Wall clock time and date at job start Tue Mar 31 2020 22:06:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86795 * 119.99955 * 2 1 4 4 H 1.48506 * 109.47155 * 269.99931 * 3 2 1 5 5 H 1.48498 * 109.47387 * 29.99741 * 3 2 1 6 6 H 1.48502 * 109.47186 * 149.99873 * 3 2 1 7 7 C 1.37874 * 119.99764 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99895 * 180.02562 * 7 2 1 9 9 C 1.50702 * 120.00383 * 0.02562 * 7 2 1 10 10 N 1.46504 * 109.47294 * 179.97438 * 9 7 2 11 11 C 1.46503 * 119.99902 * 275.79116 * 10 9 7 12 12 C 1.50694 * 109.46912 * 269.99553 * 11 10 9 13 13 C 1.38671 * 120.42154 * 269.72185 * 12 11 10 14 14 C 1.38632 * 118.42201 * 179.78468 * 13 12 11 15 15 C 1.38233 * 119.15697 * 0.51323 * 14 13 12 16 16 N 1.31849 * 120.76290 * 359.72687 * 15 14 13 17 17 C 1.31878 * 121.73006 * 0.02562 * 16 15 14 18 18 C 1.34776 * 119.99830 * 95.78669 * 10 9 7 19 19 O 1.21552 * 119.99802 * 184.64002 * 18 10 9 20 20 C 1.47856 * 119.99830 * 4.91892 * 18 10 9 21 21 C 1.39707 * 120.07656 * 311.63280 * 20 18 10 22 22 C 1.38054 * 120.14226 * 179.74137 * 21 20 18 23 23 C 1.38095 * 120.29996 * 0.51424 * 22 21 20 24 24 C 1.39669 * 120.14522 * 359.76191 * 23 22 21 25 25 C 1.47859 * 120.07206 * 179.97438 * 24 23 22 26 26 N 1.34773 * 120.00282 * 0.02562 * 25 24 23 27 27 O 1.21558 * 119.99872 * 180.02562 * 25 24 23 28 28 C 1.39303 * 120.07176 * 131.90771 * 20 18 10 29 29 H 0.96999 * 119.99711 * 0.02562 * 1 2 3 30 30 H 1.08994 * 109.46851 * 60.00285 * 9 7 2 31 31 H 1.08995 * 109.47197 * 299.99949 * 9 7 2 32 32 H 1.08993 * 109.47169 * 30.00244 * 11 10 9 33 33 H 1.08998 * 109.46695 * 150.00052 * 11 10 9 34 34 H 1.07999 * 120.78729 * 0.02562 * 13 12 11 35 35 H 1.07992 * 120.42286 * 180.22462 * 14 13 12 36 36 H 1.07997 * 119.61502 * 179.74694 * 15 14 13 37 37 H 1.08002 * 119.62402 * 180.02562 * 17 16 15 38 38 H 1.08001 * 119.92378 * 359.97438 * 21 20 18 39 39 H 1.08008 * 119.84969 * 180.25865 * 22 21 20 40 40 H 1.08008 * 119.92727 * 179.74361 * 23 22 21 41 41 H 0.96994 * 119.99986 * 0.02562 * 26 25 24 42 42 H 0.97000 * 120.00387 * 180.02562 * 26 25 24 43 43 H 1.07996 * 120.14745 * 359.97438 * 28 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4466 2.6527 0.7000 6 1 3.5467 1.4402 0.7001 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2510 -2.4992 0.0005 10 7 2.2030 -3.6127 0.0005 11 6 2.7763 -4.0863 -1.2618 12 6 1.8985 -5.1673 -1.8378 13 6 2.1203 -6.4978 -1.5159 14 6 1.2849 -7.4578 -2.0659 15 6 0.2726 -7.0606 -2.9192 16 7 0.0942 -5.7863 -3.2069 17 6 0.8664 -4.8458 -2.6985 18 6 2.5515 -4.2014 1.1618 19 8 3.4037 -5.0681 1.1721 20 6 1.8927 -3.7972 2.4223 21 6 1.7686 -2.4436 2.7447 22 6 1.1490 -2.0645 3.9187 23 6 0.6575 -3.0193 4.7869 24 6 0.7800 -4.3763 4.4795 25 6 0.2536 -5.3973 5.4105 26 7 -0.3457 -5.0190 6.5569 27 8 0.3614 -6.5779 5.1419 28 6 1.3995 -4.7656 3.2938 29 1 -0.4850 0.8401 -0.0004 30 1 0.6248 -2.5571 -0.8897 31 1 0.6241 -2.5568 0.8902 32 1 2.8404 -3.2566 -1.9656 33 1 3.7738 -4.4865 -1.0802 34 1 2.9223 -6.7790 -0.8495 35 1 1.4262 -8.5031 -1.8342 36 1 -0.3799 -7.8026 -3.3550 37 1 0.6895 -3.8122 -2.9570 38 1 2.1549 -1.6919 2.0722 39 1 1.0519 -1.0165 4.1613 40 1 0.1775 -2.7162 5.7057 41 1 -0.4320 -4.0770 6.7710 42 1 -0.6907 -5.6888 7.1678 43 1 1.4964 -5.8135 3.0512 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000195359844.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:06:47 Heat of formation + Delta-G solvation = -28.599478 kcal Electronic energy + Delta-G solvation = -28955.009407 eV Core-core repulsion = 24964.168374 eV Total energy + Delta-G solvation = -3990.841032 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 339.137 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -41.69100 -41.08794 -40.42309 -38.74845 -37.02131 -35.02250 -34.78883 -33.67344 -32.77317 -32.05877 -31.77767 -29.39823 -27.66395 -25.23957 -25.10271 -24.53091 -24.18632 -22.88549 -21.93335 -20.40893 -19.09320 -18.65077 -18.06373 -17.93977 -17.72440 -17.21061 -17.03275 -16.92147 -16.56362 -16.29957 -15.89707 -15.74368 -15.41497 -15.09404 -14.80364 -14.68056 -14.40139 -14.31473 -14.15238 -13.96667 -13.69298 -13.38233 -13.20357 -12.86525 -12.68623 -12.63358 -12.46916 -12.32714 -12.03046 -11.71457 -11.28385 -11.02647 -10.76517 -10.74407 -10.58494 -10.49354 -10.02187 -10.00397 -9.86257 -9.55265 -8.17668 -6.32139 -0.21881 0.08643 0.10920 0.29427 1.45571 1.50156 1.56389 1.59764 1.90567 2.19624 2.44331 2.52593 2.86157 2.92000 3.11702 3.51050 3.56076 3.80756 3.85002 3.88842 3.92068 4.05257 4.06594 4.11072 4.28175 4.43049 4.50048 4.64004 4.71309 4.77508 4.84385 4.86143 4.90222 5.14276 5.15943 5.23758 5.33400 5.43475 5.44800 5.64145 5.74334 5.76633 5.81514 5.88806 6.05000 6.38853 6.46361 6.79073 6.97892 7.15941 7.26489 7.38751 8.87622 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.006601 B = 0.005568 C = 0.003376 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 4240.955243 B = 5027.710334 C = 8292.776446 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.908 5.908 2 C 0.037 3.963 3 Si 0.949 3.051 4 H -0.281 1.281 5 H -0.280 1.280 6 H -0.267 1.267 7 C -0.544 4.544 8 H 0.059 0.941 9 C 0.247 3.753 10 N -0.583 5.583 11 C 0.161 3.839 12 C -0.157 4.157 13 C -0.068 4.068 14 C -0.170 4.170 15 C 0.091 3.909 16 N -0.509 5.509 17 C 0.103 3.897 18 C 0.555 3.445 19 O -0.584 6.584 20 C -0.153 4.153 21 C -0.055 4.055 22 C -0.134 4.134 23 C -0.046 4.046 24 C -0.166 4.166 25 C 0.568 3.432 26 N -0.823 5.823 27 O -0.590 6.590 28 C -0.031 4.031 29 H 0.269 0.731 30 H 0.017 0.983 31 H 0.035 0.965 32 H 0.097 0.903 33 H 0.086 0.914 34 H 0.133 0.867 35 H 0.165 0.835 36 H 0.187 0.813 37 H 0.152 0.848 38 H 0.153 0.847 39 H 0.158 0.842 40 H 0.178 0.822 41 H 0.419 0.581 42 H 0.415 0.585 43 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.108 -5.051 7.566 9.164 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.546 5.546 2 C -0.166 4.166 3 Si 0.775 3.225 4 H -0.207 1.207 5 H -0.205 1.205 6 H -0.192 1.192 7 C -0.582 4.582 8 H 0.077 0.923 9 C 0.127 3.873 10 N -0.311 5.311 11 C 0.038 3.962 12 C -0.160 4.160 13 C -0.095 4.095 14 C -0.189 4.189 15 C -0.066 4.066 16 N -0.218 5.218 17 C -0.053 4.053 18 C 0.345 3.655 19 O -0.466 6.466 20 C -0.156 4.156 21 C -0.073 4.073 22 C -0.152 4.152 23 C -0.064 4.064 24 C -0.170 4.170 25 C 0.355 3.645 26 N -0.388 5.388 27 O -0.472 6.472 28 C -0.051 4.051 29 H 0.078 0.922 30 H 0.035 0.965 31 H 0.053 0.947 32 H 0.115 0.885 33 H 0.104 0.896 34 H 0.151 0.849 35 H 0.182 0.818 36 H 0.204 0.796 37 H 0.169 0.831 38 H 0.170 0.830 39 H 0.176 0.824 40 H 0.195 0.805 41 H 0.252 0.748 42 H 0.248 0.752 43 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges -1.385 -5.784 6.677 8.942 hybrid contribution 0.871 0.870 0.448 1.310 sum -0.514 -4.914 7.125 8.670 Atomic orbital electron populations 1.70024 1.07176 1.28278 1.49121 1.25514 0.95317 1.01705 0.94048 0.85684 0.78929 0.79614 0.78261 1.20660 1.20512 1.19188 1.21490 0.93391 0.90837 1.52498 0.92288 1.19339 0.87586 0.82677 0.97729 1.48140 1.44461 1.33551 1.04971 1.20212 0.95467 0.95276 0.85268 1.21275 0.99363 0.95992 0.99366 1.21773 0.98750 0.92463 0.96498 1.22468 0.96222 1.01862 0.98394 1.23342 0.96059 0.92739 0.94499 1.67715 1.27173 1.02564 1.24362 1.22745 0.90373 0.99167 0.93053 1.18597 0.81756 0.80717 0.84443 1.90645 1.34170 1.34348 1.87468 1.19806 1.04775 0.95081 0.95892 1.22557 0.92905 0.95034 0.96791 1.21419 0.98732 1.01520 0.93507 1.21817 0.94835 0.89968 0.99824 1.19770 1.06048 0.94717 0.96419 1.18219 0.76947 0.87221 0.82118 1.43450 1.60466 1.13721 1.21126 1.90792 1.59764 1.20025 1.76612 1.21068 0.93272 0.98620 0.92184 0.92172 0.96467 0.94683 0.88452 0.89582 0.84945 0.81750 0.79613 0.83064 0.83013 0.82433 0.80458 0.74830 0.75205 0.86736 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -45.90 13.29 21.45 0.28 -45.61 16 2 C 0.04 1.73 5.46 84.65 0.46 2.20 16 3 Si 0.95 38.04 29.54 68.60 2.03 40.07 16 4 H -0.28 -11.35 7.11 99.48 0.71 -10.65 16 5 H -0.28 -10.98 7.11 99.48 0.71 -10.27 16 6 H -0.27 -10.48 7.11 99.48 0.71 -9.77 16 7 C -0.54 -25.62 6.84 25.60 0.18 -25.45 16 8 H 0.06 2.82 7.81 -2.91 -0.02 2.80 16 9 C 0.25 11.27 4.66 85.63 0.40 11.67 16 10 N -0.58 -24.33 2.44 -833.93 -2.04 -26.37 16 11 C 0.16 5.89 5.61 85.63 0.48 6.37 16 12 C -0.16 -5.40 5.48 -19.77 -0.11 -5.51 16 13 C -0.07 -2.15 9.86 22.47 0.22 -1.93 16 14 C -0.17 -4.40 10.11 22.36 0.23 -4.17 16 15 C 0.09 2.41 11.18 84.69 0.95 3.36 16 16 N -0.51 -16.84 10.36 -195.84 -2.03 -18.87 16 17 C 0.10 3.58 10.86 84.67 0.92 4.50 16 18 C 0.56 23.98 7.24 86.79 0.63 24.61 16 19 O -0.58 -26.81 16.45 -3.88 -0.06 -26.87 16 20 C -0.15 -6.06 4.94 -20.12 -0.10 -6.16 16 21 C -0.05 -2.01 7.52 22.58 0.17 -1.84 16 22 C -0.13 -3.74 10.02 22.19 0.22 -3.52 16 23 C -0.05 -1.05 9.54 22.58 0.22 -0.83 16 24 C -0.17 -4.89 5.87 -20.12 -0.12 -5.01 16 25 C 0.57 15.60 8.05 86.79 0.70 16.30 16 26 N -0.82 -12.36 8.82 -175.59 -1.55 -13.91 16 27 O -0.59 -21.71 17.18 -3.90 -0.07 -21.77 16 28 C -0.03 -1.17 9.25 22.79 0.21 -0.96 16 29 H 0.27 12.95 8.31 -92.71 -0.77 12.18 16 30 H 0.02 0.85 8.11 -2.39 -0.02 0.83 16 31 H 0.04 1.70 5.41 -2.39 -0.01 1.69 16 32 H 0.10 3.43 8.02 -2.39 -0.02 3.41 16 33 H 0.09 3.11 7.31 -2.39 -0.02 3.10 16 34 H 0.13 4.26 7.94 -2.91 -0.02 4.24 16 35 H 0.16 3.07 8.06 -2.91 -0.02 3.05 16 36 H 0.19 3.47 8.06 -2.91 -0.02 3.44 16 37 H 0.15 5.24 8.06 -2.91 -0.02 5.22 16 38 H 0.15 6.29 4.74 -2.91 -0.01 6.28 16 39 H 0.16 3.58 8.06 -2.91 -0.02 3.55 16 40 H 0.18 2.00 6.39 -2.91 -0.02 1.98 16 41 H 0.42 3.27 6.85 -92.71 -0.64 2.63 16 42 H 0.42 4.86 8.93 -92.71 -0.83 4.04 16 43 H 0.11 4.63 7.64 -2.91 -0.02 4.61 16 Total: -1.00 -69.19 371.60 1.84 -67.35 By element: Atomic # 1 Polarization: 32.72 SS G_CDS: -0.38 Total: 32.34 kcal Atomic # 6 Polarization: 7.99 SS G_CDS: 5.65 Total: 13.64 kcal Atomic # 7 Polarization: -99.43 SS G_CDS: -5.33 Total: -104.75 kcal Atomic # 8 Polarization: -48.51 SS G_CDS: -0.13 Total: -48.64 kcal Atomic # 14 Polarization: 38.04 SS G_CDS: 2.03 Total: 40.07 kcal Total: -69.19 1.84 -67.35 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000195359844.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.753 kcal (2) G-P(sol) polarization free energy of solvation -69.193 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.440 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.840 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.353 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.599 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds