 O 1.21570 * 119.99807 * 334.04507 * 14 13 2 16 16 N 1.34773 * 120.00326 * 154.04876 * 14 13 2 17 17 C 1.47585 * 134.49311 * 174.28069 * 16 14 13 18 18 C 1.53948 * 86.11679 * 155.35986 * 17 16 14 19 19 O 1.42902 * 113.74028 * 269.15821 * 18 17 16 20 20 C 1.50690 * 113.74526 * 137.95157 * 18 17 16 21 21 H 1.08000 * 119.99812 * 1.92669 * 20 18 17 22 22 C 1.37876 * 120.00315 * 182.20080 * 20 18 17 23 23 N 1.31511 * 119.99825 * 359.72461 * 22 20 18 24 24 Si 1.86798 * 120.00052 * 179.72640 * 22 20 18 25 25 H 1.48501 * 109.47198 * 89.99996 * 24 22 20 26 26 H 1.48500 * 109.46960 * 209.99820 * 24 22 20 27 27 H 1.48497 * 109.47259 * 329.99609 * 24 22 20 28 28 C 1.47809 * 134.45402 * 354.15104 * 16 14 13 29 29 H 1.08999 * 109.47175 * 273.71216 * 1 2 3 30 30 H 1.09000 * 109.47523 * 33.70888 * 1 2 3 31 31 H 1.08997 * 109.47146 * 153.71499 * 1 2 3 32 32 H 1.08001 * 120.06803 * 359.97438 * 6 5 4 33 33 H 1.08008 * 119.93518 * 180.27976 * 7 6 5 34 34 H 1.08007 * 119.86473 * 179.73938 * 8 7 6 35 35 H 1.08006 * 119.93833 * 180.02562 * 9 8 7 36 36 H 1.08000 * 120.06986 * 180.02562 * 10 9 8 37 37 H 1.08004 * 120.49482 * 180.02562 * 12 11 4 38 38 H 1.08994 * 113.76535 * 41.05883 * 17 16 14 39 39 H 1.09002 * 113.76848 * 269.65599 * 17 16 14 40 40 H 0.96703 * 113.99790 * 178.07602 * 19 18 17 41 41 H 0.97003 * 120.00300 * 180.02562 * 23 22 20 42 42 H 1.09002 * 113.77433 * 90.37774 * 28 16 14 43 43 H 1.08998 * 113.83822 * 318.91345 * 28 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1765 1.1372 0.0000 4 6 3.5036 1.1465 -0.0056 5 6 4.2139 2.4470 -0.0110 6 6 3.4911 3.6394 -0.0165 7 6 4.1583 4.8473 -0.0157 8 6 5.5413 4.8767 -0.0212 9 6 6.2639 3.6971 -0.0216 10 6 5.6080 2.4830 -0.0171 11 7 4.2129 0.0246 -0.0061 12 6 3.6179 -1.1529 -0.0005 13 6 2.2178 -1.2070 0.0052 14 6 1.5097 -2.5031 0.0102 15 8 0.3873 -2.5807 0.4709 16 7 2.1077 -3.5997 -0.4958 17 6 1.7586 -5.0323 -0.5585 18 6 2.6801 -5.0956 -1.7901 19 8 2.0049 -4.8565 -3.0266 20 6 3.5595 -6.3187 -1.8278 21 1 3.4811 -7.0643 -1.0504 22 6 4.4682 -6.4832 -2.8516 23 7 4.5637 -5.5753 -3.7982 24 14 5.5636 -7.9957 -2.8941 25 1 4.8863 -9.0762 -3.6550 26 1 6.8499 -7.6568 -3.5543 27 1 5.8256 -8.4563 -1.5069 28 6 3.3759 -3.8494 -1.2129 29 1 -0.3633 0.0665 1.0255 30 1 -0.3634 0.8549 -0.5703 31 1 -0.3633 -0.9214 -0.4551 32 1 2.4113 3.6177 -0.0172 33 1 3.5995 5.7716 -0.0154 34 1 6.0591 5.8246 -0.0248 35 1 7.3435 3.7262 -0.0255 36 1 6.1731 1.5627 -0.0170 37 1 4.2013 -2.0618 -0.0005 38 1 0.7090 -5.2191 -0.7850 39 1 2.1212 -5.6104 0.2915 40 1 2.5853 -4.8663 -3.8000 41 1 5.2027 -5.6911 -4.5187 42 1 4.2145 -4.0793 -0.5556 43 1 3.6150 -3.0937 -1.9611 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000186843495.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:18:01 Heat of formation + Delta-G solvation = 13.738585 kcal Electronic energy + Delta-G solvation = -28371.964418 eV Core-core repulsion = 24382.959302 eV Total energy + Delta-G solvation = -3989.005116 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 339.137 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -42.56306 -41.09157 -39.84933 -39.05575 -36.03978 -35.54059 -34.51750 -34.15592 -31.92549 -31.64153 -30.75875 -29.34590 -27.29875 -27.15105 -26.07830 -24.55406 -23.15228 -22.67920 -21.94513 -20.41432 -19.43181 -19.00376 -18.50403 -18.13785 -17.39713 -16.94201 -16.86968 -16.64620 -16.07001 -15.96300 -15.72331 -15.54352 -15.10476 -14.79209 -14.48445 -14.35979 -14.32427 -14.22104 -14.03572 -13.81126 -13.58761 -13.42053 -13.23867 -13.00707 -12.82445 -12.77038 -12.27640 -12.23150 -12.22373 -12.01426 -11.83407 -11.40742 -11.09372 -10.98472 -10.65047 -10.54846 -10.30181 -9.89866 -9.70337 -9.52939 -8.26821 -6.43723 -1.05625 -0.21450 0.42299 0.46921 1.47133 1.50961 1.59120 1.63687 1.75388 2.40664 2.44656 2.47562 2.75399 2.95618 2.96780 3.15563 3.25285 3.62179 3.74265 3.83368 4.02502 4.10702 4.11953 4.26491 4.29949 4.44117 4.53078 4.57564 4.58040 4.59076 4.68230 4.70911 4.78122 4.84032 4.91906 4.96958 5.13725 5.15702 5.20805 5.47121 5.51711 5.56579 5.68948 5.72565 5.91478 6.00247 6.62728 6.65932 6.72824 6.94764 7.29638 7.41694 8.79017 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.013593 B = 0.002909 C = 0.002499 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2059.434480 B = 9624.059988 C =11200.607634 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.101 4.101 2 C 0.230 3.770 3 N -0.522 5.522 4 C 0.369 3.631 5 C -0.081 4.081 6 C -0.077 4.077 7 C -0.131 4.131 8 C -0.089 4.089 9 C -0.132 4.132 10 C -0.080 4.080 11 N -0.528 5.528 12 C 0.195 3.805 13 C -0.257 4.257 14 C 0.582 3.418 15 O -0.568 6.568 16 N -0.627 5.627 17 C 0.118 3.882 18 C 0.220 3.780 19 O -0.586 6.586 20 C -0.553 4.553 21 H 0.076 0.924 22 C 0.033 3.967 23 N -0.916 5.916 24 Si 0.967 3.033 25 H -0.280 1.280 26 H -0.283 1.283 27 H -0.264 1.264 28 C 0.086 3.914 29 H 0.101 0.899 30 H 0.098 0.902 31 H 0.081 0.919 32 H 0.134 0.866 33 H 0.156 0.844 34 H 0.160 0.840 35 H 0.153 0.847 36 H 0.130 0.870 37 H 0.185 0.815 38 H 0.066 0.934 39 H 0.112 0.888 40 H 0.387 0.613 41 H 0.275 0.725 42 H 0.103 0.897 43 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.368 17.917 6.780 19.450 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.082 3.918 3 N -0.237 5.237 4 C 0.107 3.893 5 C -0.083 4.083 6 C -0.097 4.097 7 C -0.149 4.149 8 C -0.107 4.107 9 C -0.150 4.150 10 C -0.100 4.100 11 N -0.242 5.242 12 C 0.028 3.972 13 C -0.264 4.264 14 C 0.371 3.629 15 O -0.450 6.450 16 N -0.359 5.359 17 C -0.003 4.003 18 C 0.179 3.821 19 O -0.398 6.398 20 C -0.591 4.591 21 H 0.094 0.906 22 C -0.167 4.167 23 N -0.556 5.556 24 Si 0.792 3.208 25 H -0.206 1.206 26 H -0.209 1.209 27 H -0.189 1.189 28 C -0.037 4.037 29 H 0.120 0.880 30 H 0.117 0.883 31 H 0.099 0.901 32 H 0.152 0.848 33 H 0.173 0.827 34 H 0.177 0.823 35 H 0.171 0.829 36 H 0.148 0.852 37 H 0.202 0.798 38 H 0.084 0.916 39 H 0.130 0.870 40 H 0.241 0.759 41 H 0.084 0.916 42 H 0.121 0.879 43 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 2.728 18.958 7.312 20.502 hybrid contribution 0.531 -2.038 -0.672 2.211 sum 3.259 16.920 6.640 18.466 Atomic orbital electron populations 1.20956 0.85287 1.04563 1.04972 1.22210 0.98919 0.86060 0.84587 1.68335 1.08903 1.29181 1.17236 1.22077 0.86416 0.93069 0.87739 1.18263 0.93610 0.88422 1.08049 1.21469 1.00958 0.91299 0.95962 1.21481 0.95199 0.97809 1.00400 1.21810 0.94156 0.99485 0.95246 1.21469 1.01642 0.91417 1.00486 1.21477 0.92495 0.99926 0.96052 1.68432 1.40756 0.98291 1.16756 1.23817 0.90879 0.96775 0.85747 1.21584 0.96751 0.95704 1.12392 1.17535 0.85133 0.82764 0.77442 1.90685 1.19271 1.85706 1.49310 1.50118 1.23423 1.07254 1.55105 1.23529 1.00394 0.78365 0.98057 1.20120 0.88431 0.91510 0.82080 1.86056 1.40860 1.94556 1.18297 1.21703 1.19556 1.06910 1.10906 0.90584 1.25732 0.97596 0.98932 0.94485 1.69472 1.37467 1.35521 1.13161 0.85414 0.77688 0.79068 0.78619 1.20624 1.20891 1.18860 1.24327 0.86812 0.98748 0.93788 0.88035 0.88345 0.90085 0.84824 0.82660 0.82274 0.82921 0.85172 0.79780 0.91590 0.87042 0.75898 0.91562 0.87917 0.92052 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -2.85 9.24 71.24 0.66 -2.19 16 2 C 0.23 7.57 6.86 42.98 0.29 7.87 16 3 N -0.52 -16.52 9.36 -176.37 -1.65 -18.17 16 4 C 0.37 11.63 7.55 137.42 1.04 12.67 16 5 C -0.08 -2.12 5.88 -20.05 -0.12 -2.24 16 6 C -0.08 -1.65 9.56 22.50 0.22 -1.43 16 7 C -0.13 -1.95 10.03 22.23 0.22 -1.73 16 8 C -0.09 -1.14 10.04 22.32 0.22 -0.91 16 9 C -0.13 -2.08 10.03 22.23 0.22 -1.86 16 10 C -0.08 -1.78 9.56 22.50 0.22 -1.57 16 11 N -0.53 -17.26 9.42 -188.16 -1.77 -19.03 16 12 C 0.19 6.49 10.14 85.13 0.86 7.36 16 13 C -0.26 -9.15 5.84 -19.88 -0.12 -9.27 16 14 C 0.58 23.17 7.52 86.74 0.65 23.82 16 15 O -0.57 -24.37 14.89 -3.94 -0.06 -24.43 16 16 N -0.63 -25.23 3.58 -843.15 -3.02 -28.25 16 17 C 0.12 4.83 8.23 86.49 0.71 5.54 16 18 C 0.22 10.06 1.40 -10.88 -0.02 10.05 16 19 O -0.59 -29.70 13.49 -148.98 -2.01 -31.71 16 20 C -0.55 -26.25 8.61 25.60 0.22 -26.03 16 21 H 0.08 3.48 7.81 -2.91 -0.02 3.45 16 22 C 0.03 1.59 5.40 84.65 0.46 2.05 16 23 N -0.92 -45.06 11.20 21.45 0.24 -44.82 16 24 Si 0.97 38.27 29.54 68.60 2.03 40.30 16 25 H -0.28 -11.20 7.11 99.48 0.71 -10.49 16 26 H -0.28 -11.13 7.11 99.48 0.71 -10.42 16 27 H -0.26 -10.11 7.11 99.48 0.71 -9.41 16 28 C 0.09 3.46 5.77 86.44 0.50 3.96 16 29 H 0.10 2.63 8.14 -2.39 -0.02 2.61 16 30 H 0.10 2.30 8.14 -2.39 -0.02 2.28 16 31 H 0.08 2.64 5.91 -2.39 -0.01 2.63 16 32 H 0.13 2.85 7.50 -2.91 -0.02 2.82 16 33 H 0.16 1.39 8.06 -2.91 -0.02 1.37 16 34 H 0.16 0.95 8.06 -2.91 -0.02 0.93 16 35 H 0.15 1.58 8.06 -2.91 -0.02 1.55 16 36 H 0.13 3.03 7.50 -2.91 -0.02 3.01 16 37 H 0.19 5.69 5.78 -2.91 -0.02 5.68 16 38 H 0.07 2.78 8.14 -2.39 -0.02 2.76 16 39 H 0.11 4.03 8.09 -2.39 -0.02 4.01 16 40 H 0.39 20.00 6.61 -74.06 -0.49 19.51 16 41 H 0.27 12.91 8.31 -92.71 -0.77 12.14 16 42 H 0.10 3.79 7.73 -2.39 -0.02 3.77 16 43 H 0.06 2.59 7.93 -2.39 -0.02 2.57 16 Total: -1.00 -59.84 366.22 0.58 -59.26 By element: Atomic # 1 Polarization: 40.19 SS G_CDS: 0.58 Total: 40.77 kcal Atomic # 6 Polarization: 19.85 SS G_CDS: 6.25 Total: 26.09 kcal Atomic # 7 Polarization: -104.07 SS G_CDS: -6.20 Total: -110.28 kcal Atomic # 8 Polarization: -54.07 SS G_CDS: -2.07 Total: -56.14 kcal Atomic # 14 Polarization: 38.27 SS G_CDS: 2.03 Total: 40.30 kcal Total: -59.84 0.58 -59.26 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000186843495.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.002 kcal (2) G-P(sol) polarization free energy of solvation -59.844 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.159 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.580 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.264 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.739 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds