Wall clock time and date at job start Tue Mar 31 2020 22:17:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31507 * 1 3 3 Si 1.86796 * 120.00076 * 2 1 4 4 H 1.48506 * 109.47183 * 269.99329 * 3 2 1 5 5 H 1.48502 * 109.47355 * 29.99487 * 3 2 1 6 6 H 1.48497 * 109.47573 * 149.99576 * 3 2 1 7 7 C 1.37876 * 120.00080 * 179.97438 * 2 1 3 8 8 H 1.07996 * 120.00030 * 0.02562 * 7 2 1 9 9 C 1.50699 * 120.00255 * 180.02562 * 7 2 1 10 10 N 1.46497 * 109.47496 * 179.97438 * 9 7 2 11 11 C 1.46497 * 120.00311 * 263.68502 * 10 9 7 12 12 C 1.50708 * 109.46946 * 269.99649 * 11 10 9 13 13 C 1.38668 * 120.41824 * 269.71924 * 12 11 10 14 14 C 1.38633 * 118.42054 * 179.78045 * 13 12 11 15 15 C 1.38223 * 119.15668 * 0.51931 * 14 13 12 16 16 N 1.31856 * 120.76754 * 359.72338 * 15 14 13 17 17 C 1.31886 * 121.72158 * 359.97438 * 16 15 14 18 18 C 1.34778 * 119.99580 * 83.68251 * 10 9 7 19 19 O 1.21364 * 119.99844 * 174.64311 * 18 10 9 20 20 C 1.49353 * 119.99978 * 354.63576 * 18 10 9 21 21 O 1.21365 * 120.00341 * 0.30637 * 20 18 10 22 22 N 1.34778 * 119.99578 * 180.30513 * 20 18 10 23 23 C 1.39730 * 119.99755 * 184.82797 * 22 20 18 24 24 C 1.38931 * 120.07613 * 144.61451 * 23 22 20 25 25 C 1.38097 * 119.92241 * 179.97438 * 24 23 22 26 26 C 1.38290 * 120.07561 * 0.02562 * 25 24 23 27 27 C 1.38290 * 120.15318 * 359.97438 * 26 25 24 28 28 C 1.38095 * 120.07708 * 0.02562 * 27 26 25 29 29 H 0.97002 * 120.00396 * 0.02562 * 1 2 3 30 30 H 1.09005 * 109.47321 * 60.00061 * 9 7 2 31 31 H 1.09002 * 109.47022 * 300.00340 * 9 7 2 32 32 H 1.08994 * 109.47369 * 29.99318 * 11 10 9 33 33 H 1.08997 * 109.47244 * 149.99647 * 11 10 9 34 34 H 1.08003 * 120.79108 * 0.02562 * 13 12 11 35 35 H 1.07995 * 120.41957 * 180.22156 * 14 13 12 36 36 H 1.07999 * 119.61607 * 179.74778 * 15 14 13 37 37 H 1.08003 * 119.61346 * 179.97438 * 17 16 15 38 38 H 0.96996 * 120.00714 * 4.82077 * 22 20 18 39 39 H 1.08005 * 120.03558 * 359.70049 * 24 23 22 40 40 H 1.08001 * 119.95954 * 179.97438 * 25 24 23 41 41 H 1.08002 * 119.92483 * 179.97438 * 26 25 24 42 42 H 1.08004 * 119.96492 * 180.02562 * 27 26 25 43 43 H 1.08005 * 120.03983 * 179.97438 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4967 2.0463 -1.4001 5 1 1.4465 2.6527 0.6999 6 1 3.5466 1.4402 0.7001 7 6 2.0045 -1.1940 0.0005 8 1 1.4645 -2.1293 0.0005 9 6 3.5115 -1.1941 0.0011 10 7 3.9998 -2.5752 0.0022 11 6 4.3751 -3.2185 1.2638 12 6 5.8354 -2.9685 1.5402 13 6 6.7986 -3.8537 1.0804 14 6 8.1299 -3.5809 1.3543 15 6 8.4498 -2.4494 2.0809 16 7 7.5067 -1.6322 2.5067 17 6 6.2308 -1.8570 2.2596 18 6 4.1038 -3.2541 -1.1574 19 8 4.5988 -4.3622 -1.1696 20 6 3.6098 -2.6428 -2.4274 21 8 3.1197 -1.5326 -2.4161 22 7 3.7082 -3.3243 -3.5861 23 6 3.3397 -2.7150 -4.7884 24 6 4.0390 -2.9976 -5.9551 25 6 3.6718 -2.3940 -7.1417 26 6 2.6097 -1.5088 -7.1693 27 6 1.9115 -1.2252 -6.0098 28 6 2.2733 -1.8252 -4.8197 29 1 -0.4851 0.8400 -0.0004 30 1 3.8745 -0.6800 0.8912 31 1 3.8751 -0.6804 -0.8888 32 1 3.7758 -2.8050 2.0749 33 1 4.1976 -4.2915 1.1914 34 1 6.5186 -4.7327 0.5188 35 1 8.9069 -4.2466 1.0086 36 1 9.4843 -2.2319 2.3020 37 1 5.4864 -1.1651 2.6251 38 1 4.0348 -4.2376 -3.5855 39 1 4.8717 -3.6852 -5.9332 40 1 4.2153 -2.6130 -8.0489 41 1 2.3249 -1.0378 -8.0985 42 1 1.0822 -0.5337 -6.0349 43 1 1.7278 -1.6030 -3.9145 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000195359944.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:17:37 Heat of formation + Delta-G solvation = 1.175610 kcal Electronic energy + Delta-G solvation = -29048.287613 eV Core-core repulsion = 25058.737725 eV Total energy + Delta-G solvation = -3989.549888 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 339.137 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -42.16871 -41.17630 -40.28579 -39.01356 -37.42027 -35.67579 -34.76261 -33.61312 -32.61169 -31.82778 -30.72305 -30.01512 -28.13671 -25.71930 -24.72746 -24.16734 -23.82372 -23.28336 -22.27402 -20.79656 -19.16879 -19.05968 -18.42658 -18.07558 -17.74701 -17.17625 -17.09749 -16.92278 -16.54933 -16.21822 -16.01634 -15.60702 -15.31090 -14.87115 -14.86129 -14.69211 -14.42416 -14.29163 -14.21538 -13.92253 -13.90474 -13.68901 -13.38256 -12.98566 -12.75629 -12.68530 -12.40405 -12.20728 -12.16412 -12.03963 -11.69754 -11.36854 -10.83850 -10.77007 -10.48230 -10.35903 -9.98490 -9.84478 -9.70452 -9.15835 -8.26691 -6.27049 0.03662 0.11727 0.32432 0.46718 0.64618 1.32736 1.38253 1.41132 1.44581 2.17043 2.34924 2.47638 2.88687 2.92983 3.11119 3.32709 3.51240 3.81582 3.85901 4.01116 4.07432 4.08531 4.08822 4.31398 4.41331 4.52061 4.54856 4.58654 4.60780 4.63635 4.69069 4.84219 4.93989 5.11955 5.19060 5.26433 5.34687 5.37124 5.40608 5.48106 5.55800 5.63991 5.75983 6.00704 6.08374 6.12066 6.34391 6.69259 6.72378 6.99482 7.00856 7.34160 8.90104 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.008958 B = 0.004515 C = 0.003358 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3124.841345 B = 6199.558618 C = 8336.031481 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.944 5.944 2 C 0.027 3.973 3 Si 0.929 3.071 4 H -0.281 1.281 5 H -0.282 1.282 6 H -0.241 1.241 7 C -0.502 4.502 8 H 0.031 0.969 9 C 0.215 3.785 10 N -0.556 5.556 11 C 0.158 3.842 12 C -0.161 4.161 13 C -0.060 4.060 14 C -0.169 4.169 15 C 0.091 3.909 16 N -0.512 5.512 17 C 0.099 3.901 18 C 0.512 3.488 19 O -0.543 6.543 20 C 0.486 3.514 21 O -0.478 6.478 22 N -0.644 5.644 23 C 0.126 3.874 24 C -0.139 4.139 25 C -0.098 4.098 26 C -0.131 4.131 27 C -0.115 4.115 28 C -0.150 4.150 29 H 0.264 0.736 30 H 0.044 0.956 31 H 0.048 0.952 32 H 0.101 0.899 33 H 0.097 0.903 34 H 0.142 0.858 35 H 0.167 0.833 36 H 0.185 0.815 37 H 0.154 0.846 38 H 0.427 0.573 39 H 0.153 0.847 40 H 0.164 0.836 41 H 0.153 0.847 42 H 0.128 0.872 43 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.122 -7.896 -8.132 18.899 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.585 5.585 2 C -0.171 4.171 3 Si 0.754 3.246 4 H -0.207 1.207 5 H -0.207 1.207 6 H -0.164 1.164 7 C -0.540 4.540 8 H 0.050 0.950 9 C 0.093 3.907 10 N -0.285 5.285 11 C 0.036 3.964 12 C -0.164 4.164 13 C -0.086 4.086 14 C -0.188 4.188 15 C -0.066 4.066 16 N -0.220 5.220 17 C -0.057 4.057 18 C 0.294 3.706 19 O -0.423 6.423 20 C 0.268 3.732 21 O -0.349 6.349 22 N -0.293 5.293 23 C 0.033 3.967 24 C -0.159 4.159 25 C -0.116 4.116 26 C -0.150 4.150 27 C -0.134 4.134 28 C -0.170 4.170 29 H 0.073 0.927 30 H 0.062 0.938 31 H 0.066 0.934 32 H 0.120 0.880 33 H 0.116 0.884 34 H 0.160 0.840 35 H 0.185 0.815 36 H 0.202 0.798 37 H 0.172 0.828 38 H 0.266 0.734 39 H 0.171 0.829 40 H 0.182 0.818 41 H 0.170 0.830 42 H 0.146 0.854 43 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges 15.124 -6.794 -7.521 18.206 hybrid contribution -0.846 -0.157 -0.121 0.869 sum 14.278 -6.952 -7.642 17.624 Atomic orbital electron populations 1.70018 1.07957 1.27762 1.52797 1.25468 0.95215 1.02220 0.94191 0.85996 0.80110 0.79930 0.78591 1.20674 1.20742 1.16390 1.21152 0.90366 0.92891 1.49633 0.95047 1.19966 0.93820 0.78385 0.98512 1.47885 1.59736 1.15362 1.05554 1.20463 0.90973 0.99627 0.85354 1.21174 0.96911 0.97461 1.00837 1.21828 0.93058 0.98609 0.95129 1.22488 0.97039 0.99495 0.99823 1.23359 0.99833 0.90288 0.93082 1.67736 1.01583 1.31368 1.21363 1.22814 0.93240 0.94956 0.94708 1.19822 0.80121 0.85476 0.85155 1.90624 1.45537 1.19504 1.86648 1.20479 0.80712 0.86343 0.85686 1.90915 1.39053 1.19706 1.85235 1.43025 1.64452 1.17868 1.03926 1.17994 0.95213 0.97714 0.85828 1.21243 1.00234 1.03279 0.91186 1.21384 0.96738 0.95426 0.98030 1.21508 0.96325 0.98839 0.98298 1.21261 1.00467 0.99413 0.92265 1.21341 0.96960 0.99531 0.99197 0.92665 0.93800 0.93434 0.88027 0.88437 0.83980 0.81507 0.79818 0.82846 0.73368 0.82940 0.81820 0.82956 0.85437 0.88037 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -58.67 13.96 21.45 0.30 -58.37 16 2 C 0.03 1.56 5.47 84.66 0.46 2.02 16 3 Si 0.93 44.50 27.47 68.60 1.88 46.39 16 4 H -0.28 -13.75 7.11 99.48 0.71 -13.04 16 5 H -0.28 -13.17 7.11 99.48 0.71 -12.47 16 6 H -0.24 -10.41 6.54 99.48 0.65 -9.76 16 7 C -0.50 -27.83 8.35 25.60 0.21 -27.62 16 8 H 0.03 1.96 8.06 -2.91 -0.02 1.94 16 9 C 0.21 9.83 3.83 85.63 0.33 10.16 16 10 N -0.56 -21.97 2.46 -832.20 -2.05 -24.01 16 11 C 0.16 5.10 5.49 85.64 0.47 5.57 16 12 C -0.16 -4.68 5.48 -19.77 -0.11 -4.79 16 13 C -0.06 -1.51 9.74 22.47 0.22 -1.29 16 14 C -0.17 -3.43 10.11 22.36 0.23 -3.20 16 15 C 0.09 2.01 11.18 84.69 0.95 2.95 16 16 N -0.51 -14.63 10.36 -195.85 -2.03 -16.66 16 17 C 0.10 2.96 10.86 84.67 0.92 3.88 16 18 C 0.51 19.91 7.67 87.24 0.67 20.58 16 19 O -0.54 -19.63 15.44 -3.29 -0.05 -19.68 16 20 C 0.49 19.58 7.57 87.24 0.66 20.24 16 21 O -0.48 -22.86 9.57 -3.29 -0.03 -22.90 16 22 N -0.64 -20.75 5.32 -304.84 -1.62 -22.37 16 23 C 0.13 3.94 6.29 38.21 0.24 4.18 16 24 C -0.14 -3.14 9.97 22.40 0.22 -2.92 16 25 C -0.10 -1.84 10.04 22.25 0.22 -1.62 16 26 C -0.13 -2.81 10.04 22.29 0.22 -2.58 16 27 C -0.12 -3.35 10.04 22.25 0.22 -3.13 16 28 C -0.15 -5.41 8.70 22.40 0.19 -5.22 16 29 H 0.26 15.49 8.31 -92.71 -0.77 14.72 16 30 H 0.04 1.90 7.08 -2.38 -0.02 1.89 16 31 H 0.05 2.32 5.27 -2.39 -0.01 2.31 16 32 H 0.10 3.20 8.02 -2.39 -0.02 3.18 16 33 H 0.10 2.97 7.45 -2.39 -0.02 2.96 16 34 H 0.14 3.49 7.49 -2.91 -0.02 3.47 16 35 H 0.17 2.16 8.06 -2.91 -0.02 2.14 16 36 H 0.18 2.68 8.06 -2.91 -0.02 2.66 16 37 H 0.15 4.47 8.06 -2.91 -0.02 4.44 16 38 H 0.43 11.26 8.30 -92.71 -0.77 10.49 16 39 H 0.15 2.51 8.06 -2.91 -0.02 2.48 16 40 H 0.16 1.80 8.06 -2.91 -0.02 1.77 16 41 H 0.15 2.24 8.06 -2.91 -0.02 2.22 16 42 H 0.13 3.45 8.06 -2.91 -0.02 3.42 16 43 H 0.10 4.59 6.24 -2.91 -0.02 4.57 16 Total: -1.00 -73.97 368.76 2.97 -71.00 By element: Atomic # 1 Polarization: 29.15 SS G_CDS: 0.23 Total: 29.38 kcal Atomic # 6 Polarization: 10.88 SS G_CDS: 6.34 Total: 17.22 kcal Atomic # 7 Polarization: -116.02 SS G_CDS: -5.40 Total: -121.41 kcal Atomic # 8 Polarization: -42.50 SS G_CDS: -0.08 Total: -42.58 kcal Atomic # 14 Polarization: 44.50 SS G_CDS: 1.88 Total: 46.39 kcal Total: -73.97 2.97 -71.00 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000195359944.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.176 kcal (2) G-P(sol) polarization free energy of solvation -73.973 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.797 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.972 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.000 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.176 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds