Wall clock time and date at job start Tue Mar 31 2020 23:22:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81000 * 1 3 3 C 1.76207 * 99.99790 * 2 1 4 4 N 1.32557 * 119.18876 * 180.02562 * 3 2 1 5 5 C 1.32413 * 120.87564 * 180.02562 * 4 3 2 6 6 C 1.50705 * 120.35918 * 179.97438 * 5 4 3 7 7 C 1.38257 * 119.27929 * 359.97438 * 5 4 3 8 8 C 1.50698 * 120.74446 * 180.02562 * 7 5 4 9 9 C 1.52992 * 109.47316 * 89.99878 * 8 7 5 10 10 C 1.50699 * 109.47132 * 180.02562 * 9 8 7 11 11 O 1.21281 * 119.99822 * 359.97438 * 10 9 8 12 12 N 1.34777 * 120.00362 * 180.02562 * 10 9 8 13 13 C 1.46503 * 119.99812 * 359.97438 * 12 10 9 14 14 C 1.46497 * 120.00371 * 179.97438 * 12 10 9 15 15 H 1.09003 * 109.46733 * 0.02562 * 14 12 10 16 16 C 1.53000 * 109.47145 * 119.99612 * 14 12 10 17 17 C 1.50694 * 109.47115 * 239.99685 * 14 12 10 18 18 H 1.08000 * 120.00563 * 359.97438 * 17 14 12 19 19 C 1.37885 * 119.99902 * 180.02562 * 17 14 12 20 20 N 1.31516 * 119.99913 * 359.97438 * 19 17 14 21 21 Si 1.86798 * 119.99766 * 179.97438 * 19 17 14 22 22 H 1.48506 * 109.46985 * 179.97438 * 21 19 17 23 23 H 1.48494 * 109.47276 * 299.99832 * 21 19 17 24 24 H 1.48498 * 109.47150 * 60.00043 * 21 19 17 25 25 C 1.39416 * 118.51269 * 0.27274 * 7 5 4 26 26 O 1.35512 * 120.45884 * 179.70791 * 25 7 5 27 27 N 1.32519 * 119.19515 * 359.97438 * 3 2 1 28 28 H 1.08997 * 109.46911 * 299.99869 * 1 2 3 29 29 H 1.09005 * 109.47195 * 59.99941 * 1 2 3 30 30 H 1.08999 * 109.47083 * 180.02562 * 1 2 3 31 31 H 1.08996 * 109.47058 * 270.01598 * 6 5 4 32 32 H 1.09000 * 109.47285 * 30.02145 * 6 5 4 33 33 H 1.09007 * 109.46687 * 150.02149 * 6 5 4 34 34 H 1.08998 * 109.46604 * 329.99460 * 8 7 5 35 35 H 1.08996 * 109.46745 * 210.00081 * 8 7 5 36 36 H 1.09000 * 109.47369 * 59.99730 * 9 8 7 37 37 H 1.09000 * 109.47078 * 299.99420 * 9 8 7 38 38 H 1.08994 * 109.47665 * 270.01072 * 13 12 10 39 39 H 1.09008 * 109.46786 * 30.00680 * 13 12 10 40 40 H 1.08997 * 109.47360 * 150.00121 * 13 12 10 41 41 H 1.08997 * 109.47359 * 180.02562 * 16 14 12 42 42 H 1.09007 * 109.47356 * 300.00099 * 16 14 12 43 43 H 1.09000 * 109.47156 * 59.99824 * 16 14 12 44 44 H 0.97001 * 119.99646 * 179.97438 * 20 19 17 45 45 H 0.96697 * 114.00262 * 90.00273 * 26 25 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8100 0.0000 0.0000 3 6 2.1159 1.7353 0.0000 4 7 3.3678 2.1710 -0.0005 5 6 3.6360 3.4677 0.0000 6 6 5.0637 3.9503 0.0000 7 6 2.5920 4.3741 0.0005 8 6 2.8594 5.8572 0.0005 9 6 2.9492 6.3592 -1.4419 10 6 3.2172 7.8422 -1.4419 11 8 3.3252 8.4389 -0.3915 12 7 3.3359 8.5057 -2.6090 13 6 3.2049 7.7850 -3.8778 14 6 3.5959 9.9474 -2.6090 15 1 3.6616 10.3046 -1.5813 16 6 4.9153 10.2277 -3.3311 17 6 2.4736 10.6602 -3.3184 18 1 1.6493 10.0958 -3.7288 19 6 2.4996 12.0330 -3.4447 20 7 3.5036 12.7203 -2.9455 21 14 1.1088 12.9164 -4.3247 22 1 1.3723 14.3779 -4.3246 23 1 1.0202 12.4291 -5.7246 24 1 -0.1719 12.6448 -3.6240 25 6 1.2863 3.8854 0.0063 26 8 0.2335 4.7385 0.0130 27 7 1.0889 2.5727 -0.0005 28 1 -0.3633 0.5138 0.8900 29 1 -0.3634 0.5139 -0.8900 30 1 -0.3633 -1.0277 0.0005 31 1 5.4081 4.0659 1.0276 32 1 5.6928 3.2239 -0.5146 33 1 5.1227 4.9102 -0.5132 34 1 3.7999 6.0567 0.5140 35 1 2.0482 6.3725 0.5147 36 1 2.0087 6.1596 -1.9554 37 1 3.7605 5.8439 -1.9561 38 1 4.1837 7.4237 -4.1933 39 1 2.5302 6.9389 -3.7471 40 1 2.8032 8.4560 -4.6370 41 1 5.1090 11.3003 -3.3307 42 1 5.7271 9.7121 -2.8180 43 1 4.8501 9.8703 -4.3588 44 1 3.5221 13.6860 -3.0346 45 1 -0.0766 4.9875 -0.8684 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000264092651.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:22:16 Heat of formation + Delta-G solvation = -37.043237 kcal Electronic energy + Delta-G solvation = -27194.934840 eV Core-core repulsion = 23339.171610 eV Total energy + Delta-G solvation = -3855.763230 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.49845 -39.19071 -37.91820 -35.74751 -35.11751 -33.44344 -32.86557 -30.86011 -29.58028 -29.34428 -28.36164 -26.21286 -25.59528 -25.22645 -23.15545 -22.59947 -20.74566 -19.35158 -18.43410 -18.32101 -17.46340 -16.78808 -16.32322 -16.00965 -15.35914 -15.28831 -15.02580 -14.60754 -14.39597 -14.07437 -13.91030 -13.89033 -13.43750 -13.07913 -13.00644 -12.91318 -12.65257 -12.55058 -12.29402 -12.28146 -12.02409 -11.63599 -11.52736 -11.28873 -11.14133 -11.05166 -10.87244 -10.74137 -10.62640 -10.56236 -10.30324 -10.20551 -9.91088 -9.59231 -9.24022 -8.98793 -8.46204 -8.05237 -7.64776 -6.11090 -4.19434 0.42556 0.67157 0.89505 1.76397 3.05168 3.24290 3.28644 3.30291 3.32256 3.34314 3.86547 3.91074 4.32013 4.35533 4.58611 4.64201 4.79948 4.86444 4.96760 5.05274 5.18364 5.20526 5.28706 5.32711 5.42036 5.47677 5.51939 5.62793 5.74190 5.88768 5.94728 6.02960 6.24236 6.30263 6.58372 6.71368 6.79121 7.02428 7.09497 7.36892 7.49202 7.56055 7.67457 7.97228 8.15920 8.47920 8.78356 8.99769 9.47089 10.94146 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.021209 B = 0.002368 C = 0.002247 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1319.848287 B =11820.341183 C =12457.319142 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 S 0.002 5.998 3 C 0.313 3.687 4 N -0.506 5.506 5 C 0.205 3.795 6 C -0.112 4.112 7 C -0.201 4.201 8 C -0.055 4.055 9 C -0.133 4.133 10 C 0.503 3.497 11 O -0.551 6.551 12 N -0.593 5.593 13 C 0.083 3.917 14 C 0.257 3.743 15 H 0.063 0.937 16 C -0.146 4.146 17 C -0.527 4.527 18 H 0.058 0.942 19 C 0.065 3.935 20 N -0.887 5.887 21 Si 0.899 3.101 22 H -0.286 1.286 23 H -0.277 1.277 24 H -0.277 1.277 25 C 0.378 3.622 26 O -0.468 6.468 27 N -0.549 5.549 28 H 0.090 0.910 29 H 0.090 0.910 30 H 0.106 0.894 31 H 0.091 0.909 32 H 0.086 0.914 33 H 0.089 0.911 34 H 0.089 0.911 35 H 0.093 0.907 36 H 0.083 0.917 37 H 0.086 0.914 38 H 0.043 0.957 39 H 0.051 0.949 40 H 0.081 0.919 41 H 0.093 0.907 42 H 0.011 0.989 43 H 0.029 0.971 44 H 0.264 0.736 45 H 0.409 0.591 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.119 -23.094 2.106 23.287 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.313 4.313 2 S 0.236 5.764 3 C -0.063 4.063 4 N -0.225 5.225 5 C 0.057 3.943 6 C -0.169 4.169 7 C -0.210 4.210 8 C -0.094 4.094 9 C -0.173 4.173 10 C 0.289 3.711 11 O -0.430 6.430 12 N -0.324 5.324 13 C -0.061 4.061 14 C 0.157 3.843 15 H 0.081 0.919 16 C -0.204 4.204 17 C -0.566 4.566 18 H 0.076 0.924 19 C -0.138 4.138 20 N -0.525 5.525 21 Si 0.726 3.274 22 H -0.211 1.211 23 H -0.203 1.203 24 H -0.202 1.202 25 C 0.189 3.811 26 O -0.276 6.276 27 N -0.278 5.278 28 H 0.109 0.891 29 H 0.109 0.891 30 H 0.124 0.876 31 H 0.109 0.891 32 H 0.105 0.895 33 H 0.108 0.892 34 H 0.108 0.892 35 H 0.111 0.889 36 H 0.101 0.899 37 H 0.105 0.895 38 H 0.061 0.939 39 H 0.070 0.930 40 H 0.099 0.901 41 H 0.111 0.889 42 H 0.030 0.970 43 H 0.048 0.952 44 H 0.074 0.926 45 H 0.269 0.731 Dipole moment (debyes) X Y Z Total from point charges -1.445 -24.502 3.241 24.757 hybrid contribution -1.765 2.535 -1.153 3.297 sum -3.209 -21.967 2.088 22.298 Atomic orbital electron populations 1.23566 0.94076 1.06305 1.07361 1.85817 1.06849 0.93120 1.90659 1.24633 0.86243 1.00032 0.95401 1.68346 1.20708 1.16532 1.16917 1.21625 0.97044 0.87223 0.88374 1.20907 0.89135 1.02529 1.04333 1.21657 0.93148 0.99534 1.06637 1.20186 1.05134 0.87325 0.96739 1.21651 1.03243 0.94829 0.97585 1.20273 0.77911 0.88538 0.84333 1.90665 1.51738 1.69555 1.31055 1.48258 1.68467 1.11255 1.04415 1.21597 0.99860 0.96551 0.88053 1.18937 0.93254 0.73203 0.98872 0.91877 1.22082 0.96385 1.04106 0.97874 1.21263 1.06332 0.91818 1.37197 0.92363 1.24896 0.96053 0.97326 0.95486 1.69867 1.30362 1.07289 1.44960 0.86557 0.82354 0.78547 0.79927 1.21138 1.20258 1.20245 1.19222 0.86182 0.85731 0.89997 1.84711 1.47760 1.60756 1.34365 1.68235 1.35955 1.04111 1.19498 0.89065 0.89078 0.87573 0.89063 0.89529 0.89204 0.89225 0.88869 0.89859 0.89529 0.93865 0.93018 0.90064 0.88851 0.97040 0.95209 0.92585 0.73099 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.00 9.62 101.05 0.97 -0.03 16 2 S 0.00 0.02 22.89 -107.50 -2.46 -2.44 16 3 C 0.31 3.90 7.85 -90.87 -0.71 3.18 16 4 N -0.51 -6.48 10.33 -9.73 -0.10 -6.58 16 5 C 0.21 2.39 6.82 -82.33 -0.56 1.83 16 6 C -0.11 -1.00 9.44 36.01 0.34 -0.66 16 7 C -0.20 -2.39 5.18 -104.18 -0.54 -2.93 16 8 C -0.05 -0.69 3.78 -27.89 -0.11 -0.80 16 9 C -0.13 -1.72 4.12 -27.89 -0.11 -1.83 16 10 C 0.50 9.53 7.67 -10.99 -0.08 9.44 16 11 O -0.55 -12.72 15.31 5.56 0.09 -12.64 16 12 N -0.59 -11.91 2.75 -175.26 -0.48 -12.39 16 13 C 0.08 1.30 9.24 59.85 0.55 1.85 16 14 C 0.26 6.38 2.64 -69.09 -0.18 6.19 16 15 H 0.06 1.83 6.90 -51.93 -0.36 1.47 16 16 C -0.15 -3.40 8.97 37.16 0.33 -3.07 16 17 C -0.53 -13.87 7.99 -34.44 -0.28 -14.14 16 18 H 0.06 1.50 7.33 -52.49 -0.38 1.11 16 19 C 0.07 1.74 5.30 -17.82 -0.09 1.65 16 20 N -0.89 -24.70 11.32 55.43 0.63 -24.07 16 21 Si 0.90 20.64 29.54 -169.99 -5.02 15.62 16 22 H -0.29 -6.55 7.11 56.52 0.40 -6.15 16 23 H -0.28 -6.20 7.11 56.52 0.40 -5.80 16 24 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 25 C 0.38 4.64 7.80 -16.72 -0.13 4.51 16 26 O -0.47 -5.16 12.74 -18.23 -0.23 -5.39 16 27 N -0.55 -6.89 9.16 -13.50 -0.12 -7.02 16 28 H 0.09 0.70 8.11 -51.92 -0.42 0.28 16 29 H 0.09 0.66 8.11 -51.91 -0.42 0.24 16 30 H 0.11 0.47 8.14 -51.92 -0.42 0.05 16 31 H 0.09 0.73 8.14 -51.93 -0.42 0.31 16 32 H 0.09 0.70 8.14 -51.93 -0.42 0.28 16 33 H 0.09 0.78 6.03 -51.92 -0.31 0.46 16 34 H 0.09 1.14 6.76 -51.93 -0.35 0.79 16 35 H 0.09 1.33 7.57 -51.93 -0.39 0.94 16 36 H 0.08 0.93 7.40 -51.93 -0.38 0.54 16 37 H 0.09 0.96 7.43 -51.93 -0.39 0.57 16 38 H 0.04 0.60 8.14 -51.93 -0.42 0.18 16 39 H 0.05 0.63 6.44 -51.92 -0.33 0.30 16 40 H 0.08 1.37 7.02 -51.93 -0.36 1.01 16 41 H 0.09 2.40 6.07 -51.93 -0.32 2.09 16 42 H 0.01 0.23 8.14 -51.93 -0.42 -0.19 16 43 H 0.03 0.64 7.67 -51.93 -0.40 0.24 16 44 H 0.26 7.02 8.31 -40.82 -0.34 6.68 16 45 H 0.41 2.68 9.06 45.56 0.41 3.10 16 LS Contribution 382.71 15.07 5.77 5.77 Total: -1.00 -33.22 382.71 -8.21 -41.43 By element: Atomic # 1 Polarization: 8.17 SS G_CDS: -5.66 Total: 2.51 kcal Atomic # 6 Polarization: 5.80 SS G_CDS: -0.60 Total: 5.19 kcal Atomic # 7 Polarization: -49.98 SS G_CDS: -0.08 Total: -50.06 kcal Atomic # 8 Polarization: -17.88 SS G_CDS: -0.15 Total: -18.02 kcal Atomic # 14 Polarization: 20.64 SS G_CDS: -5.02 Total: 15.62 kcal Atomic # 16 Polarization: 0.02 SS G_CDS: -2.46 Total: -2.44 kcal Total LS contribution 5.77 Total: 5.77 kcal Total: -33.22 -8.21 -41.43 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000264092651.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.384 kcal (2) G-P(sol) polarization free energy of solvation -33.222 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.838 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.205 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.428 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.043 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds