Wall clock time and date at job start Tue Mar 31 2020 22:17:38
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.31507 * 1
3 3 Si 1.86796 * 120.00076 * 2 1
4 4 H 1.48506 * 109.47183 * 269.99329 * 3 2 1
5 5 H 1.48502 * 109.47355 * 29.99487 * 3 2 1
6 6 H 1.48497 * 109.47573 * 149.99576 * 3 2 1
7 7 C 1.37876 * 120.00080 * 179.97438 * 2 1 3
8 8 H 1.07996 * 120.00030 * 0.02562 * 7 2 1
9 9 C 1.50699 * 120.00255 * 180.02562 * 7 2 1
10 10 N 1.46497 * 109.47496 * 179.97438 * 9 7 2
11 11 C 1.46497 * 120.00311 * 263.68502 * 10 9 7
12 12 C 1.50708 * 109.46946 * 269.99649 * 11 10 9
13 13 C 1.38668 * 120.41824 * 269.71924 * 12 11 10
14 14 C 1.38633 * 118.42054 * 179.78045 * 13 12 11
15 15 C 1.38223 * 119.15668 * 0.51931 * 14 13 12
16 16 N 1.31856 * 120.76754 * 359.72338 * 15 14 13
17 17 C 1.31886 * 121.72158 * 359.97438 * 16 15 14
18 18 C 1.34778 * 119.99580 * 83.68251 * 10 9 7
19 19 O 1.21364 * 119.99844 * 174.64311 * 18 10 9
20 20 C 1.49353 * 119.99978 * 354.63576 * 18 10 9
21 21 O 1.21365 * 120.00341 * 0.30637 * 20 18 10
22 22 N 1.34778 * 119.99578 * 180.30513 * 20 18 10
23 23 C 1.39730 * 119.99755 * 184.82797 * 22 20 18
24 24 C 1.38931 * 120.07613 * 144.61451 * 23 22 20
25 25 C 1.38097 * 119.92241 * 179.97438 * 24 23 22
26 26 C 1.38290 * 120.07561 * 0.02562 * 25 24 23
27 27 C 1.38290 * 120.15318 * 359.97438 * 26 25 24
28 28 C 1.38095 * 120.07708 * 0.02562 * 27 26 25
29 29 H 0.97002 * 120.00396 * 0.02562 * 1 2 3
30 30 H 1.09005 * 109.47321 * 60.00061 * 9 7 2
31 31 H 1.09002 * 109.47022 * 300.00340 * 9 7 2
32 32 H 1.08994 * 109.47369 * 29.99318 * 11 10 9
33 33 H 1.08997 * 109.47244 * 149.99647 * 11 10 9
34 34 H 1.08003 * 120.79108 * 0.02562 * 13 12 11
35 35 H 1.07995 * 120.41957 * 180.22156 * 14 13 12
36 36 H 1.07999 * 119.61607 * 179.74778 * 15 14 13
37 37 H 1.08003 * 119.61346 * 179.97438 * 17 16 15
38 38 H 0.96996 * 120.00714 * 4.82077 * 22 20 18
39 39 H 1.08005 * 120.03558 * 359.70049 * 24 23 22
40 40 H 1.08001 * 119.95954 * 179.97438 * 25 24 23
41 41 H 1.08002 * 119.92483 * 179.97438 * 26 25 24
42 42 H 1.08004 * 119.96492 * 180.02562 * 27 26 25
43 43 H 1.08005 * 120.03983 * 179.97438 * 28 27 26
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3151 0.0000 0.0000
3 14 2.2491 1.6177 0.0000
4 1 2.4967 2.0463 -1.4001
5 1 1.4465 2.6527 0.6999
6 1 3.5466 1.4402 0.7001
7 6 2.0045 -1.1940 0.0005
8 1 1.4645 -2.1293 0.0005
9 6 3.5115 -1.1941 0.0011
10 7 3.9998 -2.5752 0.0022
11 6 4.3751 -3.2185 1.2638
12 6 5.8354 -2.9685 1.5402
13 6 6.7986 -3.8537 1.0804
14 6 8.1299 -3.5809 1.3543
15 6 8.4498 -2.4494 2.0809
16 7 7.5067 -1.6322 2.5067
17 6 6.2308 -1.8570 2.2596
18 6 4.1038 -3.2541 -1.1574
19 8 4.5988 -4.3622 -1.1696
20 6 3.6098 -2.6428 -2.4274
21 8 3.1197 -1.5326 -2.4161
22 7 3.7082 -3.3243 -3.5861
23 6 3.3397 -2.7150 -4.7884
24 6 4.0390 -2.9976 -5.9551
25 6 3.6718 -2.3940 -7.1417
26 6 2.6097 -1.5088 -7.1693
27 6 1.9115 -1.2252 -6.0098
28 6 2.2733 -1.8252 -4.8197
29 1 -0.4851 0.8400 -0.0004
30 1 3.8745 -0.6800 0.8912
31 1 3.8751 -0.6804 -0.8888
32 1 3.7758 -2.8050 2.0749
33 1 4.1976 -4.2915 1.1914
34 1 6.5186 -4.7327 0.5188
35 1 8.9069 -4.2466 1.0086
36 1 9.4843 -2.2319 2.3020
37 1 5.4864 -1.1651 2.6251
38 1 4.0348 -4.2376 -3.5855
39 1 4.8717 -3.6852 -5.9332
40 1 4.2153 -2.6130 -8.0489
41 1 2.3249 -1.0378 -8.0985
42 1 1.0822 -0.5337 -6.0349
43 1 1.7278 -1.6030 -3.9145
RHF calculation, no. of doubly occupied orbitals= 62
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000195359944.mol2 43
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 22:17:38
Heat of formation + Delta-G solvation = 21.354957 kcal
Electronic energy + Delta-G solvation = -29047.412570 eV
Core-core repulsion = 25058.737725 eV
Total energy + Delta-G solvation = -3988.674846 eV
No. of doubly occupied orbitals = 62
Molecular weight
(most abundant/longest-lived isotopes) = 339.137 amu
Computer time = 0.71 seconds
Orbital eigenvalues (eV)
-40.74787 -40.06718 -39.03206 -37.64305 -35.91162 -34.34187 -32.96726 -32.19621
-31.46789 -30.75887 -29.53874 -28.20688 -26.79755 -24.31343 -23.51459 -22.73072
-22.48255 -22.17723 -21.03591 -19.36750 -17.71749 -17.22151 -16.98925 -16.90537
-16.48321 -16.08605 -15.71900 -15.56750 -15.11966 -14.96126 -14.39955 -14.23251
-13.92426 -13.74228 -13.62018 -13.31997 -13.21902 -13.01729 -12.85990 -12.53249
-12.45158 -12.19195 -12.01649 -11.58744 -11.36411 -11.18484 -11.10030 -10.73653
-10.52334 -10.28025 -10.11096 -9.75736 -9.60904 -9.38190 -9.09974 -8.85218
-8.69361 -8.52849 -8.13640 -7.94396 -6.11359 -4.09282 1.11798 1.32469
1.37054 1.54639 2.02356 2.77614 3.29225 3.33929 3.38206 3.64722
3.78080 3.99919 4.09877 4.38713 4.51307 4.76751 4.90475 4.95701
5.01002 5.06790 5.09305 5.14833 5.22697 5.27671 5.43703 5.53321
5.68035 5.69699 5.77273 5.85957 5.93931 6.14803 6.19859 6.25586
6.40132 6.44081 6.49644 6.61145 6.70823 6.76870 6.83703 7.00106
7.21184 7.41752 7.50514 7.74648 8.03172 8.13115 8.39694 8.49740
8.88146 9.48886 11.01612
Molecular weight = 339.14amu
Principal moments of inertia in cm(-1)
A = 0.008958 B = 0.004515 C = 0.003358
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 3124.841345 B = 6199.558618 C = 8336.031481
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.895 5.895
2 C 0.083 3.917
3 Si 0.871 3.129
4 H -0.273 1.273
5 H -0.287 1.287
6 H -0.266 1.266
7 C -0.516 4.516
8 H 0.073 0.927
9 C 0.199 3.801
10 N -0.551 5.551
11 C 0.159 3.841
12 C -0.151 4.151
13 C -0.053 4.053
14 C -0.181 4.181
15 C 0.093 3.907
16 N -0.489 5.489
17 C 0.114 3.886
18 C 0.514 3.486
19 O -0.552 6.552
20 C 0.492 3.508
21 O -0.436 6.436
22 N -0.661 5.661
23 C 0.152 3.848
24 C -0.149 4.149
25 C -0.107 4.107
26 C -0.141 4.141
27 C -0.101 4.101
28 C -0.118 4.118
29 H 0.264 0.736
30 H 0.031 0.969
31 H 0.056 0.944
32 H 0.101 0.899
33 H 0.091 0.909
34 H 0.140 0.860
35 H 0.131 0.869
36 H 0.151 0.849
37 H 0.158 0.842
38 H 0.416 0.584
39 H 0.123 0.877
40 H 0.122 0.878
41 H 0.119 0.881
42 H 0.125 0.875
43 H 0.149 0.851
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 11.484 -7.198 -6.276 14.936
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.534 5.534
2 C -0.120 4.120
3 Si 0.698 3.302
4 H -0.198 1.198
5 H -0.212 1.212
6 H -0.191 1.191
7 C -0.554 4.554
8 H 0.091 0.909
9 C 0.080 3.920
10 N -0.280 5.280
11 C 0.035 3.965
12 C -0.154 4.154
13 C -0.079 4.079
14 C -0.200 4.200
15 C -0.064 4.064
16 N -0.198 5.198
17 C -0.043 4.043
18 C 0.297 3.703
19 O -0.433 6.433
20 C 0.273 3.727
21 O -0.304 6.304
22 N -0.309 5.309
23 C 0.058 3.942
24 C -0.169 4.169
25 C -0.126 4.126
26 C -0.160 4.160
27 C -0.119 4.119
28 C -0.138 4.138
29 H 0.074 0.926
30 H 0.048 0.952
31 H 0.074 0.926
32 H 0.119 0.881
33 H 0.109 0.891
34 H 0.158 0.842
35 H 0.149 0.851
36 H 0.169 0.831
37 H 0.175 0.825
38 H 0.253 0.747
39 H 0.141 0.859
40 H 0.140 0.860
41 H 0.137 0.863
42 H 0.143 0.857
43 H 0.166 0.834
Dipole moment (debyes) X Y Z Total
from point charges 11.452 -6.036 -5.660 14.129
hybrid contribution 0.240 -0.211 -0.565 0.649
sum 11.692 -6.247 -6.226 14.645
Atomic orbital electron populations
1.69876 1.06162 1.26954 1.50362 1.24692 0.94558 0.98623 0.94133
0.86943 0.80223 0.84140 0.78920 1.19818 1.21250 1.19128 1.21036
0.88207 0.94748 1.51423 0.90868 1.20353 0.96755 0.76382 0.98558
1.47922 1.59567 1.16246 1.04243 1.20341 0.89666 0.99632 0.86821
1.21352 0.97693 0.96672 0.99692 1.21689 0.92299 0.98803 0.95135
1.22129 0.97133 0.99526 1.01254 1.22738 0.98846 0.90745 0.94096
1.67718 1.01398 1.30186 1.20451 1.22812 0.92794 0.94675 0.94003
1.19772 0.80083 0.85344 0.85117 1.90639 1.45853 1.20123 1.86677
1.20274 0.81073 0.86576 0.84727 1.90928 1.36903 1.17931 1.84592
1.43168 1.65643 1.17652 1.04455 1.17774 0.94475 0.96884 0.85105
1.20889 1.00324 1.03505 0.92227 1.20855 0.97475 0.97125 0.97111
1.21110 0.97127 0.99509 0.98264 1.21112 0.99619 0.99120 0.92087
1.21565 0.95477 0.97056 0.99744 0.92583 0.95159 0.92603 0.88104
0.89079 0.84190 0.85066 0.83139 0.82527 0.74735 0.85904 0.86035
0.86306 0.85730 0.83384
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 13.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.90 -26.41 13.96 55.43 0.77 -25.64 16
2 C 0.08 2.29 5.47 -17.82 -0.10 2.19 16
3 Si 0.87 21.03 27.47 -169.99 -4.67 16.36 16
4 H -0.27 -6.71 7.11 56.52 0.40 -6.31 16
5 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16
6 H -0.27 -6.08 6.54 56.52 0.37 -5.71 16
7 C -0.52 -13.60 8.35 -34.44 -0.29 -13.89 16
8 H 0.07 2.14 8.06 -52.49 -0.42 1.71 16
9 C 0.20 4.46 3.83 -5.20 -0.02 4.44 16
10 N -0.55 -10.65 2.46 -176.98 -0.43 -11.08 16
11 C 0.16 2.54 5.49 -5.19 -0.03 2.51 16
12 C -0.15 -2.25 5.48 -104.48 -0.57 -2.82 16
13 C -0.05 -0.72 9.74 -39.28 -0.38 -1.10 16
14 C -0.18 -2.13 10.11 -39.44 -0.40 -2.53 16
15 C 0.09 1.16 11.18 -17.55 -0.20 0.96 16
16 N -0.49 -7.40 10.36 -13.25 -0.14 -7.53 16
17 C 0.11 1.74 10.86 -17.55 -0.19 1.55 16
18 C 0.51 9.84 7.67 -11.63 -0.09 9.75 16
19 O -0.55 -10.12 15.44 5.48 0.08 -10.03 16
20 C 0.49 9.53 7.57 -11.63 -0.09 9.44 16
21 O -0.44 -9.81 9.57 5.48 0.05 -9.76 16
22 N -0.66 -10.51 5.32 -10.30 -0.05 -10.56 16
23 C 0.15 2.37 6.29 -83.75 -0.53 1.84 16
24 C -0.15 -1.89 9.97 -39.38 -0.39 -2.28 16
25 C -0.11 -1.23 10.04 -39.61 -0.40 -1.63 16
26 C -0.14 -1.71 10.04 -39.54 -0.40 -2.11 16
27 C -0.10 -1.45 10.04 -39.61 -0.40 -1.85 16
28 C -0.12 -2.02 8.70 -39.38 -0.34 -2.36 16
29 H 0.26 7.37 8.31 -40.82 -0.34 7.03 16
30 H 0.03 0.66 7.08 -51.93 -0.37 0.29 16
31 H 0.06 1.33 5.27 -51.93 -0.27 1.06 16
32 H 0.10 1.54 8.02 -51.93 -0.42 1.12 16
33 H 0.09 1.38 7.45 -51.93 -0.39 1.00 16
34 H 0.14 1.86 7.49 -52.48 -0.39 1.46 16
35 H 0.13 1.16 8.06 -52.49 -0.42 0.74 16
36 H 0.15 1.41 8.06 -52.49 -0.42 0.98 16
37 H 0.16 2.27 8.06 -52.48 -0.42 1.85 16
38 H 0.42 5.60 8.30 -40.82 -0.34 5.26 16
39 H 0.12 1.27 8.06 -52.48 -0.42 0.84 16
40 H 0.12 1.05 8.06 -52.49 -0.42 0.62 16
41 H 0.12 1.13 8.06 -52.49 -0.42 0.71 16
42 H 0.12 1.61 8.06 -52.48 -0.42 1.19 16
43 H 0.15 3.00 6.24 -52.48 -0.33 2.67 16
LS Contribution 368.76 15.07 5.56 5.56
Total: -1.00 -31.84 368.76 -8.69 -40.53
By element:
Atomic # 1 Polarization: 15.10 SS G_CDS: -5.05 Total: 10.05 kcal
Atomic # 6 Polarization: 6.92 SS G_CDS: -4.81 Total: 2.11 kcal
Atomic # 7 Polarization: -54.96 SS G_CDS: 0.15 Total: -54.82 kcal
Atomic # 8 Polarization: -19.93 SS G_CDS: 0.14 Total: -19.79 kcal
Atomic # 14 Polarization: 21.03 SS G_CDS: -4.67 Total: 16.36 kcal
Total LS contribution 5.56 Total: 5.56 kcal
Total: -31.84 -8.69 -40.53 kcal
The number of atoms in the molecule is 43
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000195359944.mol2 43
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 61.886 kcal
(2) G-P(sol) polarization free energy of solvation -31.843 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.043 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.688 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.531 kcal
(6) G-S(sol) free energy of system = (1) + (5) 21.355 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.71 seconds