Wall clock time and date at job start Tue Mar 31 2020 22:17:37
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.31507 * 1
3 3 Si 1.86796 * 120.00076 * 2 1
4 4 H 1.48506 * 109.47183 * 269.99329 * 3 2 1
5 5 H 1.48502 * 109.47355 * 29.99487 * 3 2 1
6 6 H 1.48497 * 109.47573 * 149.99576 * 3 2 1
7 7 C 1.37876 * 120.00080 * 179.97438 * 2 1 3
8 8 H 1.07996 * 120.00030 * 0.02562 * 7 2 1
9 9 C 1.50699 * 120.00255 * 180.02562 * 7 2 1
10 10 N 1.46497 * 109.47496 * 179.97438 * 9 7 2
11 11 C 1.46497 * 120.00311 * 263.68502 * 10 9 7
12 12 C 1.50708 * 109.46946 * 269.99649 * 11 10 9
13 13 C 1.38668 * 120.41824 * 269.71924 * 12 11 10
14 14 C 1.38633 * 118.42054 * 179.78045 * 13 12 11
15 15 C 1.38223 * 119.15668 * 0.51931 * 14 13 12
16 16 N 1.31856 * 120.76754 * 359.72338 * 15 14 13
17 17 C 1.31886 * 121.72158 * 359.97438 * 16 15 14
18 18 C 1.34778 * 119.99580 * 83.68251 * 10 9 7
19 19 O 1.21364 * 119.99844 * 174.64311 * 18 10 9
20 20 C 1.49353 * 119.99978 * 354.63576 * 18 10 9
21 21 O 1.21365 * 120.00341 * 0.30637 * 20 18 10
22 22 N 1.34778 * 119.99578 * 180.30513 * 20 18 10
23 23 C 1.39730 * 119.99755 * 184.82797 * 22 20 18
24 24 C 1.38931 * 120.07613 * 144.61451 * 23 22 20
25 25 C 1.38097 * 119.92241 * 179.97438 * 24 23 22
26 26 C 1.38290 * 120.07561 * 0.02562 * 25 24 23
27 27 C 1.38290 * 120.15318 * 359.97438 * 26 25 24
28 28 C 1.38095 * 120.07708 * 0.02562 * 27 26 25
29 29 H 0.97002 * 120.00396 * 0.02562 * 1 2 3
30 30 H 1.09005 * 109.47321 * 60.00061 * 9 7 2
31 31 H 1.09002 * 109.47022 * 300.00340 * 9 7 2
32 32 H 1.08994 * 109.47369 * 29.99318 * 11 10 9
33 33 H 1.08997 * 109.47244 * 149.99647 * 11 10 9
34 34 H 1.08003 * 120.79108 * 0.02562 * 13 12 11
35 35 H 1.07995 * 120.41957 * 180.22156 * 14 13 12
36 36 H 1.07999 * 119.61607 * 179.74778 * 15 14 13
37 37 H 1.08003 * 119.61346 * 179.97438 * 17 16 15
38 38 H 0.96996 * 120.00714 * 4.82077 * 22 20 18
39 39 H 1.08005 * 120.03558 * 359.70049 * 24 23 22
40 40 H 1.08001 * 119.95954 * 179.97438 * 25 24 23
41 41 H 1.08002 * 119.92483 * 179.97438 * 26 25 24
42 42 H 1.08004 * 119.96492 * 180.02562 * 27 26 25
43 43 H 1.08005 * 120.03983 * 179.97438 * 28 27 26
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3151 0.0000 0.0000
3 14 2.2491 1.6177 0.0000
4 1 2.4967 2.0463 -1.4001
5 1 1.4465 2.6527 0.6999
6 1 3.5466 1.4402 0.7001
7 6 2.0045 -1.1940 0.0005
8 1 1.4645 -2.1293 0.0005
9 6 3.5115 -1.1941 0.0011
10 7 3.9998 -2.5752 0.0022
11 6 4.3751 -3.2185 1.2638
12 6 5.8354 -2.9685 1.5402
13 6 6.7986 -3.8537 1.0804
14 6 8.1299 -3.5809 1.3543
15 6 8.4498 -2.4494 2.0809
16 7 7.5067 -1.6322 2.5067
17 6 6.2308 -1.8570 2.2596
18 6 4.1038 -3.2541 -1.1574
19 8 4.5988 -4.3622 -1.1696
20 6 3.6098 -2.6428 -2.4274
21 8 3.1197 -1.5326 -2.4161
22 7 3.7082 -3.3243 -3.5861
23 6 3.3397 -2.7150 -4.7884
24 6 4.0390 -2.9976 -5.9551
25 6 3.6718 -2.3940 -7.1417
26 6 2.6097 -1.5088 -7.1693
27 6 1.9115 -1.2252 -6.0098
28 6 2.2733 -1.8252 -4.8197
29 1 -0.4851 0.8400 -0.0004
30 1 3.8745 -0.6800 0.8912
31 1 3.8751 -0.6804 -0.8888
32 1 3.7758 -2.8050 2.0749
33 1 4.1976 -4.2915 1.1914
34 1 6.5186 -4.7327 0.5188
35 1 8.9069 -4.2466 1.0086
36 1 9.4843 -2.2319 2.3020
37 1 5.4864 -1.1651 2.6251
38 1 4.0348 -4.2376 -3.5855
39 1 4.8717 -3.6852 -5.9332
40 1 4.2153 -2.6130 -8.0489
41 1 2.3249 -1.0378 -8.0985
42 1 1.0822 -0.5337 -6.0349
43 1 1.7278 -1.6030 -3.9145
RHF calculation, no. of doubly occupied orbitals= 62
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000195359944.mol2 43
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 22:17:37
Heat of formation + Delta-G solvation = 1.175610 kcal
Electronic energy + Delta-G solvation = -29048.287613 eV
Core-core repulsion = 25058.737725 eV
Total energy + Delta-G solvation = -3989.549888 eV
No. of doubly occupied orbitals = 62
Molecular weight
(most abundant/longest-lived isotopes) = 339.137 amu
Computer time = 0.82 seconds
Orbital eigenvalues (eV)
-42.16871 -41.17630 -40.28579 -39.01356 -37.42027 -35.67579 -34.76261 -33.61312
-32.61169 -31.82778 -30.72305 -30.01512 -28.13671 -25.71930 -24.72746 -24.16734
-23.82372 -23.28336 -22.27402 -20.79656 -19.16879 -19.05968 -18.42658 -18.07558
-17.74701 -17.17625 -17.09749 -16.92278 -16.54933 -16.21822 -16.01634 -15.60702
-15.31090 -14.87115 -14.86129 -14.69211 -14.42416 -14.29163 -14.21538 -13.92253
-13.90474 -13.68901 -13.38256 -12.98566 -12.75629 -12.68530 -12.40405 -12.20728
-12.16412 -12.03963 -11.69754 -11.36854 -10.83850 -10.77007 -10.48230 -10.35903
-9.98490 -9.84478 -9.70452 -9.15835 -8.26691 -6.27049 0.03662 0.11727
0.32432 0.46718 0.64618 1.32736 1.38253 1.41132 1.44581 2.17043
2.34924 2.47638 2.88687 2.92983 3.11119 3.32709 3.51240 3.81582
3.85901 4.01116 4.07432 4.08531 4.08822 4.31398 4.41331 4.52061
4.54856 4.58654 4.60780 4.63635 4.69069 4.84219 4.93989 5.11955
5.19060 5.26433 5.34687 5.37124 5.40608 5.48106 5.55800 5.63991
5.75983 6.00704 6.08374 6.12066 6.34391 6.69259 6.72378 6.99482
7.00856 7.34160 8.90104
Molecular weight = 339.14amu
Principal moments of inertia in cm(-1)
A = 0.008958 B = 0.004515 C = 0.003358
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 3124.841345 B = 6199.558618 C = 8336.031481
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.944 5.944
2 C 0.027 3.973
3 Si 0.929 3.071
4 H -0.281 1.281
5 H -0.282 1.282
6 H -0.241 1.241
7 C -0.502 4.502
8 H 0.031 0.969
9 C 0.215 3.785
10 N -0.556 5.556
11 C 0.158 3.842
12 C -0.161 4.161
13 C -0.060 4.060
14 C -0.169 4.169
15 C 0.091 3.909
16 N -0.512 5.512
17 C 0.099 3.901
18 C 0.512 3.488
19 O -0.543 6.543
20 C 0.486 3.514
21 O -0.478 6.478
22 N -0.644 5.644
23 C 0.126 3.874
24 C -0.139 4.139
25 C -0.098 4.098
26 C -0.131 4.131
27 C -0.115 4.115
28 C -0.150 4.150
29 H 0.264 0.736
30 H 0.044 0.956
31 H 0.048 0.952
32 H 0.101 0.899
33 H 0.097 0.903
34 H 0.142 0.858
35 H 0.167 0.833
36 H 0.185 0.815
37 H 0.154 0.846
38 H 0.427 0.573
39 H 0.153 0.847
40 H 0.164 0.836
41 H 0.153 0.847
42 H 0.128 0.872
43 H 0.101 0.899
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 15.122 -7.896 -8.132 18.899
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.585 5.585
2 C -0.171 4.171
3 Si 0.754 3.246
4 H -0.207 1.207
5 H -0.207 1.207
6 H -0.164 1.164
7 C -0.540 4.540
8 H 0.050 0.950
9 C 0.093 3.907
10 N -0.285 5.285
11 C 0.036 3.964
12 C -0.164 4.164
13 C -0.086 4.086
14 C -0.188 4.188
15 C -0.066 4.066
16 N -0.220 5.220
17 C -0.057 4.057
18 C 0.294 3.706
19 O -0.423 6.423
20 C 0.268 3.732
21 O -0.349 6.349
22 N -0.293 5.293
23 C 0.033 3.967
24 C -0.159 4.159
25 C -0.116 4.116
26 C -0.150 4.150
27 C -0.134 4.134
28 C -0.170 4.170
29 H 0.073 0.927
30 H 0.062 0.938
31 H 0.066 0.934
32 H 0.120 0.880
33 H 0.116 0.884
34 H 0.160 0.840
35 H 0.185 0.815
36 H 0.202 0.798
37 H 0.172 0.828
38 H 0.266 0.734
39 H 0.171 0.829
40 H 0.182 0.818
41 H 0.170 0.830
42 H 0.146 0.854
43 H 0.120 0.880
Dipole moment (debyes) X Y Z Total
from point charges 15.124 -6.794 -7.521 18.206
hybrid contribution -0.846 -0.157 -0.121 0.869
sum 14.278 -6.952 -7.642 17.624
Atomic orbital electron populations
1.70018 1.07957 1.27762 1.52797 1.25468 0.95215 1.02220 0.94191
0.85996 0.80110 0.79930 0.78591 1.20674 1.20742 1.16390 1.21152
0.90366 0.92891 1.49633 0.95047 1.19966 0.93820 0.78385 0.98512
1.47885 1.59736 1.15362 1.05554 1.20463 0.90973 0.99627 0.85354
1.21174 0.96911 0.97461 1.00837 1.21828 0.93058 0.98609 0.95129
1.22488 0.97039 0.99495 0.99823 1.23359 0.99833 0.90288 0.93082
1.67736 1.01583 1.31368 1.21363 1.22814 0.93240 0.94956 0.94708
1.19822 0.80121 0.85476 0.85155 1.90624 1.45537 1.19504 1.86648
1.20479 0.80712 0.86343 0.85686 1.90915 1.39053 1.19706 1.85235
1.43025 1.64452 1.17868 1.03926 1.17994 0.95213 0.97714 0.85828
1.21243 1.00234 1.03279 0.91186 1.21384 0.96738 0.95426 0.98030
1.21508 0.96325 0.98839 0.98298 1.21261 1.00467 0.99413 0.92265
1.21341 0.96960 0.99531 0.99197 0.92665 0.93800 0.93434 0.88027
0.88437 0.83980 0.81507 0.79818 0.82846 0.73368 0.82940 0.81820
0.82956 0.85437 0.88037
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.94 -58.67 13.96 21.45 0.30 -58.37 16
2 C 0.03 1.56 5.47 84.66 0.46 2.02 16
3 Si 0.93 44.50 27.47 68.60 1.88 46.39 16
4 H -0.28 -13.75 7.11 99.48 0.71 -13.04 16
5 H -0.28 -13.17 7.11 99.48 0.71 -12.47 16
6 H -0.24 -10.41 6.54 99.48 0.65 -9.76 16
7 C -0.50 -27.83 8.35 25.60 0.21 -27.62 16
8 H 0.03 1.96 8.06 -2.91 -0.02 1.94 16
9 C 0.21 9.83 3.83 85.63 0.33 10.16 16
10 N -0.56 -21.97 2.46 -832.20 -2.05 -24.01 16
11 C 0.16 5.10 5.49 85.64 0.47 5.57 16
12 C -0.16 -4.68 5.48 -19.77 -0.11 -4.79 16
13 C -0.06 -1.51 9.74 22.47 0.22 -1.29 16
14 C -0.17 -3.43 10.11 22.36 0.23 -3.20 16
15 C 0.09 2.01 11.18 84.69 0.95 2.95 16
16 N -0.51 -14.63 10.36 -195.85 -2.03 -16.66 16
17 C 0.10 2.96 10.86 84.67 0.92 3.88 16
18 C 0.51 19.91 7.67 87.24 0.67 20.58 16
19 O -0.54 -19.63 15.44 -3.29 -0.05 -19.68 16
20 C 0.49 19.58 7.57 87.24 0.66 20.24 16
21 O -0.48 -22.86 9.57 -3.29 -0.03 -22.90 16
22 N -0.64 -20.75 5.32 -304.84 -1.62 -22.37 16
23 C 0.13 3.94 6.29 38.21 0.24 4.18 16
24 C -0.14 -3.14 9.97 22.40 0.22 -2.92 16
25 C -0.10 -1.84 10.04 22.25 0.22 -1.62 16
26 C -0.13 -2.81 10.04 22.29 0.22 -2.58 16
27 C -0.12 -3.35 10.04 22.25 0.22 -3.13 16
28 C -0.15 -5.41 8.70 22.40 0.19 -5.22 16
29 H 0.26 15.49 8.31 -92.71 -0.77 14.72 16
30 H 0.04 1.90 7.08 -2.38 -0.02 1.89 16
31 H 0.05 2.32 5.27 -2.39 -0.01 2.31 16
32 H 0.10 3.20 8.02 -2.39 -0.02 3.18 16
33 H 0.10 2.97 7.45 -2.39 -0.02 2.96 16
34 H 0.14 3.49 7.49 -2.91 -0.02 3.47 16
35 H 0.17 2.16 8.06 -2.91 -0.02 2.14 16
36 H 0.18 2.68 8.06 -2.91 -0.02 2.66 16
37 H 0.15 4.47 8.06 -2.91 -0.02 4.44 16
38 H 0.43 11.26 8.30 -92.71 -0.77 10.49 16
39 H 0.15 2.51 8.06 -2.91 -0.02 2.48 16
40 H 0.16 1.80 8.06 -2.91 -0.02 1.77 16
41 H 0.15 2.24 8.06 -2.91 -0.02 2.22 16
42 H 0.13 3.45 8.06 -2.91 -0.02 3.42 16
43 H 0.10 4.59 6.24 -2.91 -0.02 4.57 16
Total: -1.00 -73.97 368.76 2.97 -71.00
By element:
Atomic # 1 Polarization: 29.15 SS G_CDS: 0.23 Total: 29.38 kcal
Atomic # 6 Polarization: 10.88 SS G_CDS: 6.34 Total: 17.22 kcal
Atomic # 7 Polarization: -116.02 SS G_CDS: -5.40 Total: -121.41 kcal
Atomic # 8 Polarization: -42.50 SS G_CDS: -0.08 Total: -42.58 kcal
Atomic # 14 Polarization: 44.50 SS G_CDS: 1.88 Total: 46.39 kcal
Total: -73.97 2.97 -71.00 kcal
The number of atoms in the molecule is 43
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000195359944.mol2 43
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 72.176 kcal
(2) G-P(sol) polarization free energy of solvation -73.973 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.797 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.972 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.000 kcal
(6) G-S(sol) free energy of system = (1) + (5) 1.176 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.82 seconds