Wall clock time and date at job start Tue Mar 31 2020 22:17:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31507 * 1 3 3 Si 1.86796 * 120.00076 * 2 1 4 4 H 1.48506 * 109.47183 * 269.99329 * 3 2 1 5 5 H 1.48502 * 109.47355 * 29.99487 * 3 2 1 6 6 H 1.48497 * 109.47573 * 149.99576 * 3 2 1 7 7 C 1.37876 * 120.00080 * 179.97438 * 2 1 3 8 8 H 1.07996 * 120.00030 * 0.02562 * 7 2 1 9 9 C 1.50699 * 120.00255 * 180.02562 * 7 2 1 10 10 N 1.46497 * 109.47496 * 179.97438 * 9 7 2 11 11 C 1.46497 * 120.00311 * 263.68502 * 10 9 7 12 12 C 1.50708 * 109.46946 * 269.99649 * 11 10 9 13 13 C 1.38668 * 120.41824 * 269.71924 * 12 11 10 14 14 C 1.38633 * 118.42054 * 179.78045 * 13 12 11 15 15 C 1.38223 * 119.15668 * 0.51931 * 14 13 12 16 16 N 1.31856 * 120.76754 * 359.72338 * 15 14 13 17 17 C 1.31886 * 121.72158 * 359.97438 * 16 15 14 18 18 C 1.34778 * 119.99580 * 83.68251 * 10 9 7 19 19 O 1.21364 * 119.99844 * 174.64311 * 18 10 9 20 20 C 1.49353 * 119.99978 * 354.63576 * 18 10 9 21 21 O 1.21365 * 120.00341 * 0.30637 * 20 18 10 22 22 N 1.34778 * 119.99578 * 180.30513 * 20 18 10 23 23 C 1.39730 * 119.99755 * 184.82797 * 22 20 18 24 24 C 1.38931 * 120.07613 * 144.61451 * 23 22 20 25 25 C 1.38097 * 119.92241 * 179.97438 * 24 23 22 26 26 C 1.38290 * 120.07561 * 0.02562 * 25 24 23 27 27 C 1.38290 * 120.15318 * 359.97438 * 26 25 24 28 28 C 1.38095 * 120.07708 * 0.02562 * 27 26 25 29 29 H 0.97002 * 120.00396 * 0.02562 * 1 2 3 30 30 H 1.09005 * 109.47321 * 60.00061 * 9 7 2 31 31 H 1.09002 * 109.47022 * 300.00340 * 9 7 2 32 32 H 1.08994 * 109.47369 * 29.99318 * 11 10 9 33 33 H 1.08997 * 109.47244 * 149.99647 * 11 10 9 34 34 H 1.08003 * 120.79108 * 0.02562 * 13 12 11 35 35 H 1.07995 * 120.41957 * 180.22156 * 14 13 12 36 36 H 1.07999 * 119.61607 * 179.74778 * 15 14 13 37 37 H 1.08003 * 119.61346 * 179.97438 * 17 16 15 38 38 H 0.96996 * 120.00714 * 4.82077 * 22 20 18 39 39 H 1.08005 * 120.03558 * 359.70049 * 24 23 22 40 40 H 1.08001 * 119.95954 * 179.97438 * 25 24 23 41 41 H 1.08002 * 119.92483 * 179.97438 * 26 25 24 42 42 H 1.08004 * 119.96492 * 180.02562 * 27 26 25 43 43 H 1.08005 * 120.03983 * 179.97438 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4967 2.0463 -1.4001 5 1 1.4465 2.6527 0.6999 6 1 3.5466 1.4402 0.7001 7 6 2.0045 -1.1940 0.0005 8 1 1.4645 -2.1293 0.0005 9 6 3.5115 -1.1941 0.0011 10 7 3.9998 -2.5752 0.0022 11 6 4.3751 -3.2185 1.2638 12 6 5.8354 -2.9685 1.5402 13 6 6.7986 -3.8537 1.0804 14 6 8.1299 -3.5809 1.3543 15 6 8.4498 -2.4494 2.0809 16 7 7.5067 -1.6322 2.5067 17 6 6.2308 -1.8570 2.2596 18 6 4.1038 -3.2541 -1.1574 19 8 4.5988 -4.3622 -1.1696 20 6 3.6098 -2.6428 -2.4274 21 8 3.1197 -1.5326 -2.4161 22 7 3.7082 -3.3243 -3.5861 23 6 3.3397 -2.7150 -4.7884 24 6 4.0390 -2.9976 -5.9551 25 6 3.6718 -2.3940 -7.1417 26 6 2.6097 -1.5088 -7.1693 27 6 1.9115 -1.2252 -6.0098 28 6 2.2733 -1.8252 -4.8197 29 1 -0.4851 0.8400 -0.0004 30 1 3.8745 -0.6800 0.8912 31 1 3.8751 -0.6804 -0.8888 32 1 3.7758 -2.8050 2.0749 33 1 4.1976 -4.2915 1.1914 34 1 6.5186 -4.7327 0.5188 35 1 8.9069 -4.2466 1.0086 36 1 9.4843 -2.2319 2.3020 37 1 5.4864 -1.1651 2.6251 38 1 4.0348 -4.2376 -3.5855 39 1 4.8717 -3.6852 -5.9332 40 1 4.2153 -2.6130 -8.0489 41 1 2.3249 -1.0378 -8.0985 42 1 1.0822 -0.5337 -6.0349 43 1 1.7278 -1.6030 -3.9145 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000195359944.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:17:38 Heat of formation + Delta-G solvation = 21.354957 kcal Electronic energy + Delta-G solvation = -29047.412570 eV Core-core repulsion = 25058.737725 eV Total energy + Delta-G solvation = -3988.674846 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 339.137 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -40.74787 -40.06718 -39.03206 -37.64305 -35.91162 -34.34187 -32.96726 -32.19621 -31.46789 -30.75887 -29.53874 -28.20688 -26.79755 -24.31343 -23.51459 -22.73072 -22.48255 -22.17723 -21.03591 -19.36750 -17.71749 -17.22151 -16.98925 -16.90537 -16.48321 -16.08605 -15.71900 -15.56750 -15.11966 -14.96126 -14.39955 -14.23251 -13.92426 -13.74228 -13.62018 -13.31997 -13.21902 -13.01729 -12.85990 -12.53249 -12.45158 -12.19195 -12.01649 -11.58744 -11.36411 -11.18484 -11.10030 -10.73653 -10.52334 -10.28025 -10.11096 -9.75736 -9.60904 -9.38190 -9.09974 -8.85218 -8.69361 -8.52849 -8.13640 -7.94396 -6.11359 -4.09282 1.11798 1.32469 1.37054 1.54639 2.02356 2.77614 3.29225 3.33929 3.38206 3.64722 3.78080 3.99919 4.09877 4.38713 4.51307 4.76751 4.90475 4.95701 5.01002 5.06790 5.09305 5.14833 5.22697 5.27671 5.43703 5.53321 5.68035 5.69699 5.77273 5.85957 5.93931 6.14803 6.19859 6.25586 6.40132 6.44081 6.49644 6.61145 6.70823 6.76870 6.83703 7.00106 7.21184 7.41752 7.50514 7.74648 8.03172 8.13115 8.39694 8.49740 8.88146 9.48886 11.01612 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.008958 B = 0.004515 C = 0.003358 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3124.841345 B = 6199.558618 C = 8336.031481 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.895 5.895 2 C 0.083 3.917 3 Si 0.871 3.129 4 H -0.273 1.273 5 H -0.287 1.287 6 H -0.266 1.266 7 C -0.516 4.516 8 H 0.073 0.927 9 C 0.199 3.801 10 N -0.551 5.551 11 C 0.159 3.841 12 C -0.151 4.151 13 C -0.053 4.053 14 C -0.181 4.181 15 C 0.093 3.907 16 N -0.489 5.489 17 C 0.114 3.886 18 C 0.514 3.486 19 O -0.552 6.552 20 C 0.492 3.508 21 O -0.436 6.436 22 N -0.661 5.661 23 C 0.152 3.848 24 C -0.149 4.149 25 C -0.107 4.107 26 C -0.141 4.141 27 C -0.101 4.101 28 C -0.118 4.118 29 H 0.264 0.736 30 H 0.031 0.969 31 H 0.056 0.944 32 H 0.101 0.899 33 H 0.091 0.909 34 H 0.140 0.860 35 H 0.131 0.869 36 H 0.151 0.849 37 H 0.158 0.842 38 H 0.416 0.584 39 H 0.123 0.877 40 H 0.122 0.878 41 H 0.119 0.881 42 H 0.125 0.875 43 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.484 -7.198 -6.276 14.936 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.534 5.534 2 C -0.120 4.120 3 Si 0.698 3.302 4 H -0.198 1.198 5 H -0.212 1.212 6 H -0.191 1.191 7 C -0.554 4.554 8 H 0.091 0.909 9 C 0.080 3.920 10 N -0.280 5.280 11 C 0.035 3.965 12 C -0.154 4.154 13 C -0.079 4.079 14 C -0.200 4.200 15 C -0.064 4.064 16 N -0.198 5.198 17 C -0.043 4.043 18 C 0.297 3.703 19 O -0.433 6.433 20 C 0.273 3.727 21 O -0.304 6.304 22 N -0.309 5.309 23 C 0.058 3.942 24 C -0.169 4.169 25 C -0.126 4.126 26 C -0.160 4.160 27 C -0.119 4.119 28 C -0.138 4.138 29 H 0.074 0.926 30 H 0.048 0.952 31 H 0.074 0.926 32 H 0.119 0.881 33 H 0.109 0.891 34 H 0.158 0.842 35 H 0.149 0.851 36 H 0.169 0.831 37 H 0.175 0.825 38 H 0.253 0.747 39 H 0.141 0.859 40 H 0.140 0.860 41 H 0.137 0.863 42 H 0.143 0.857 43 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges 11.452 -6.036 -5.660 14.129 hybrid contribution 0.240 -0.211 -0.565 0.649 sum 11.692 -6.247 -6.226 14.645 Atomic orbital electron populations 1.69876 1.06162 1.26954 1.50362 1.24692 0.94558 0.98623 0.94133 0.86943 0.80223 0.84140 0.78920 1.19818 1.21250 1.19128 1.21036 0.88207 0.94748 1.51423 0.90868 1.20353 0.96755 0.76382 0.98558 1.47922 1.59567 1.16246 1.04243 1.20341 0.89666 0.99632 0.86821 1.21352 0.97693 0.96672 0.99692 1.21689 0.92299 0.98803 0.95135 1.22129 0.97133 0.99526 1.01254 1.22738 0.98846 0.90745 0.94096 1.67718 1.01398 1.30186 1.20451 1.22812 0.92794 0.94675 0.94003 1.19772 0.80083 0.85344 0.85117 1.90639 1.45853 1.20123 1.86677 1.20274 0.81073 0.86576 0.84727 1.90928 1.36903 1.17931 1.84592 1.43168 1.65643 1.17652 1.04455 1.17774 0.94475 0.96884 0.85105 1.20889 1.00324 1.03505 0.92227 1.20855 0.97475 0.97125 0.97111 1.21110 0.97127 0.99509 0.98264 1.21112 0.99619 0.99120 0.92087 1.21565 0.95477 0.97056 0.99744 0.92583 0.95159 0.92603 0.88104 0.89079 0.84190 0.85066 0.83139 0.82527 0.74735 0.85904 0.86035 0.86306 0.85730 0.83384 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.41 13.96 55.43 0.77 -25.64 16 2 C 0.08 2.29 5.47 -17.82 -0.10 2.19 16 3 Si 0.87 21.03 27.47 -169.99 -4.67 16.36 16 4 H -0.27 -6.71 7.11 56.52 0.40 -6.31 16 5 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 6 H -0.27 -6.08 6.54 56.52 0.37 -5.71 16 7 C -0.52 -13.60 8.35 -34.44 -0.29 -13.89 16 8 H 0.07 2.14 8.06 -52.49 -0.42 1.71 16 9 C 0.20 4.46 3.83 -5.20 -0.02 4.44 16 10 N -0.55 -10.65 2.46 -176.98 -0.43 -11.08 16 11 C 0.16 2.54 5.49 -5.19 -0.03 2.51 16 12 C -0.15 -2.25 5.48 -104.48 -0.57 -2.82 16 13 C -0.05 -0.72 9.74 -39.28 -0.38 -1.10 16 14 C -0.18 -2.13 10.11 -39.44 -0.40 -2.53 16 15 C 0.09 1.16 11.18 -17.55 -0.20 0.96 16 16 N -0.49 -7.40 10.36 -13.25 -0.14 -7.53 16 17 C 0.11 1.74 10.86 -17.55 -0.19 1.55 16 18 C 0.51 9.84 7.67 -11.63 -0.09 9.75 16 19 O -0.55 -10.12 15.44 5.48 0.08 -10.03 16 20 C 0.49 9.53 7.57 -11.63 -0.09 9.44 16 21 O -0.44 -9.81 9.57 5.48 0.05 -9.76 16 22 N -0.66 -10.51 5.32 -10.30 -0.05 -10.56 16 23 C 0.15 2.37 6.29 -83.75 -0.53 1.84 16 24 C -0.15 -1.89 9.97 -39.38 -0.39 -2.28 16 25 C -0.11 -1.23 10.04 -39.61 -0.40 -1.63 16 26 C -0.14 -1.71 10.04 -39.54 -0.40 -2.11 16 27 C -0.10 -1.45 10.04 -39.61 -0.40 -1.85 16 28 C -0.12 -2.02 8.70 -39.38 -0.34 -2.36 16 29 H 0.26 7.37 8.31 -40.82 -0.34 7.03 16 30 H 0.03 0.66 7.08 -51.93 -0.37 0.29 16 31 H 0.06 1.33 5.27 -51.93 -0.27 1.06 16 32 H 0.10 1.54 8.02 -51.93 -0.42 1.12 16 33 H 0.09 1.38 7.45 -51.93 -0.39 1.00 16 34 H 0.14 1.86 7.49 -52.48 -0.39 1.46 16 35 H 0.13 1.16 8.06 -52.49 -0.42 0.74 16 36 H 0.15 1.41 8.06 -52.49 -0.42 0.98 16 37 H 0.16 2.27 8.06 -52.48 -0.42 1.85 16 38 H 0.42 5.60 8.30 -40.82 -0.34 5.26 16 39 H 0.12 1.27 8.06 -52.48 -0.42 0.84 16 40 H 0.12 1.05 8.06 -52.49 -0.42 0.62 16 41 H 0.12 1.13 8.06 -52.49 -0.42 0.71 16 42 H 0.12 1.61 8.06 -52.48 -0.42 1.19 16 43 H 0.15 3.00 6.24 -52.48 -0.33 2.67 16 LS Contribution 368.76 15.07 5.56 5.56 Total: -1.00 -31.84 368.76 -8.69 -40.53 By element: Atomic # 1 Polarization: 15.10 SS G_CDS: -5.05 Total: 10.05 kcal Atomic # 6 Polarization: 6.92 SS G_CDS: -4.81 Total: 2.11 kcal Atomic # 7 Polarization: -54.96 SS G_CDS: 0.15 Total: -54.82 kcal Atomic # 8 Polarization: -19.93 SS G_CDS: 0.14 Total: -19.79 kcal Atomic # 14 Polarization: 21.03 SS G_CDS: -4.67 Total: 16.36 kcal Total LS contribution 5.56 Total: 5.56 kcal Total: -31.84 -8.69 -40.53 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000195359944.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.886 kcal (2) G-P(sol) polarization free energy of solvation -31.843 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.043 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.688 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.531 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.355 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds