Wall clock time and date at job start Tue Mar 31 2020 22:30:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86800 * 119.99898 * 2 1 4 4 H 1.48505 * 109.46786 * 180.02562 * 3 2 1 5 5 H 1.48495 * 109.46910 * 299.99768 * 3 2 1 6 6 H 1.48497 * 109.47337 * 59.99936 * 3 2 1 7 7 C 1.37874 * 119.99850 * 179.97438 * 2 1 3 8 8 H 1.07997 * 119.99869 * 180.02562 * 7 2 1 9 9 C 1.50698 * 119.99970 * 0.02562 * 7 2 1 10 10 C 1.53002 * 109.46995 * 179.97438 * 9 7 2 11 11 C 1.53003 * 109.47199 * 179.97438 * 10 9 7 12 12 N 1.46503 * 109.47019 * 179.97438 * 11 10 9 13 13 C 1.39005 * 119.99777 * 180.02562 * 12 11 10 14 14 C 1.39136 * 119.70582 * 359.97438 * 13 12 11 15 15 C 1.38300 * 119.09630 * 180.02562 * 14 13 12 16 16 C 1.38875 * 118.50617 * 0.02562 * 15 14 13 17 17 S 1.76201 * 120.33605 * 179.97438 * 16 15 14 18 18 O 1.42102 * 106.40076 * 23.56347 * 17 16 15 19 19 O 1.42106 * 106.40164 * 156.48339 * 17 16 15 20 20 N 1.65597 * 107.21746 * 270.02341 * 17 16 15 21 21 C 1.47024 * 125.64507 * 269.68936 * 20 17 16 22 22 C 1.54317 * 107.27331 * 180.96791 * 21 20 17 23 23 C 1.55155 * 102.86420 * 22.52893 * 22 21 20 24 24 C 1.47418 * 125.64893 * 90.00135 * 20 17 16 25 25 C 1.38025 * 119.32870 * 0.02562 * 16 15 14 26 26 N 1.31964 * 120.85841 * 0.02562 * 25 16 15 27 27 H 0.97004 * 119.99728 * 359.97438 * 1 2 3 28 28 H 1.08995 * 109.47663 * 59.99654 * 9 7 2 29 29 H 1.08999 * 109.46977 * 299.99393 * 9 7 2 30 30 H 1.09004 * 109.47290 * 60.00008 * 10 9 7 31 31 H 1.08999 * 109.46994 * 299.99667 * 10 9 7 32 32 H 1.08996 * 109.46883 * 59.99702 * 11 10 9 33 33 H 1.08999 * 109.47135 * 299.99899 * 11 10 9 34 34 H 0.96998 * 120.00370 * 0.02562 * 12 11 10 35 35 H 1.08004 * 120.45453 * 0.05035 * 14 13 12 36 36 H 1.08001 * 120.74469 * 180.02562 * 15 14 13 37 37 H 1.09004 * 109.88533 * 300.51398 * 21 20 17 38 38 H 1.08997 * 109.88498 * 61.68148 * 21 20 17 39 39 H 1.08992 * 110.92856 * 264.11368 * 22 21 20 40 40 H 1.09002 * 110.59199 * 140.78456 * 22 21 20 41 41 H 1.09003 * 111.00980 * 206.22736 * 23 22 21 42 42 H 1.09001 * 111.04233 * 82.39033 * 23 22 21 43 43 H 1.09002 * 110.36690 * 274.66737 * 24 20 17 44 44 H 1.09005 * 110.36909 * 36.88709 * 24 20 17 45 45 H 1.08006 * 119.57087 * 179.72418 * 25 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3463 -0.0006 5 1 1.8904 2.3964 -1.2125 6 1 1.8904 2.3965 1.2125 7 6 2.0045 -1.1940 0.0005 8 1 3.0844 -1.1940 0.0010 9 6 1.2510 -2.4991 0.0005 10 6 2.2452 -3.6620 0.0005 11 6 1.4802 -4.9871 0.0012 12 7 2.4322 -6.1006 0.0006 13 6 1.9689 -7.4112 0.0004 14 6 0.5996 -7.6583 0.0015 15 6 0.1525 -8.9671 0.0019 16 6 1.0931 -9.9888 0.0018 17 16 0.5770 -11.6735 0.0030 18 8 -0.7356 -11.6914 -0.5411 19 8 1.6543 -12.4236 -0.5412 20 7 0.4338 -12.1412 1.5851 21 6 1.5002 -12.7391 2.4017 22 6 0.9023 -13.0305 3.7942 23 6 -0.6202 -13.1106 3.5065 24 6 -0.7859 -12.0330 2.4060 25 6 2.4363 -9.6712 0.0019 26 7 2.8343 -8.4131 0.0025 27 1 -0.4850 0.8401 0.0004 28 1 0.6246 -2.5571 -0.8896 29 1 0.6240 -2.5566 0.8903 30 1 2.8719 -3.6043 0.8905 31 1 2.8718 -3.6043 -0.8895 32 1 0.8532 -5.0450 -0.8885 33 1 0.8538 -5.0446 0.8914 34 1 3.3859 -5.9234 0.0002 35 1 -0.1045 -6.8394 0.0015 36 1 -0.9044 -9.1894 0.0022 37 1 1.8436 -13.6660 1.9422 38 1 2.3310 -12.0398 2.4962 39 1 1.1213 -12.2200 4.4893 40 1 1.2725 -13.9807 4.1791 41 1 -1.1996 -12.8553 4.3938 42 1 -0.8965 -14.0965 3.1326 43 1 -0.8553 -11.0415 2.8535 44 1 -1.6695 -12.2383 1.8016 45 1 3.1711 -10.4628 0.0063 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000264239448.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:30:37 Heat of formation + Delta-G solvation = -46.489489 kcal Electronic energy + Delta-G solvation = -26317.763762 eV Core-core repulsion = 22461.590912 eV Total energy + Delta-G solvation = -3856.172850 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -40.36508 -38.69992 -37.43138 -36.63732 -36.02924 -33.83512 -32.72085 -31.74237 -31.32151 -29.70294 -29.39771 -26.71196 -24.29153 -23.48661 -22.97133 -22.26698 -21.63571 -20.55739 -19.33620 -18.32145 -17.83051 -17.45755 -16.98785 -16.49627 -16.32116 -15.42665 -15.28481 -14.79342 -14.51950 -14.34878 -14.32914 -14.13581 -13.99937 -13.74876 -13.48084 -13.21352 -13.04406 -12.42318 -12.33345 -12.27070 -12.22146 -11.96213 -11.95027 -11.73998 -11.58803 -11.35622 -11.14933 -11.06340 -10.87264 -10.68850 -10.64210 -10.08530 -9.84748 -9.75057 -9.62257 -9.34557 -9.24252 -8.47820 -8.06222 -6.12457 -4.15633 0.14810 0.78627 1.15454 2.73258 3.02937 3.23650 3.31695 3.35340 3.48413 3.67584 3.86886 4.13443 4.36141 4.36486 4.38223 4.51809 4.63365 4.86503 4.89084 5.00748 5.06426 5.11677 5.23955 5.32130 5.36010 5.41633 5.44183 5.46159 5.51244 5.53994 5.65139 5.69029 5.72279 5.81276 5.85345 6.04302 6.19155 6.36858 6.48336 6.78312 6.88149 7.39929 7.49114 7.59684 7.85175 7.91001 8.26227 8.90761 9.49456 10.98812 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.023177 B = 0.001860 C = 0.001830 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1207.793110 B =15050.458821 C =15298.048965 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.057 3.943 3 Si 0.894 3.106 4 H -0.273 1.273 5 H -0.283 1.283 6 H -0.283 1.283 7 C -0.524 4.524 8 H 0.056 0.944 9 C 0.025 3.975 10 C -0.121 4.121 11 C 0.115 3.885 12 N -0.702 5.702 13 C 0.449 3.551 14 C -0.256 4.256 15 C 0.060 3.940 16 C -0.806 4.806 17 S 2.723 3.277 18 O -0.958 6.958 19 O -0.958 6.958 20 N -1.014 6.014 21 C 0.118 3.882 22 C -0.129 4.129 23 C -0.130 4.130 24 C 0.113 3.887 25 C 0.255 3.745 26 N -0.559 5.559 27 H 0.261 0.739 28 H 0.019 0.981 29 H 0.019 0.981 30 H 0.057 0.943 31 H 0.057 0.943 32 H 0.067 0.933 33 H 0.067 0.933 34 H 0.408 0.592 35 H 0.144 0.856 36 H 0.146 0.854 37 H 0.074 0.926 38 H 0.067 0.933 39 H 0.077 0.923 40 H 0.081 0.919 41 H 0.083 0.917 42 H 0.077 0.923 43 H 0.068 0.932 44 H 0.084 0.916 45 H 0.167 0.833 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.412 -27.887 7.235 28.814 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.533 5.533 2 C -0.145 4.145 3 Si 0.722 3.278 4 H -0.197 1.197 5 H -0.209 1.209 6 H -0.209 1.209 7 C -0.562 4.562 8 H 0.075 0.925 9 C -0.013 4.013 10 C -0.159 4.159 11 C -0.008 4.008 12 N -0.328 5.328 13 C 0.210 3.790 14 C -0.281 4.281 15 C 0.034 3.966 16 C -0.900 4.900 17 S 2.815 3.185 18 O -0.948 6.948 19 O -0.949 6.949 20 N -0.853 5.853 21 C -0.007 4.007 22 C -0.168 4.168 23 C -0.169 4.169 24 C -0.012 4.012 25 C 0.091 3.909 26 N -0.277 5.277 27 H 0.071 0.929 28 H 0.038 0.962 29 H 0.038 0.962 30 H 0.076 0.924 31 H 0.076 0.924 32 H 0.086 0.914 33 H 0.085 0.915 34 H 0.244 0.756 35 H 0.162 0.838 36 H 0.164 0.836 37 H 0.092 0.908 38 H 0.085 0.915 39 H 0.095 0.905 40 H 0.100 0.900 41 H 0.102 0.898 42 H 0.095 0.905 43 H 0.086 0.914 44 H 0.103 0.897 45 H 0.184 0.816 Dipole moment (debyes) X Y Z Total from point charges 0.023 -27.771 6.414 28.502 hybrid contribution 0.155 1.720 0.285 1.751 sum 0.178 -26.051 6.699 26.899 Atomic orbital electron populations 1.69963 1.06068 1.26728 1.50497 1.25028 0.94892 0.99411 0.95126 0.86504 0.80069 0.83577 0.77669 1.19726 1.20932 1.20931 1.21211 0.93092 0.90824 1.51072 0.92532 1.19033 0.93753 0.90846 0.97638 1.21900 0.99929 0.92698 1.01401 1.21914 0.92015 0.85208 1.01645 1.45258 1.10745 1.01575 1.75191 1.18787 0.89267 0.86089 0.84827 1.21545 0.94997 0.98327 1.13277 1.20935 0.99058 0.91128 0.85518 1.31290 1.03245 1.24945 1.30518 1.00932 0.73325 0.73298 0.70949 1.93560 1.38565 1.87250 1.75461 1.93562 1.56240 1.69518 1.75533 1.58705 1.19476 1.76711 1.30409 1.21743 0.89506 0.98230 0.91232 1.22637 0.95521 1.02702 0.95977 1.22767 0.96337 0.99332 0.98432 1.22087 0.86868 0.99534 0.92692 1.22109 0.92097 0.92789 0.83916 1.67333 1.37949 0.99656 1.22783 0.92897 0.96216 0.96235 0.92413 0.92380 0.91447 0.91477 0.75572 0.83824 0.83648 0.90798 0.91509 0.90472 0.90038 0.89843 0.90474 0.91373 0.89717 0.81589 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.94 13.29 55.43 0.74 -25.20 16 2 C 0.06 1.58 5.46 -17.82 -0.10 1.48 16 3 Si 0.89 21.04 29.54 -169.99 -5.02 16.02 16 4 H -0.27 -6.29 7.11 56.52 0.40 -5.88 16 5 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 6 H -0.28 -6.61 7.11 56.52 0.40 -6.20 16 7 C -0.52 -14.16 9.11 -34.44 -0.31 -14.47 16 8 H 0.06 1.49 7.74 -52.49 -0.41 1.08 16 9 C 0.02 0.59 4.97 -27.88 -0.14 0.46 16 10 C -0.12 -2.21 5.27 -26.73 -0.14 -2.35 16 11 C 0.12 1.72 4.89 -4.04 -0.02 1.70 16 12 N -0.70 -9.75 5.73 -60.42 -0.35 -10.09 16 13 C 0.45 6.34 7.65 -155.02 -1.19 5.15 16 14 C -0.26 -3.27 9.33 -39.23 -0.37 -3.64 16 15 C 0.06 0.69 9.64 -39.32 -0.38 0.32 16 16 C -0.81 -9.31 5.99 -39.42 -0.24 -9.54 16 17 S 2.72 29.56 5.95 -107.50 -0.64 28.92 16 18 O -0.96 -12.54 16.68 -57.17 -0.95 -13.50 16 19 O -0.96 -12.36 16.88 -57.17 -0.96 -13.32 16 20 N -1.01 -8.28 3.70 -111.42 -0.41 -8.69 16 21 C 0.12 0.76 6.98 -3.07 -0.02 0.74 16 22 C -0.13 -0.58 6.95 -24.90 -0.17 -0.75 16 23 C -0.13 -0.59 7.08 -24.58 -0.17 -0.77 16 24 C 0.11 0.73 7.11 -2.53 -0.02 0.72 16 25 C 0.26 3.11 10.67 -17.57 -0.19 2.93 16 26 N -0.56 -7.87 10.39 -12.44 -0.13 -8.00 16 27 H 0.26 7.15 8.31 -40.82 -0.34 6.81 16 28 H 0.02 0.49 8.14 -51.93 -0.42 0.07 16 29 H 0.02 0.49 8.14 -51.93 -0.42 0.06 16 30 H 0.06 1.04 8.14 -51.93 -0.42 0.61 16 31 H 0.06 1.05 8.14 -51.93 -0.42 0.63 16 32 H 0.07 1.00 7.93 -51.93 -0.41 0.59 16 33 H 0.07 0.98 7.93 -51.93 -0.41 0.57 16 34 H 0.41 5.37 8.60 -40.82 -0.35 5.02 16 35 H 0.14 1.68 6.71 -52.48 -0.35 1.32 16 36 H 0.15 1.37 7.70 -52.49 -0.40 0.97 16 37 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 38 H 0.07 0.39 8.14 -51.93 -0.42 -0.04 16 39 H 0.08 0.32 8.14 -51.93 -0.42 -0.10 16 40 H 0.08 0.26 8.14 -51.93 -0.42 -0.16 16 41 H 0.08 0.27 8.14 -51.93 -0.42 -0.15 16 42 H 0.08 0.34 8.14 -51.93 -0.42 -0.09 16 43 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 44 H 0.08 0.55 7.78 -51.93 -0.40 0.15 16 45 H 0.17 1.63 7.62 -52.48 -0.40 1.23 16 LS Contribution 384.44 15.07 5.79 5.79 Total: -1.00 -33.50 384.44 -12.31 -45.82 By element: Atomic # 1 Polarization: 7.20 SS G_CDS: -6.93 Total: 0.27 kcal Atomic # 6 Polarization: -14.57 SS G_CDS: -3.45 Total: -18.02 kcal Atomic # 7 Polarization: -51.83 SS G_CDS: -0.15 Total: -51.98 kcal Atomic # 8 Polarization: -24.90 SS G_CDS: -1.92 Total: -26.82 kcal Atomic # 14 Polarization: 21.04 SS G_CDS: -5.02 Total: 16.02 kcal Atomic # 16 Polarization: 29.56 SS G_CDS: -0.64 Total: 28.92 kcal Total LS contribution 5.79 Total: 5.79 kcal Total: -33.50 -12.31 -45.82 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000264239448.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.672 kcal (2) G-P(sol) polarization free energy of solvation -33.503 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.176 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.314 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.817 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.489 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds