Wall clock time and date at job start Tue Mar 31 2020 22:30:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86800 * 119.99898 * 2 1 4 4 H 1.48505 * 109.46786 * 180.02562 * 3 2 1 5 5 H 1.48495 * 109.46910 * 299.99768 * 3 2 1 6 6 H 1.48497 * 109.47337 * 59.99936 * 3 2 1 7 7 C 1.37874 * 119.99850 * 179.97438 * 2 1 3 8 8 H 1.07997 * 119.99869 * 180.02562 * 7 2 1 9 9 C 1.50698 * 119.99970 * 0.02562 * 7 2 1 10 10 C 1.53002 * 109.46995 * 179.97438 * 9 7 2 11 11 C 1.53003 * 109.47199 * 179.97438 * 10 9 7 12 12 N 1.46503 * 109.47019 * 179.97438 * 11 10 9 13 13 C 1.39005 * 119.99777 * 180.02562 * 12 11 10 14 14 C 1.39136 * 119.70582 * 359.97438 * 13 12 11 15 15 C 1.38300 * 119.09630 * 180.02562 * 14 13 12 16 16 C 1.38875 * 118.50617 * 0.02562 * 15 14 13 17 17 S 1.76201 * 120.33605 * 179.97438 * 16 15 14 18 18 O 1.42102 * 106.40076 * 23.56347 * 17 16 15 19 19 O 1.42106 * 106.40164 * 156.48339 * 17 16 15 20 20 N 1.65597 * 107.21746 * 270.02341 * 17 16 15 21 21 C 1.47024 * 125.64507 * 269.68936 * 20 17 16 22 22 C 1.54317 * 107.27331 * 180.96791 * 21 20 17 23 23 C 1.55155 * 102.86420 * 22.52893 * 22 21 20 24 24 C 1.47418 * 125.64893 * 90.00135 * 20 17 16 25 25 C 1.38025 * 119.32870 * 0.02562 * 16 15 14 26 26 N 1.31964 * 120.85841 * 0.02562 * 25 16 15 27 27 H 0.97004 * 119.99728 * 359.97438 * 1 2 3 28 28 H 1.08995 * 109.47663 * 59.99654 * 9 7 2 29 29 H 1.08999 * 109.46977 * 299.99393 * 9 7 2 30 30 H 1.09004 * 109.47290 * 60.00008 * 10 9 7 31 31 H 1.08999 * 109.46994 * 299.99667 * 10 9 7 32 32 H 1.08996 * 109.46883 * 59.99702 * 11 10 9 33 33 H 1.08999 * 109.47135 * 299.99899 * 11 10 9 34 34 H 0.96998 * 120.00370 * 0.02562 * 12 11 10 35 35 H 1.08004 * 120.45453 * 0.05035 * 14 13 12 36 36 H 1.08001 * 120.74469 * 180.02562 * 15 14 13 37 37 H 1.09004 * 109.88533 * 300.51398 * 21 20 17 38 38 H 1.08997 * 109.88498 * 61.68148 * 21 20 17 39 39 H 1.08992 * 110.92856 * 264.11368 * 22 21 20 40 40 H 1.09002 * 110.59199 * 140.78456 * 22 21 20 41 41 H 1.09003 * 111.00980 * 206.22736 * 23 22 21 42 42 H 1.09001 * 111.04233 * 82.39033 * 23 22 21 43 43 H 1.09002 * 110.36690 * 274.66737 * 24 20 17 44 44 H 1.09005 * 110.36909 * 36.88709 * 24 20 17 45 45 H 1.08006 * 119.57087 * 179.72418 * 25 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3463 -0.0006 5 1 1.8904 2.3964 -1.2125 6 1 1.8904 2.3965 1.2125 7 6 2.0045 -1.1940 0.0005 8 1 3.0844 -1.1940 0.0010 9 6 1.2510 -2.4991 0.0005 10 6 2.2452 -3.6620 0.0005 11 6 1.4802 -4.9871 0.0012 12 7 2.4322 -6.1006 0.0006 13 6 1.9689 -7.4112 0.0004 14 6 0.5996 -7.6583 0.0015 15 6 0.1525 -8.9671 0.0019 16 6 1.0931 -9.9888 0.0018 17 16 0.5770 -11.6735 0.0030 18 8 -0.7356 -11.6914 -0.5411 19 8 1.6543 -12.4236 -0.5412 20 7 0.4338 -12.1412 1.5851 21 6 1.5002 -12.7391 2.4017 22 6 0.9023 -13.0305 3.7942 23 6 -0.6202 -13.1106 3.5065 24 6 -0.7859 -12.0330 2.4060 25 6 2.4363 -9.6712 0.0019 26 7 2.8343 -8.4131 0.0025 27 1 -0.4850 0.8401 0.0004 28 1 0.6246 -2.5571 -0.8896 29 1 0.6240 -2.5566 0.8903 30 1 2.8719 -3.6043 0.8905 31 1 2.8718 -3.6043 -0.8895 32 1 0.8532 -5.0450 -0.8885 33 1 0.8538 -5.0446 0.8914 34 1 3.3859 -5.9234 0.0002 35 1 -0.1045 -6.8394 0.0015 36 1 -0.9044 -9.1894 0.0022 37 1 1.8436 -13.6660 1.9422 38 1 2.3310 -12.0398 2.4962 39 1 1.1213 -12.2200 4.4893 40 1 1.2725 -13.9807 4.1791 41 1 -1.1996 -12.8553 4.3938 42 1 -0.8965 -14.0965 3.1326 43 1 -0.8553 -11.0415 2.8535 44 1 -1.6695 -12.2383 1.8016 45 1 3.1711 -10.4628 0.0063 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000264239448.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:30:37 Heat of formation + Delta-G solvation = -68.869045 kcal Electronic energy + Delta-G solvation = -26318.734212 eV Core-core repulsion = 22461.590912 eV Total energy + Delta-G solvation = -3857.143301 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -41.36715 -39.19016 -38.38603 -37.85915 -36.99136 -35.59107 -33.85781 -33.28639 -31.83206 -30.93221 -29.85569 -28.33337 -25.60178 -24.70114 -23.69765 -23.34521 -22.15694 -22.01409 -20.13840 -19.15871 -18.74933 -18.63070 -18.34086 -17.77747 -17.06880 -16.55194 -16.54247 -16.27712 -15.70436 -15.50067 -15.34923 -14.85836 -14.67581 -14.46013 -14.33214 -14.18791 -14.09913 -13.78835 -13.73114 -13.51493 -13.29469 -13.18946 -12.86048 -12.70158 -12.62497 -12.40289 -12.21302 -12.10583 -12.00715 -11.97443 -11.52701 -11.50752 -11.49048 -11.22443 -10.94854 -10.71126 -10.57934 -9.97771 -9.11021 -8.22998 -6.33159 -0.70854 -0.19543 0.18655 1.38849 1.40141 1.52192 1.88672 2.00399 2.39624 2.54060 2.77401 3.11338 3.11394 3.43540 3.66818 3.72826 3.81123 3.92311 4.01309 4.14673 4.14978 4.21501 4.42032 4.48078 4.61939 4.63626 4.64226 4.70738 4.73309 4.88266 4.92894 4.93431 5.03922 5.08505 5.10026 5.11073 5.22960 5.31269 5.41242 5.48497 5.50928 5.68167 5.77509 5.81689 6.20825 6.34563 6.83697 6.88480 7.36292 8.88757 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.023177 B = 0.001860 C = 0.001830 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1207.793110 B =15050.458821 C =15298.048965 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.930 5.930 2 C 0.000 4.000 3 Si 0.962 3.038 4 H -0.263 1.263 5 H -0.280 1.280 6 H -0.279 1.279 7 C -0.543 4.543 8 H 0.060 0.940 9 C 0.027 3.973 10 C -0.106 4.106 11 C 0.131 3.869 12 N -0.703 5.703 13 C 0.434 3.566 14 C -0.265 4.265 15 C 0.059 3.941 16 C -0.802 4.802 17 S 2.742 3.258 18 O -0.981 6.981 19 O -0.980 6.980 20 N -1.013 6.013 21 C 0.105 3.895 22 C -0.124 4.124 23 C -0.126 4.126 24 C 0.102 3.898 25 C 0.246 3.754 26 N -0.574 5.574 27 H 0.264 0.736 28 H -0.001 1.001 29 H 0.000 1.000 30 H 0.062 0.938 31 H 0.060 0.940 32 H 0.068 0.932 33 H 0.072 0.928 34 H 0.411 0.589 35 H 0.152 0.848 36 H 0.166 0.834 37 H 0.074 0.926 38 H 0.072 0.928 39 H 0.082 0.918 40 H 0.097 0.903 41 H 0.100 0.900 42 H 0.079 0.921 43 H 0.076 0.924 44 H 0.081 0.919 45 H 0.186 0.814 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.122 -28.813 8.276 29.978 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.571 5.571 2 C -0.198 4.198 3 Si 0.787 3.213 4 H -0.187 1.187 5 H -0.206 1.206 6 H -0.204 1.204 7 C -0.581 4.581 8 H 0.078 0.922 9 C -0.011 4.011 10 C -0.144 4.144 11 C 0.008 3.992 12 N -0.330 5.330 13 C 0.196 3.804 14 C -0.290 4.290 15 C 0.033 3.967 16 C -0.895 4.895 17 S 2.834 3.166 18 O -0.972 6.972 19 O -0.970 6.970 20 N -0.853 5.853 21 C -0.019 4.019 22 C -0.163 4.163 23 C -0.165 4.165 24 C -0.023 4.023 25 C 0.083 3.917 26 N -0.293 5.293 27 H 0.073 0.927 28 H 0.017 0.983 29 H 0.019 0.981 30 H 0.080 0.920 31 H 0.078 0.922 32 H 0.087 0.913 33 H 0.090 0.910 34 H 0.247 0.753 35 H 0.170 0.830 36 H 0.184 0.816 37 H 0.093 0.907 38 H 0.090 0.910 39 H 0.101 0.899 40 H 0.115 0.885 41 H 0.119 0.881 42 H 0.097 0.903 43 H 0.095 0.905 44 H 0.099 0.901 45 H 0.203 0.797 Dipole moment (debyes) X Y Z Total from point charges 0.573 -28.720 7.450 29.676 hybrid contribution -0.043 1.891 -0.004 1.892 sum 0.530 -26.829 7.446 27.848 Atomic orbital electron populations 1.70080 1.07634 1.27734 1.51612 1.25933 0.95775 1.03250 0.94841 0.85438 0.79083 0.79039 0.77722 1.18712 1.20561 1.20425 1.21693 0.93585 0.92322 1.50486 0.92176 1.18919 0.94269 0.92303 0.95624 1.21598 0.98707 0.92363 1.01708 1.21572 0.91603 0.84070 1.01999 1.45010 1.10558 1.01338 1.76086 1.18932 0.89872 0.86006 0.85617 1.21718 0.94718 0.99163 1.13449 1.21240 1.00196 0.90699 0.84567 1.31465 1.03112 1.25432 1.29490 1.00198 0.72282 0.72720 0.71400 1.93526 1.39532 1.87431 1.76685 1.93528 1.56886 1.69902 1.76721 1.58504 1.20747 1.76249 1.29802 1.22011 0.89406 0.98329 0.92164 1.22657 0.95224 1.03747 0.94697 1.22796 0.96679 0.98715 0.98295 1.22343 0.85969 1.00892 0.93071 1.22488 0.92950 0.92682 0.83608 1.67321 1.38416 1.00237 1.23348 0.92744 0.98301 0.98138 0.91970 0.92154 0.91339 0.91025 0.75267 0.83007 0.81637 0.90732 0.90984 0.89915 0.88473 0.88115 0.90273 0.90530 0.90050 0.79689 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -54.73 13.29 21.45 0.28 -54.44 16 2 C 0.00 0.00 5.46 84.65 0.46 0.47 16 3 Si 0.96 43.07 29.54 68.60 2.03 45.10 16 4 H -0.26 -11.25 7.11 99.48 0.71 -10.55 16 5 H -0.28 -12.29 7.11 99.48 0.71 -11.59 16 6 H -0.28 -12.18 7.11 99.48 0.71 -11.47 16 7 C -0.54 -29.48 9.11 25.60 0.23 -29.24 16 8 H 0.06 3.14 7.74 -2.91 -0.02 3.12 16 9 C 0.03 1.29 4.97 29.85 0.15 1.44 16 10 C -0.11 -3.82 5.27 30.60 0.16 -3.66 16 11 C 0.13 3.85 4.89 86.38 0.42 4.28 16 12 N -0.70 -19.02 5.73 -345.07 -1.98 -21.00 16 13 C 0.43 11.92 7.65 133.06 1.02 12.94 16 14 C -0.26 -6.53 9.33 22.50 0.21 -6.32 16 15 C 0.06 1.30 9.64 22.44 0.22 1.52 16 16 C -0.80 -17.69 5.99 22.37 0.13 -17.56 16 17 S 2.74 57.12 5.95 -56.49 -0.34 56.79 16 18 O -0.98 -24.98 16.68 -128.00 -2.13 -27.12 16 19 O -0.98 -24.59 16.88 -128.00 -2.16 -26.75 16 20 N -1.01 -15.15 3.70 -506.43 -1.87 -17.02 16 21 C 0.11 1.18 6.98 86.73 0.61 1.79 16 22 C -0.12 -0.81 6.95 31.78 0.22 -0.59 16 23 C -0.13 -0.86 7.08 31.99 0.23 -0.63 16 24 C 0.10 1.15 7.11 86.86 0.62 1.77 16 25 C 0.25 5.77 10.67 84.62 0.90 6.67 16 26 N -0.57 -15.73 10.39 -193.26 -2.01 -17.74 16 27 H 0.26 14.58 8.31 -92.70 -0.77 13.81 16 28 H 0.00 -0.07 8.14 -2.39 -0.02 -0.09 16 29 H 0.00 0.01 8.14 -2.39 -0.02 -0.01 16 30 H 0.06 2.19 8.14 -2.39 -0.02 2.17 16 31 H 0.06 2.15 8.14 -2.39 -0.02 2.13 16 32 H 0.07 2.00 7.93 -2.39 -0.02 1.98 16 33 H 0.07 2.05 7.93 -2.39 -0.02 2.03 16 34 H 0.41 10.51 8.60 -92.71 -0.80 9.72 16 35 H 0.15 3.40 6.71 -2.91 -0.02 3.38 16 36 H 0.17 2.88 7.70 -2.91 -0.02 2.86 16 37 H 0.07 0.82 8.14 -2.39 -0.02 0.80 16 38 H 0.07 0.72 8.14 -2.39 -0.02 0.70 16 39 H 0.08 0.47 8.14 -2.39 -0.02 0.45 16 40 H 0.10 0.36 8.14 -2.39 -0.02 0.34 16 41 H 0.10 0.37 8.14 -2.39 -0.02 0.35 16 42 H 0.08 0.52 8.14 -2.39 -0.02 0.50 16 43 H 0.08 0.73 8.14 -2.39 -0.02 0.71 16 44 H 0.08 0.97 7.78 -2.38 -0.02 0.95 16 45 H 0.19 3.44 7.62 -2.91 -0.02 3.42 16 Total: -1.00 -71.20 384.44 -2.40 -73.60 By element: Atomic # 1 Polarization: 15.53 SS G_CDS: 0.20 Total: 15.72 kcal Atomic # 6 Polarization: -32.73 SS G_CDS: 5.58 Total: -27.15 kcal Atomic # 7 Polarization: -104.62 SS G_CDS: -5.57 Total: -110.20 kcal Atomic # 8 Polarization: -49.57 SS G_CDS: -4.29 Total: -53.86 kcal Atomic # 14 Polarization: 43.07 SS G_CDS: 2.03 Total: 45.10 kcal Atomic # 16 Polarization: 57.12 SS G_CDS: -0.34 Total: 56.79 kcal Total: -71.20 -2.40 -73.60 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000264239448.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.731 kcal (2) G-P(sol) polarization free energy of solvation -71.198 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.467 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.402 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.600 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.869 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds