Wall clock time and date at job start Tue Mar 31 2020 23:22:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81003 * 1 3 3 C 1.76202 * 99.99981 * 2 1 4 4 N 1.32551 * 119.19698 * 179.97438 * 3 2 1 5 5 C 1.32419 * 120.88125 * 179.97438 * 4 3 2 6 6 C 1.50702 * 120.36160 * 179.97438 * 5 4 3 7 7 C 1.38256 * 119.27318 * 0.02562 * 5 4 3 8 8 C 1.50701 * 120.74016 * 180.02562 * 7 5 4 9 9 C 1.53000 * 109.47026 * 269.97716 * 8 7 5 10 10 C 1.50701 * 109.47026 * 180.02562 * 9 8 7 11 11 O 1.21277 * 120.00038 * 359.97438 * 10 9 8 12 12 N 1.34772 * 119.99675 * 179.97438 * 10 9 8 13 13 C 1.46501 * 120.00572 * 359.97438 * 12 10 9 14 14 C 1.46506 * 120.00072 * 179.97438 * 12 10 9 15 15 H 1.09004 * 109.46892 * 0.02562 * 14 12 10 16 16 C 1.52999 * 109.47439 * 240.00283 * 14 12 10 17 17 C 1.50703 * 109.46928 * 120.00072 * 14 12 10 18 18 H 1.07998 * 120.00253 * 0.02562 * 17 14 12 19 19 C 1.37881 * 119.99594 * 180.02562 * 17 14 12 20 20 N 1.31509 * 120.00163 * 359.97438 * 19 17 14 21 21 Si 1.86801 * 119.99709 * 180.02562 * 19 17 14 22 22 H 1.48497 * 109.47370 * 89.99505 * 21 19 17 23 23 H 1.48505 * 109.47089 * 210.00048 * 21 19 17 24 24 H 1.48502 * 109.47080 * 329.99367 * 21 19 17 25 25 C 1.39408 * 118.52015 * 359.97438 * 7 5 4 26 26 O 1.35512 * 120.46311 * 180.02562 * 25 7 5 27 27 N 1.32530 * 119.18969 * 0.26932 * 3 2 1 28 28 H 1.09001 * 109.46917 * 180.02562 * 1 2 3 29 29 H 1.08996 * 109.47067 * 300.00154 * 1 2 3 30 30 H 1.08999 * 109.46822 * 60.00796 * 1 2 3 31 31 H 1.08999 * 109.46919 * 270.02821 * 6 5 4 32 32 H 1.09001 * 109.46797 * 30.02206 * 6 5 4 33 33 H 1.08994 * 109.46792 * 150.02285 * 6 5 4 34 34 H 1.08997 * 109.47041 * 29.97123 * 8 7 5 35 35 H 1.08995 * 109.46911 * 149.97377 * 8 7 5 36 36 H 1.09006 * 109.46844 * 300.00201 * 9 8 7 37 37 H 1.08994 * 109.47414 * 59.99519 * 9 8 7 38 38 H 1.09005 * 109.46997 * 89.99583 * 13 12 10 39 39 H 1.08998 * 109.47686 * 209.99632 * 13 12 10 40 40 H 1.09000 * 109.46835 * 329.99916 * 13 12 10 41 41 H 1.08997 * 109.46914 * 299.99499 * 16 14 12 42 42 H 1.09000 * 109.47058 * 59.99908 * 16 14 12 43 43 H 1.08993 * 109.47036 * 180.02562 * 16 14 12 44 44 H 0.97003 * 120.00171 * 179.97438 * 20 19 17 45 45 H 0.96700 * 114.00230 * 90.00118 * 26 25 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8100 0.0000 0.0000 3 6 2.1160 1.7353 0.0000 4 7 3.3678 2.1711 0.0005 5 6 3.6360 3.4679 0.0000 6 6 5.0636 3.9505 0.0012 7 6 2.5919 4.3741 -0.0005 8 6 2.8592 5.8572 -0.0016 9 6 2.9493 6.3603 1.4405 10 6 3.2160 7.8435 1.4393 11 8 3.3238 8.4394 0.3886 12 7 3.3346 8.5077 2.6060 13 6 3.2037 7.7880 3.8753 14 6 3.5944 9.9495 2.6050 15 1 3.6592 10.3063 1.5770 16 6 4.9137 10.2306 3.3270 17 6 2.4719 10.6627 3.3140 18 1 1.6477 10.0984 3.7246 19 6 2.4973 12.0356 3.4383 20 7 3.5012 12.7227 2.9387 21 14 1.1063 12.9196 4.3177 22 1 1.4265 13.0312 5.7635 23 1 0.9403 14.2780 3.7411 24 1 -0.1537 12.1523 4.1475 25 6 1.2863 3.8854 -0.0010 26 8 0.2333 4.7385 -0.0021 27 7 1.0888 2.5727 0.0054 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3633 0.5138 0.8899 30 1 -0.3633 0.5137 -0.8901 31 1 5.4069 4.0669 1.0292 32 1 5.6932 3.2235 -0.5119 33 1 5.1232 4.9098 -0.5128 34 1 3.7996 6.0565 -0.5153 35 1 2.0479 6.3722 -0.5161 36 1 2.0088 6.1609 1.9542 37 1 3.7604 5.8453 1.9550 38 1 4.1827 7.4272 4.1910 39 1 2.8020 8.4595 4.6341 40 1 2.5292 6.9417 3.7452 41 1 4.8485 9.8740 4.3549 42 1 5.7255 9.7147 2.8141 43 1 5.1067 11.3033 3.3266 44 1 3.5188 13.6887 3.0259 45 1 -0.0718 4.9856 -0.8858 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000264092649.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:22:12 Heat of formation + Delta-G solvation = -35.939551 kcal Electronic energy + Delta-G solvation = -27177.952669 eV Core-core repulsion = 23322.237299 eV Total energy + Delta-G solvation = -3855.715370 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -41.49257 -39.13681 -37.91931 -35.71733 -35.08888 -33.43791 -32.83495 -30.83140 -29.57237 -29.32353 -28.32979 -26.16690 -25.60154 -25.20290 -23.14670 -22.59257 -20.71670 -19.33667 -18.43930 -18.26960 -17.48667 -16.70059 -16.27641 -16.01821 -15.38468 -15.18408 -15.04973 -14.57092 -14.38154 -14.05861 -13.93040 -13.86912 -13.38627 -13.12741 -13.00257 -12.89804 -12.63773 -12.52472 -12.27726 -12.24224 -11.98409 -11.60667 -11.47982 -11.26959 -11.09654 -10.99131 -10.81229 -10.71745 -10.60894 -10.55293 -10.27752 -10.18231 -9.92214 -9.59494 -9.19695 -8.94086 -8.44147 -8.05362 -7.60299 -6.08777 -4.16696 0.42967 0.67052 0.89505 1.76364 3.05535 3.25013 3.31513 3.32472 3.34176 3.38985 3.90506 3.93599 4.31778 4.38024 4.58493 4.64528 4.79985 4.86379 4.99309 5.12749 5.21360 5.22396 5.27708 5.37365 5.46821 5.47812 5.58207 5.63851 5.81679 5.89303 5.99836 6.09272 6.23325 6.36261 6.58350 6.74032 6.82078 7.05393 7.09603 7.40780 7.52365 7.56202 7.70595 8.00349 8.18918 8.52244 8.81745 9.04123 9.49852 10.96480 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.021149 B = 0.002366 C = 0.002247 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1323.616733 B =11830.152923 C =12459.249853 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 S 0.002 5.998 3 C 0.313 3.687 4 N -0.506 5.506 5 C 0.205 3.795 6 C -0.113 4.113 7 C -0.202 4.202 8 C -0.050 4.050 9 C -0.132 4.132 10 C 0.505 3.495 11 O -0.555 6.555 12 N -0.593 5.593 13 C 0.083 3.917 14 C 0.257 3.743 15 H 0.063 0.937 16 C -0.146 4.146 17 C -0.526 4.526 18 H 0.059 0.941 19 C 0.064 3.936 20 N -0.887 5.887 21 Si 0.898 3.102 22 H -0.280 1.280 23 H -0.285 1.285 24 H -0.274 1.274 25 C 0.379 3.621 26 O -0.467 6.467 27 N -0.549 5.549 28 H 0.106 0.894 29 H 0.091 0.909 30 H 0.090 0.910 31 H 0.091 0.909 32 H 0.085 0.915 33 H 0.091 0.909 34 H 0.089 0.911 35 H 0.086 0.914 36 H 0.089 0.911 37 H 0.084 0.916 38 H 0.042 0.958 39 H 0.080 0.920 40 H 0.053 0.947 41 H 0.029 0.971 42 H 0.010 0.990 43 H 0.093 0.907 44 H 0.263 0.737 45 H 0.409 0.591 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.137 -23.171 -5.475 23.904 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.313 4.313 2 S 0.235 5.765 3 C -0.063 4.063 4 N -0.225 5.225 5 C 0.057 3.943 6 C -0.170 4.170 7 C -0.211 4.211 8 C -0.089 4.089 9 C -0.172 4.172 10 C 0.292 3.708 11 O -0.435 6.435 12 N -0.323 5.323 13 C -0.061 4.061 14 C 0.157 3.843 15 H 0.081 0.919 16 C -0.204 4.204 17 C -0.564 4.564 18 H 0.077 0.923 19 C -0.138 4.138 20 N -0.526 5.526 21 Si 0.726 3.274 22 H -0.206 1.206 23 H -0.211 1.211 24 H -0.199 1.199 25 C 0.189 3.811 26 O -0.275 6.275 27 N -0.278 5.278 28 H 0.124 0.876 29 H 0.110 0.890 30 H 0.109 0.891 31 H 0.110 0.890 32 H 0.104 0.896 33 H 0.110 0.890 34 H 0.107 0.893 35 H 0.104 0.896 36 H 0.108 0.892 37 H 0.103 0.897 38 H 0.061 0.939 39 H 0.099 0.901 40 H 0.071 0.929 41 H 0.048 0.952 42 H 0.030 0.970 43 H 0.111 0.889 44 H 0.073 0.927 45 H 0.269 0.731 Dipole moment (debyes) X Y Z Total from point charges -1.472 -24.583 -5.418 25.216 hybrid contribution -1.764 2.538 0.299 3.105 sum -3.236 -22.045 -5.119 22.862 Atomic orbital electron populations 1.23565 0.94074 1.06303 1.07357 1.85817 1.06851 0.93129 1.90664 1.24635 0.86241 1.00029 0.95401 1.68344 1.20710 1.16522 1.16932 1.21608 0.97050 0.87220 0.88395 1.20925 0.89114 1.02567 1.04364 1.21660 0.93174 0.99569 1.06714 1.20145 1.04499 0.87180 0.97053 1.21632 1.03615 0.94494 0.97455 1.20293 0.77648 0.88609 0.84286 1.90641 1.52075 1.69735 1.31032 1.48243 1.68401 1.11223 1.04479 1.21604 0.99856 0.96653 0.87984 1.18940 0.93248 0.73274 0.98850 0.91884 1.22078 0.96386 1.04073 0.97891 1.21322 1.06330 0.91809 1.36986 0.92286 1.24893 0.96072 0.97325 0.95501 1.69876 1.30423 1.07183 1.45087 0.86501 0.82327 0.79032 0.79574 1.20620 1.21088 1.19933 1.19218 0.86148 0.85736 0.90009 1.84748 1.47773 1.60773 1.34198 1.68239 1.35944 1.04103 1.19516 0.87576 0.89015 0.89132 0.89044 0.89628 0.89023 0.89276 0.89577 0.89228 0.89723 0.93897 0.90094 0.92875 0.95212 0.97042 0.88862 0.92684 0.73148 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.00 9.62 101.05 0.97 -0.03 16 2 S 0.00 0.02 22.89 -107.50 -2.46 -2.44 16 3 C 0.31 3.89 7.85 -90.87 -0.71 3.17 16 4 N -0.51 -6.47 10.33 -9.73 -0.10 -6.57 16 5 C 0.20 2.38 6.82 -82.33 -0.56 1.82 16 6 C -0.11 -1.00 9.83 36.01 0.35 -0.65 16 7 C -0.20 -2.40 5.18 -104.18 -0.54 -2.94 16 8 C -0.05 -0.63 4.08 -27.88 -0.11 -0.75 16 9 C -0.13 -1.87 4.24 -27.88 -0.12 -1.99 16 10 C 0.50 9.94 7.67 -10.99 -0.08 9.86 16 11 O -0.56 -12.94 15.31 5.56 0.09 -12.86 16 12 N -0.59 -12.39 2.75 -175.25 -0.48 -12.87 16 13 C 0.08 1.38 9.24 59.85 0.55 1.94 16 14 C 0.26 6.49 2.64 -69.08 -0.18 6.31 16 15 H 0.06 1.85 6.90 -51.93 -0.36 1.49 16 16 C -0.15 -3.46 8.97 37.16 0.33 -3.12 16 17 C -0.53 -14.11 7.99 -34.44 -0.28 -14.39 16 18 H 0.06 1.56 7.33 -52.49 -0.38 1.18 16 19 C 0.06 1.75 5.30 -17.82 -0.09 1.65 16 20 N -0.89 -24.96 11.32 55.43 0.63 -24.33 16 21 Si 0.90 20.95 29.54 -169.99 -5.02 15.93 16 22 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 23 H -0.29 -6.65 7.11 56.52 0.40 -6.25 16 24 H -0.27 -6.38 7.11 56.52 0.40 -5.98 16 25 C 0.38 4.62 7.80 -16.72 -0.13 4.49 16 26 O -0.47 -5.08 12.74 -18.23 -0.23 -5.32 16 27 N -0.55 -6.87 9.16 -13.50 -0.12 -7.00 16 28 H 0.11 0.47 8.14 -51.92 -0.42 0.05 16 29 H 0.09 0.71 8.11 -51.92 -0.42 0.29 16 30 H 0.09 0.65 8.11 -51.92 -0.42 0.23 16 31 H 0.09 0.74 8.14 -51.93 -0.42 0.32 16 32 H 0.08 0.68 8.14 -51.93 -0.42 0.26 16 33 H 0.09 0.77 6.06 -51.93 -0.31 0.46 16 34 H 0.09 1.10 6.02 -51.93 -0.31 0.79 16 35 H 0.09 1.14 7.58 -51.93 -0.39 0.74 16 36 H 0.09 1.26 7.40 -51.93 -0.38 0.87 16 37 H 0.08 1.04 8.11 -51.93 -0.42 0.62 16 38 H 0.04 0.63 8.14 -51.93 -0.42 0.21 16 39 H 0.08 1.44 7.02 -51.93 -0.36 1.08 16 40 H 0.05 0.74 6.44 -51.93 -0.33 0.40 16 41 H 0.03 0.65 7.67 -51.93 -0.40 0.25 16 42 H 0.01 0.24 8.14 -51.93 -0.42 -0.19 16 43 H 0.09 2.43 6.07 -51.93 -0.32 2.12 16 44 H 0.26 7.04 8.31 -40.82 -0.34 6.70 16 45 H 0.41 2.49 9.06 45.56 0.41 2.91 16 LS Contribution 383.50 15.07 5.78 5.78 Total: -1.00 -33.57 383.50 -8.19 -41.76 By element: Atomic # 1 Polarization: 8.19 SS G_CDS: -5.66 Total: 2.53 kcal Atomic # 6 Polarization: 5.99 SS G_CDS: -0.60 Total: 5.38 kcal Atomic # 7 Polarization: -50.69 SS G_CDS: -0.08 Total: -50.77 kcal Atomic # 8 Polarization: -18.03 SS G_CDS: -0.15 Total: -18.18 kcal Atomic # 14 Polarization: 20.95 SS G_CDS: -5.02 Total: 15.93 kcal Atomic # 16 Polarization: 0.02 SS G_CDS: -2.46 Total: -2.44 kcal Total LS contribution 5.78 Total: 5.78 kcal Total: -33.57 -8.19 -41.76 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000264092649.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.822 kcal (2) G-P(sol) polarization free energy of solvation -33.571 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.750 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.190 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.761 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.940 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds