Wall clock time and date at job start Tue Mar 31 2020 23:22:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81003 * 1 3 3 C 1.76202 * 99.99981 * 2 1 4 4 N 1.32551 * 119.19698 * 179.97438 * 3 2 1 5 5 C 1.32419 * 120.88125 * 179.97438 * 4 3 2 6 6 C 1.50702 * 120.36160 * 179.97438 * 5 4 3 7 7 C 1.38256 * 119.27318 * 0.02562 * 5 4 3 8 8 C 1.50701 * 120.74016 * 180.02562 * 7 5 4 9 9 C 1.53000 * 109.47026 * 269.97716 * 8 7 5 10 10 C 1.50701 * 109.47026 * 180.02562 * 9 8 7 11 11 O 1.21277 * 120.00038 * 359.97438 * 10 9 8 12 12 N 1.34772 * 119.99675 * 179.97438 * 10 9 8 13 13 C 1.46501 * 120.00572 * 359.97438 * 12 10 9 14 14 C 1.46506 * 120.00072 * 179.97438 * 12 10 9 15 15 H 1.09004 * 109.46892 * 0.02562 * 14 12 10 16 16 C 1.52999 * 109.47439 * 240.00283 * 14 12 10 17 17 C 1.50703 * 109.46928 * 120.00072 * 14 12 10 18 18 H 1.07998 * 120.00253 * 0.02562 * 17 14 12 19 19 C 1.37881 * 119.99594 * 180.02562 * 17 14 12 20 20 N 1.31509 * 120.00163 * 359.97438 * 19 17 14 21 21 Si 1.86801 * 119.99709 * 180.02562 * 19 17 14 22 22 H 1.48497 * 109.47370 * 89.99505 * 21 19 17 23 23 H 1.48505 * 109.47089 * 210.00048 * 21 19 17 24 24 H 1.48502 * 109.47080 * 329.99367 * 21 19 17 25 25 C 1.39408 * 118.52015 * 359.97438 * 7 5 4 26 26 O 1.35512 * 120.46311 * 180.02562 * 25 7 5 27 27 N 1.32530 * 119.18969 * 0.26932 * 3 2 1 28 28 H 1.09001 * 109.46917 * 180.02562 * 1 2 3 29 29 H 1.08996 * 109.47067 * 300.00154 * 1 2 3 30 30 H 1.08999 * 109.46822 * 60.00796 * 1 2 3 31 31 H 1.08999 * 109.46919 * 270.02821 * 6 5 4 32 32 H 1.09001 * 109.46797 * 30.02206 * 6 5 4 33 33 H 1.08994 * 109.46792 * 150.02285 * 6 5 4 34 34 H 1.08997 * 109.47041 * 29.97123 * 8 7 5 35 35 H 1.08995 * 109.46911 * 149.97377 * 8 7 5 36 36 H 1.09006 * 109.46844 * 300.00201 * 9 8 7 37 37 H 1.08994 * 109.47414 * 59.99519 * 9 8 7 38 38 H 1.09005 * 109.46997 * 89.99583 * 13 12 10 39 39 H 1.08998 * 109.47686 * 209.99632 * 13 12 10 40 40 H 1.09000 * 109.46835 * 329.99916 * 13 12 10 41 41 H 1.08997 * 109.46914 * 299.99499 * 16 14 12 42 42 H 1.09000 * 109.47058 * 59.99908 * 16 14 12 43 43 H 1.08993 * 109.47036 * 180.02562 * 16 14 12 44 44 H 0.97003 * 120.00171 * 179.97438 * 20 19 17 45 45 H 0.96700 * 114.00230 * 90.00118 * 26 25 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8100 0.0000 0.0000 3 6 2.1160 1.7353 0.0000 4 7 3.3678 2.1711 0.0005 5 6 3.6360 3.4679 0.0000 6 6 5.0636 3.9505 0.0012 7 6 2.5919 4.3741 -0.0005 8 6 2.8592 5.8572 -0.0016 9 6 2.9493 6.3603 1.4405 10 6 3.2160 7.8435 1.4393 11 8 3.3238 8.4394 0.3886 12 7 3.3346 8.5077 2.6060 13 6 3.2037 7.7880 3.8753 14 6 3.5944 9.9495 2.6050 15 1 3.6592 10.3063 1.5770 16 6 4.9137 10.2306 3.3270 17 6 2.4719 10.6627 3.3140 18 1 1.6477 10.0984 3.7246 19 6 2.4973 12.0356 3.4383 20 7 3.5012 12.7227 2.9387 21 14 1.1063 12.9196 4.3177 22 1 1.4265 13.0312 5.7635 23 1 0.9403 14.2780 3.7411 24 1 -0.1537 12.1523 4.1475 25 6 1.2863 3.8854 -0.0010 26 8 0.2333 4.7385 -0.0021 27 7 1.0888 2.5727 0.0054 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3633 0.5138 0.8899 30 1 -0.3633 0.5137 -0.8901 31 1 5.4069 4.0669 1.0292 32 1 5.6932 3.2235 -0.5119 33 1 5.1232 4.9098 -0.5128 34 1 3.7996 6.0565 -0.5153 35 1 2.0479 6.3722 -0.5161 36 1 2.0088 6.1609 1.9542 37 1 3.7604 5.8453 1.9550 38 1 4.1827 7.4272 4.1910 39 1 2.8020 8.4595 4.6341 40 1 2.5292 6.9417 3.7452 41 1 4.8485 9.8740 4.3549 42 1 5.7255 9.7147 2.8141 43 1 5.1067 11.3033 3.3266 44 1 3.5188 13.6887 3.0259 45 1 -0.0718 4.9856 -0.8858 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000264092649.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:22:11 Heat of formation + Delta-G solvation = -59.963243 kcal Electronic energy + Delta-G solvation = -27178.994415 eV Core-core repulsion = 23322.237299 eV Total energy + Delta-G solvation = -3856.757116 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -42.37294 -40.70830 -38.75964 -37.25799 -36.26509 -34.82599 -34.30985 -32.10424 -30.91905 -30.13847 -29.16622 -27.57130 -27.30352 -26.67515 -24.04622 -23.73233 -22.32649 -20.17396 -19.83814 -19.30187 -18.53731 -18.28377 -17.91355 -17.16279 -16.82486 -16.55135 -16.15596 -15.85500 -15.42140 -15.19046 -14.88667 -14.62297 -14.50929 -14.35680 -14.22723 -13.83117 -13.69631 -13.58686 -13.56258 -13.40846 -13.29922 -13.00257 -12.91468 -12.80371 -12.70867 -12.61491 -12.19785 -12.13292 -12.04167 -12.00364 -11.48332 -11.40498 -11.17308 -10.83093 -10.60779 -10.48791 -10.42345 -9.30149 -8.82315 -8.14335 -6.30487 -0.46387 -0.18898 0.12939 1.11694 1.40721 1.42265 1.51938 1.84224 2.21093 2.33927 2.44948 2.54490 3.10877 3.13504 3.45539 3.52653 3.71145 3.98851 4.11017 4.18301 4.28744 4.30738 4.35927 4.42663 4.58250 4.69080 4.70182 4.75450 4.79258 4.84211 4.92219 4.94695 5.01737 5.03680 5.05581 5.11017 5.35610 5.49151 5.62079 5.68740 5.71698 6.05575 6.18247 6.41323 6.69091 6.77651 6.86736 7.33383 7.50845 8.89764 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.021149 B = 0.002366 C = 0.002247 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1323.616733 B =11830.152923 C =12459.249853 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 S 0.004 5.996 3 C 0.299 3.701 4 N -0.524 5.524 5 C 0.204 3.796 6 C -0.112 4.112 7 C -0.207 4.207 8 C -0.041 4.041 9 C -0.115 4.115 10 C 0.497 3.503 11 O -0.600 6.600 12 N -0.603 5.603 13 C 0.080 3.920 14 C 0.261 3.739 15 H 0.011 0.989 16 C -0.131 4.131 17 C -0.538 4.538 18 H 0.059 0.941 19 C 0.015 3.985 20 N -0.916 5.916 21 Si 0.963 3.037 22 H -0.268 1.268 23 H -0.285 1.285 24 H -0.272 1.272 25 C 0.376 3.624 26 O -0.477 6.477 27 N -0.559 5.559 28 H 0.135 0.865 29 H 0.084 0.916 30 H 0.088 0.912 31 H 0.104 0.896 32 H 0.093 0.907 33 H 0.095 0.905 34 H 0.091 0.909 35 H 0.075 0.925 36 H 0.098 0.902 37 H 0.112 0.888 38 H 0.067 0.933 39 H 0.066 0.934 40 H 0.084 0.916 41 H 0.044 0.956 42 H 0.022 0.978 43 H 0.066 0.934 44 H 0.264 0.736 45 H 0.426 0.574 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.833 -25.149 -4.397 25.687 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.305 4.305 2 S 0.237 5.763 3 C -0.076 4.076 4 N -0.243 5.243 5 C 0.057 3.943 6 C -0.169 4.169 7 C -0.216 4.216 8 C -0.079 4.079 9 C -0.155 4.155 10 C 0.287 3.713 11 O -0.483 6.483 12 N -0.333 5.333 13 C -0.062 4.062 14 C 0.159 3.841 15 H 0.029 0.971 16 C -0.190 4.190 17 C -0.577 4.577 18 H 0.077 0.923 19 C -0.185 4.185 20 N -0.555 5.555 21 Si 0.788 3.212 22 H -0.194 1.194 23 H -0.211 1.211 24 H -0.196 1.196 25 C 0.186 3.814 26 O -0.287 6.287 27 N -0.289 5.289 28 H 0.153 0.847 29 H 0.103 0.897 30 H 0.107 0.893 31 H 0.122 0.878 32 H 0.112 0.888 33 H 0.114 0.886 34 H 0.109 0.891 35 H 0.094 0.906 36 H 0.116 0.884 37 H 0.130 0.870 38 H 0.086 0.914 39 H 0.085 0.915 40 H 0.103 0.897 41 H 0.063 0.937 42 H 0.041 0.959 43 H 0.085 0.915 44 H 0.073 0.927 45 H 0.290 0.710 Dipole moment (debyes) X Y Z Total from point charges -2.180 -26.597 -4.329 27.035 hybrid contribution -1.579 3.083 -0.091 3.464 sum -3.759 -23.514 -4.420 24.219 Atomic orbital electron populations 1.23639 0.91951 1.08030 1.06917 1.85798 1.09164 0.91356 1.89970 1.25174 0.86297 1.01287 0.94865 1.68433 1.20948 1.17010 1.17948 1.21997 0.98081 0.86948 0.87284 1.21018 0.87737 1.02867 1.05274 1.21488 0.93272 0.98789 1.08043 1.19995 1.04298 0.87657 0.95985 1.21560 1.04844 0.90071 0.98993 1.21230 0.76265 0.90708 0.83131 1.90617 1.53824 1.71231 1.32586 1.48258 1.68564 1.09839 1.06636 1.21822 1.02055 0.96817 0.85544 1.18523 0.93748 0.76137 0.95731 0.97090 1.21859 0.96008 1.02457 0.98681 1.21584 1.06785 0.92332 1.36953 0.92301 1.25714 0.98346 0.98161 0.96229 1.70016 1.32067 1.07375 1.46086 0.85489 0.79326 0.77545 0.78849 1.19361 1.21116 1.19647 1.19379 0.86542 0.85934 0.89532 1.84697 1.47532 1.60544 1.35958 1.68300 1.36009 1.04219 1.20341 0.84703 0.89655 0.89255 0.87816 0.88787 0.88629 0.89102 0.90595 0.88424 0.86964 0.91418 0.91496 0.89740 0.93683 0.95903 0.91522 0.92660 0.71030 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.63 9.62 113.37 1.09 -0.54 16 2 S 0.00 0.07 22.89 -56.49 -1.29 -1.23 16 3 C 0.30 7.06 7.85 180.43 1.42 8.48 16 4 N -0.52 -12.69 10.33 -184.70 -1.91 -14.60 16 5 C 0.20 4.41 6.82 42.48 0.29 4.70 16 6 C -0.11 -1.77 9.83 71.24 0.70 -1.07 16 7 C -0.21 -4.60 5.18 -19.58 -0.10 -4.71 16 8 C -0.04 -0.98 4.08 29.85 0.12 -0.85 16 9 C -0.11 -3.03 4.24 29.85 0.13 -2.90 16 10 C 0.50 19.39 7.67 87.66 0.67 20.06 16 11 O -0.60 -28.69 15.31 -3.02 -0.05 -28.74 16 12 N -0.60 -24.86 2.75 -826.78 -2.28 -27.13 16 13 C 0.08 2.48 9.24 127.77 1.18 3.66 16 14 C 0.26 13.44 2.64 44.25 0.12 13.55 16 15 H 0.01 0.68 6.90 -2.38 -0.02 0.67 16 16 C -0.13 -6.27 8.97 71.98 0.65 -5.63 16 17 C -0.54 -29.15 7.99 25.60 0.20 -28.95 16 18 H 0.06 3.11 7.33 -2.91 -0.02 3.09 16 19 C 0.02 0.82 5.30 84.66 0.45 1.27 16 20 N -0.92 -52.64 11.32 21.45 0.24 -52.40 16 21 Si 0.96 43.00 29.54 68.60 2.03 45.03 16 22 H -0.27 -11.42 7.11 99.48 0.71 -10.71 16 23 H -0.29 -12.67 7.11 99.48 0.71 -11.97 16 24 H -0.27 -11.92 7.11 99.48 0.71 -11.21 16 25 C 0.38 8.69 7.80 84.84 0.66 9.35 16 26 O -0.48 -9.80 12.74 -88.14 -1.12 -10.93 16 27 N -0.56 -13.32 9.16 -309.33 -2.83 -16.15 16 28 H 0.13 0.82 8.14 -2.39 -0.02 0.80 16 29 H 0.08 1.18 8.11 -2.40 -0.02 1.16 16 30 H 0.09 1.13 8.11 -2.40 -0.02 1.11 16 31 H 0.10 1.41 8.14 -2.39 -0.02 1.39 16 32 H 0.09 1.33 8.14 -2.39 -0.02 1.31 16 33 H 0.10 1.44 6.06 -2.39 -0.01 1.43 16 34 H 0.09 2.15 6.02 -2.39 -0.01 2.14 16 35 H 0.08 1.98 7.58 -2.39 -0.02 1.96 16 36 H 0.10 2.48 7.40 -2.38 -0.02 2.46 16 37 H 0.11 2.37 8.11 -2.39 -0.02 2.35 16 38 H 0.07 1.77 8.14 -2.38 -0.02 1.75 16 39 H 0.07 2.27 7.02 -2.39 -0.02 2.25 16 40 H 0.08 2.07 6.44 -2.39 -0.02 2.06 16 41 H 0.04 1.95 7.67 -2.39 -0.02 1.93 16 42 H 0.02 0.98 8.14 -2.39 -0.02 0.96 16 43 H 0.07 3.55 6.07 -2.39 -0.01 3.53 16 44 H 0.26 14.38 8.31 -92.71 -0.77 13.61 16 45 H 0.43 4.81 9.06 -74.06 -0.67 4.14 16 Total: -1.00 -74.22 383.50 0.72 -73.50 By element: Atomic # 1 Polarization: 15.86 SS G_CDS: 0.36 Total: 16.21 kcal Atomic # 6 Polarization: 8.85 SS G_CDS: 7.57 Total: 16.43 kcal Atomic # 7 Polarization: -103.51 SS G_CDS: -6.78 Total: -110.28 kcal Atomic # 8 Polarization: -38.49 SS G_CDS: -1.17 Total: -39.66 kcal Atomic # 14 Polarization: 43.00 SS G_CDS: 2.03 Total: 45.03 kcal Atomic # 16 Polarization: 0.07 SS G_CDS: -1.29 Total: -1.23 kcal Total: -74.22 0.72 -73.50 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000264092649.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.539 kcal (2) G-P(sol) polarization free energy of solvation -74.222 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.683 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.720 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.502 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.963 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds