Wall clock time and date at job start Tue Mar 31 2020 22:06:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86795 * 119.99955 * 2 1 4 4 H 1.48506 * 109.47155 * 269.99931 * 3 2 1 5 5 H 1.48498 * 109.47387 * 29.99741 * 3 2 1 6 6 H 1.48502 * 109.47186 * 149.99873 * 3 2 1 7 7 C 1.37874 * 119.99764 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99895 * 180.02562 * 7 2 1 9 9 C 1.50702 * 120.00383 * 0.02562 * 7 2 1 10 10 N 1.46504 * 109.47294 * 179.97438 * 9 7 2 11 11 C 1.46503 * 119.99902 * 275.79116 * 10 9 7 12 12 C 1.50694 * 109.46912 * 269.99553 * 11 10 9 13 13 C 1.38671 * 120.42154 * 269.72185 * 12 11 10 14 14 C 1.38632 * 118.42201 * 179.78468 * 13 12 11 15 15 C 1.38233 * 119.15697 * 0.51323 * 14 13 12 16 16 N 1.31849 * 120.76290 * 359.72687 * 15 14 13 17 17 C 1.31878 * 121.73006 * 0.02562 * 16 15 14 18 18 C 1.34776 * 119.99830 * 95.78669 * 10 9 7 19 19 O 1.21552 * 119.99802 * 184.64002 * 18 10 9 20 20 C 1.47856 * 119.99830 * 4.91892 * 18 10 9 21 21 C 1.39707 * 120.07656 * 311.63280 * 20 18 10 22 22 C 1.38054 * 120.14226 * 179.74137 * 21 20 18 23 23 C 1.38095 * 120.29996 * 0.51424 * 22 21 20 24 24 C 1.39669 * 120.14522 * 359.76191 * 23 22 21 25 25 C 1.47859 * 120.07206 * 179.97438 * 24 23 22 26 26 N 1.34773 * 120.00282 * 0.02562 * 25 24 23 27 27 O 1.21558 * 119.99872 * 180.02562 * 25 24 23 28 28 C 1.39303 * 120.07176 * 131.90771 * 20 18 10 29 29 H 0.96999 * 119.99711 * 0.02562 * 1 2 3 30 30 H 1.08994 * 109.46851 * 60.00285 * 9 7 2 31 31 H 1.08995 * 109.47197 * 299.99949 * 9 7 2 32 32 H 1.08993 * 109.47169 * 30.00244 * 11 10 9 33 33 H 1.08998 * 109.46695 * 150.00052 * 11 10 9 34 34 H 1.07999 * 120.78729 * 0.02562 * 13 12 11 35 35 H 1.07992 * 120.42286 * 180.22462 * 14 13 12 36 36 H 1.07997 * 119.61502 * 179.74694 * 15 14 13 37 37 H 1.08002 * 119.62402 * 180.02562 * 17 16 15 38 38 H 1.08001 * 119.92378 * 359.97438 * 21 20 18 39 39 H 1.08008 * 119.84969 * 180.25865 * 22 21 20 40 40 H 1.08008 * 119.92727 * 179.74361 * 23 22 21 41 41 H 0.96994 * 119.99986 * 0.02562 * 26 25 24 42 42 H 0.97000 * 120.00387 * 180.02562 * 26 25 24 43 43 H 1.07996 * 120.14745 * 359.97438 * 28 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4466 2.6527 0.7000 6 1 3.5467 1.4402 0.7001 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2510 -2.4992 0.0005 10 7 2.2030 -3.6127 0.0005 11 6 2.7763 -4.0863 -1.2618 12 6 1.8985 -5.1673 -1.8378 13 6 2.1203 -6.4978 -1.5159 14 6 1.2849 -7.4578 -2.0659 15 6 0.2726 -7.0606 -2.9192 16 7 0.0942 -5.7863 -3.2069 17 6 0.8664 -4.8458 -2.6985 18 6 2.5515 -4.2014 1.1618 19 8 3.4037 -5.0681 1.1721 20 6 1.8927 -3.7972 2.4223 21 6 1.7686 -2.4436 2.7447 22 6 1.1490 -2.0645 3.9187 23 6 0.6575 -3.0193 4.7869 24 6 0.7800 -4.3763 4.4795 25 6 0.2536 -5.3973 5.4105 26 7 -0.3457 -5.0190 6.5569 27 8 0.3614 -6.5779 5.1419 28 6 1.3995 -4.7656 3.2938 29 1 -0.4850 0.8401 -0.0004 30 1 0.6248 -2.5571 -0.8897 31 1 0.6241 -2.5568 0.8902 32 1 2.8404 -3.2566 -1.9656 33 1 3.7738 -4.4865 -1.0802 34 1 2.9223 -6.7790 -0.8495 35 1 1.4262 -8.5031 -1.8342 36 1 -0.3799 -7.8026 -3.3550 37 1 0.6895 -3.8122 -2.9570 38 1 2.1549 -1.6919 2.0722 39 1 1.0519 -1.0165 4.1613 40 1 0.1775 -2.7162 5.7057 41 1 -0.4320 -4.0770 6.7710 42 1 -0.6907 -5.6888 7.1678 43 1 1.4964 -5.8135 3.0512 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000195359844.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:06:47 Heat of formation + Delta-G solvation = -8.769558 kcal Electronic energy + Delta-G solvation = -28954.149517 eV Core-core repulsion = 24964.168374 eV Total energy + Delta-G solvation = -3989.981143 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 339.137 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -40.30959 -39.87233 -39.06858 -37.41897 -35.39025 -33.88286 -33.21609 -32.22307 -31.52437 -30.76771 -30.50927 -27.67947 -26.24080 -23.93139 -23.55615 -23.26673 -22.73910 -21.60172 -20.70561 -19.05019 -17.87111 -17.00897 -16.84215 -16.59676 -16.33419 -15.85393 -15.69027 -15.57100 -15.16579 -14.69866 -14.65147 -14.43944 -14.08603 -13.79989 -13.53626 -13.39431 -13.01543 -12.86760 -12.73690 -12.43985 -12.21087 -11.96936 -11.75785 -11.40893 -11.21405 -11.06993 -11.00155 -10.78415 -10.34740 -10.02876 -9.96007 -9.77861 -9.61427 -9.34477 -9.23417 -8.79669 -8.75956 -8.71846 -8.49146 -7.92083 -6.34741 -4.44239 1.03907 1.30588 1.43948 1.53155 2.90842 3.11758 3.20736 3.22377 3.30319 3.48813 3.72268 4.13517 4.15569 4.24783 4.67970 4.85493 4.91570 4.96396 5.04379 5.14494 5.17822 5.21960 5.28463 5.35355 5.62878 5.64117 5.74519 5.88343 6.01168 6.09283 6.14167 6.18898 6.36020 6.37688 6.53932 6.60794 6.69950 6.72769 6.80131 6.94302 7.07076 7.14677 7.28527 7.35170 7.58670 7.86665 8.12620 8.19914 8.23473 8.60523 8.79637 9.23277 10.70531 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.006601 B = 0.005568 C = 0.003376 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 4240.955243 B = 5027.710334 C = 8292.776446 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.879 5.879 2 C 0.071 3.929 3 Si 0.893 3.107 4 H -0.277 1.277 5 H -0.284 1.284 6 H -0.271 1.271 7 C -0.548 4.548 8 H 0.066 0.934 9 C 0.229 3.771 10 N -0.583 5.583 11 C 0.161 3.839 12 C -0.147 4.147 13 C -0.057 4.057 14 C -0.180 4.180 15 C 0.090 3.910 16 N -0.489 5.489 17 C 0.116 3.884 18 C 0.562 3.438 19 O -0.562 6.562 20 C -0.131 4.131 21 C -0.037 4.037 22 C -0.136 4.136 23 C -0.072 4.072 24 C -0.166 4.166 25 C 0.569 3.431 26 N -0.854 5.854 27 O -0.544 6.544 28 C -0.014 4.014 29 H 0.268 0.732 30 H 0.036 0.964 31 H 0.048 0.952 32 H 0.095 0.905 33 H 0.086 0.914 34 H 0.137 0.863 35 H 0.130 0.870 36 H 0.150 0.850 37 H 0.158 0.842 38 H 0.175 0.825 39 H 0.132 0.868 40 H 0.122 0.878 41 H 0.400 0.600 42 H 0.402 0.598 43 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.186 -5.358 5.627 7.773 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.515 5.515 2 C -0.134 4.134 3 Si 0.720 3.280 4 H -0.203 1.203 5 H -0.209 1.209 6 H -0.195 1.195 7 C -0.586 4.586 8 H 0.084 0.916 9 C 0.109 3.891 10 N -0.312 5.312 11 C 0.037 3.963 12 C -0.150 4.150 13 C -0.084 4.084 14 C -0.200 4.200 15 C -0.067 4.067 16 N -0.198 5.198 17 C -0.041 4.041 18 C 0.350 3.650 19 O -0.443 6.443 20 C -0.134 4.134 21 C -0.055 4.055 22 C -0.154 4.154 23 C -0.091 4.091 24 C -0.169 4.169 25 C 0.356 3.644 26 N -0.418 5.418 27 O -0.422 6.422 28 C -0.034 4.034 29 H 0.078 0.922 30 H 0.055 0.945 31 H 0.065 0.935 32 H 0.113 0.887 33 H 0.105 0.895 34 H 0.155 0.845 35 H 0.148 0.852 36 H 0.167 0.833 37 H 0.175 0.825 38 H 0.192 0.808 39 H 0.150 0.850 40 H 0.140 0.860 41 H 0.230 0.770 42 H 0.233 0.767 43 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges -0.454 -6.126 4.708 7.740 hybrid contribution 0.623 1.039 0.991 1.565 sum 0.168 -5.087 5.699 7.641 Atomic orbital electron populations 1.69934 1.06003 1.27626 1.47942 1.24952 0.94817 0.99230 0.94383 0.86567 0.79930 0.82886 0.78630 1.20314 1.20947 1.19549 1.21441 0.93793 0.90264 1.53080 0.91606 1.19699 0.87712 0.82294 0.99370 1.48149 1.44900 1.34010 1.04130 1.20152 0.95308 0.94736 0.86097 1.21413 0.99115 0.95763 0.98703 1.21669 0.98174 0.92357 0.96176 1.22112 0.97521 1.00603 0.99778 1.22701 0.95832 0.93044 0.95101 1.67699 1.26891 1.01456 1.23734 1.22809 0.89900 0.99024 0.92409 1.18246 0.81950 0.81068 0.83751 1.90683 1.33167 1.33384 1.87047 1.19871 1.03197 0.94257 0.96053 1.22737 0.91250 0.96181 0.95346 1.21097 0.99989 0.99697 0.94659 1.21347 0.97084 0.91841 0.98793 1.19567 1.06902 0.93151 0.97284 1.18301 0.76709 0.88247 0.81116 1.43732 1.62888 1.12149 1.23072 1.90804 1.57678 1.18333 1.75372 1.21143 0.91753 0.99777 0.90727 0.92224 0.94548 0.93467 0.88671 0.89548 0.84497 0.85197 0.83268 0.82463 0.80770 0.85028 0.86015 0.76997 0.76742 0.84729 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -21.99 13.29 55.43 0.74 -21.25 16 2 C 0.07 1.68 5.46 -17.82 -0.10 1.59 16 3 Si 0.89 18.57 29.54 -169.99 -5.02 13.55 16 4 H -0.28 -5.86 7.11 56.52 0.40 -5.45 16 5 H -0.28 -5.92 7.11 56.52 0.40 -5.52 16 6 H -0.27 -5.58 7.11 56.52 0.40 -5.18 16 7 C -0.55 -12.55 6.84 -34.44 -0.24 -12.79 16 8 H 0.07 1.53 7.81 -52.49 -0.41 1.12 16 9 C 0.23 4.99 4.66 -5.19 -0.02 4.96 16 10 N -0.58 -11.53 2.44 -177.55 -0.43 -11.96 16 11 C 0.16 2.78 5.61 -5.19 -0.03 2.75 16 12 C -0.15 -2.42 5.48 -104.48 -0.57 -3.00 16 13 C -0.06 -0.89 9.86 -39.28 -0.39 -1.28 16 14 C -0.18 -2.45 10.11 -39.44 -0.40 -2.85 16 15 C 0.09 1.27 11.18 -17.55 -0.20 1.08 16 16 N -0.49 -8.11 10.36 -13.25 -0.14 -8.25 16 17 C 0.12 1.93 10.86 -17.55 -0.19 1.74 16 18 C 0.56 11.50 7.24 -12.32 -0.09 11.41 16 19 O -0.56 -12.25 16.45 5.32 0.09 -12.17 16 20 C -0.13 -2.50 4.94 -105.02 -0.52 -3.02 16 21 C -0.04 -0.68 7.52 -39.10 -0.29 -0.97 16 22 C -0.14 -2.06 10.02 -39.70 -0.40 -2.45 16 23 C -0.07 -0.94 9.54 -39.10 -0.37 -1.31 16 24 C -0.17 -2.56 5.87 -105.02 -0.62 -3.18 16 25 C 0.57 8.35 8.05 -12.32 -0.10 8.25 16 26 N -0.85 -8.03 8.82 30.53 0.27 -7.76 16 27 O -0.54 -10.08 17.18 5.32 0.09 -9.99 16 28 C -0.01 -0.26 9.25 -38.78 -0.36 -0.62 16 29 H 0.27 6.44 8.31 -40.82 -0.34 6.10 16 30 H 0.04 0.85 8.11 -51.93 -0.42 0.42 16 31 H 0.05 1.09 5.41 -51.93 -0.28 0.81 16 32 H 0.10 1.57 8.02 -51.93 -0.42 1.15 16 33 H 0.09 1.47 7.31 -51.93 -0.38 1.09 16 34 H 0.14 2.13 7.94 -52.49 -0.42 1.71 16 35 H 0.13 1.40 8.06 -52.49 -0.42 0.97 16 36 H 0.15 1.62 8.06 -52.49 -0.42 1.20 16 37 H 0.16 2.54 8.06 -52.49 -0.42 2.12 16 38 H 0.18 3.51 4.74 -52.49 -0.25 3.27 16 39 H 0.13 1.72 8.06 -52.48 -0.42 1.30 16 40 H 0.12 1.07 6.39 -52.48 -0.34 0.73 16 41 H 0.40 2.62 6.85 -40.82 -0.28 2.34 16 42 H 0.40 3.09 8.93 -40.82 -0.36 2.72 16 43 H 0.13 2.55 7.64 -52.49 -0.40 2.15 16 LS Contribution 371.60 15.07 5.60 5.60 Total: -1.00 -30.40 371.60 -8.47 -38.86 By element: Atomic # 1 Polarization: 17.84 SS G_CDS: -4.78 Total: 13.06 kcal Atomic # 6 Polarization: 5.19 SS G_CDS: -4.88 Total: 0.32 kcal Atomic # 7 Polarization: -49.66 SS G_CDS: 0.43 Total: -49.23 kcal Atomic # 8 Polarization: -22.34 SS G_CDS: 0.18 Total: -22.16 kcal Atomic # 14 Polarization: 18.57 SS G_CDS: -5.02 Total: 13.55 kcal Total LS contribution 5.60 Total: 5.60 kcal Total: -30.40 -8.47 -38.86 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000195359844.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.095 kcal (2) G-P(sol) polarization free energy of solvation -30.398 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.302 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.467 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.865 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.770 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds