Wall clock time and date at job start Tue Mar 31 2020 22:52:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17400 * 1 3 3 C 1.47199 * 179.97438 * 2 1 4 4 N 1.46501 * 109.47111 * 175.75475 * 3 2 1 5 5 C 1.37105 * 119.99684 * 263.92766 * 4 3 2 6 6 H 1.08004 * 119.99444 * 199.75098 * 5 4 3 7 7 C 1.38945 * 120.00131 * 19.75132 * 5 4 3 8 8 N 1.31410 * 120.00052 * 21.74758 * 7 5 4 9 9 Si 1.86808 * 119.99788 * 201.74652 * 7 5 4 10 10 H 1.48502 * 109.47057 * 90.00186 * 9 7 5 11 11 H 1.48497 * 109.47122 * 210.00013 * 9 7 5 12 12 H 1.48495 * 109.47170 * 330.00260 * 9 7 5 13 13 C 1.34772 * 120.00070 * 83.92526 * 4 3 2 14 14 O 1.21300 * 120.00077 * 179.97438 * 13 4 3 15 15 C 1.50695 * 119.99895 * 0.02562 * 13 4 3 16 16 C 1.53007 * 109.47004 * 179.97438 * 15 13 4 17 17 N 1.46500 * 109.47197 * 180.02562 * 16 15 13 18 18 C 1.35859 * 119.69394 * 270.00391 * 17 16 15 19 19 N 1.29843 * 123.36135 * 180.02562 * 18 17 16 20 20 C 1.35659 * 121.61538 * 359.97438 * 19 18 17 21 21 C 1.39645 * 121.63729 * 179.97438 * 20 19 18 22 22 C 1.50696 * 120.16303 * 0.02562 * 21 20 19 23 23 C 1.37671 * 119.67817 * 180.02562 * 21 20 19 24 24 C 1.38885 * 120.82177 * 359.97438 * 23 21 20 25 25 C 1.37759 * 120.56689 * 0.02562 * 24 23 21 26 26 C 1.39338 * 119.52389 * 0.02562 * 25 24 23 27 27 C 1.35343 * 119.69947 * 89.99625 * 17 16 15 28 28 O 1.21728 * 121.29704 * 359.97438 * 27 17 16 29 29 H 4.40633 * 5.51499 * 179.97438 * 4 1 2 30 30 H 1.09006 * 109.46946 * 55.75552 * 3 2 1 31 31 H 1.08998 * 109.47324 * 295.75356 * 3 2 1 32 32 H 0.97000 * 119.99507 * 180.02562 * 8 7 5 33 33 H 1.09000 * 109.47177 * 59.99835 * 15 13 4 34 34 H 1.08997 * 109.47434 * 299.99476 * 15 13 4 35 35 H 1.09000 * 109.47092 * 60.00023 * 16 15 13 36 36 H 1.09000 * 109.46958 * 299.99622 * 16 15 13 37 37 H 1.07996 * 118.32434 * 359.97438 * 18 17 16 38 38 H 1.09007 * 109.46739 * 89.99794 * 22 21 20 39 39 H 1.08996 * 109.47262 * 210.00072 * 22 21 20 40 40 H 1.08999 * 109.46807 * 330.00768 * 22 21 20 41 41 H 1.07995 * 119.58466 * 179.97438 * 23 21 20 42 42 H 1.07999 * 119.71214 * 180.02562 * 24 23 21 43 43 H 1.08004 * 120.24012 * 180.02562 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1337 1.3783 -0.1022 5 6 3.4804 1.8938 -1.3245 6 1 4.1232 2.7597 -1.3826 7 6 3.0048 1.3022 -2.4882 8 7 1.9241 0.5554 -2.4514 9 14 3.9015 1.5685 -4.1052 10 1 4.9279 0.5100 -4.2822 11 1 2.9294 1.5077 -5.2262 12 1 4.5600 2.8994 -4.0927 13 6 3.2415 2.1389 1.0051 14 8 3.6458 3.2794 0.9205 15 6 2.8610 1.5721 2.3485 16 6 3.0764 2.6334 3.4294 17 7 2.7070 2.0822 4.7355 18 6 1.4305 2.2090 5.1829 19 7 1.0260 1.7486 6.3276 20 6 1.8670 1.0973 7.1695 21 6 1.4326 0.6024 8.4009 22 6 -0.0016 0.7840 8.8266 23 6 2.3209 -0.0521 9.2243 24 6 3.6455 -0.2276 8.8455 25 6 4.0976 0.2517 7.6356 26 6 3.2150 0.9180 6.7879 27 6 3.6405 1.4512 5.4854 28 8 4.7876 1.3300 5.0966 29 1 -1.0501 -0.0003 -0.0002 30 1 3.0096 -0.5775 -0.8496 31 1 3.0096 -0.4457 0.9256 32 1 1.5924 0.1421 -3.2638 33 1 3.4814 0.7024 2.5649 34 1 1.8122 1.2756 2.3339 35 1 2.4562 3.5033 3.2132 36 1 4.1253 2.9295 3.4439 37 1 0.7157 2.7196 4.5546 38 1 -0.5926 -0.0654 8.4838 39 1 -0.0527 0.8472 9.9135 40 1 -0.3967 1.7013 8.3901 41 1 1.9834 -0.4338 10.1765 42 1 4.3269 -0.7441 9.5052 43 1 5.1287 0.1119 7.3462 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000281602788.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:52:32 Heat of formation + Delta-G solvation = 47.009916 kcal Electronic energy + Delta-G solvation = -28413.329701 eV Core-core repulsion = 24425.767338 eV Total energy + Delta-G solvation = -3987.562363 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 339.137 amu Computer time = 1.55 seconds Orbital eigenvalues (eV) -41.69326 -39.12696 -38.55442 -37.51838 -35.41622 -34.60013 -33.13595 -32.26126 -31.30870 -30.58232 -30.38067 -27.18291 -26.60580 -25.77674 -24.64600 -24.34662 -22.69764 -21.15510 -19.13571 -18.95431 -18.55161 -17.94155 -17.38654 -16.65221 -16.11553 -15.92762 -15.41027 -15.29920 -15.04036 -14.76687 -14.41329 -14.24906 -14.06674 -13.96658 -13.61707 -13.44847 -13.05903 -12.72949 -12.51670 -12.40438 -12.22600 -12.15338 -11.97919 -11.84271 -11.73465 -11.61661 -11.07153 -10.97173 -10.53163 -10.38871 -10.25726 -10.04416 -10.00381 -9.44289 -9.32316 -9.16034 -8.98644 -8.55750 -8.09118 -7.93627 -6.39700 -3.94052 0.40548 0.64999 2.08493 2.39982 2.65742 3.11210 3.22784 3.27010 3.58697 3.80102 3.83348 3.91723 3.96600 4.10218 4.13354 4.49641 4.59304 4.66946 4.87140 4.96347 4.98897 5.03035 5.14478 5.18669 5.28048 5.38239 5.39527 5.52531 5.56683 5.59576 5.81075 5.82979 5.93443 5.98823 6.06859 6.13154 6.21779 6.26830 6.28130 6.53652 6.63740 6.66057 6.94396 7.50561 7.65188 7.76394 7.96748 8.33556 8.73328 9.04779 9.26918 9.79998 10.60814 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.020739 B = 0.002615 C = 0.002495 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1349.779867 B =10704.925596 C =11220.147557 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.256 4.256 2 C -0.116 4.116 3 C 0.231 3.769 4 N -0.435 5.435 5 C -0.318 4.318 6 H 0.105 0.895 7 C 0.033 3.967 8 N -0.858 5.858 9 Si 0.921 3.079 10 H -0.277 1.277 11 H -0.285 1.285 12 H -0.269 1.269 13 C 0.456 3.544 14 O -0.584 6.584 15 C -0.148 4.148 16 C 0.114 3.886 17 N -0.543 5.543 18 C 0.384 3.616 19 N -0.530 5.530 20 C 0.155 3.845 21 C -0.081 4.081 22 C -0.103 4.103 23 C -0.081 4.081 24 C -0.140 4.140 25 C -0.047 4.047 26 C -0.193 4.193 27 C 0.544 3.456 28 O -0.504 6.504 29 H 0.200 0.800 30 H 0.107 0.893 31 H 0.062 0.938 32 H 0.269 0.731 33 H 0.083 0.917 34 H 0.086 0.914 35 H 0.104 0.896 36 H 0.107 0.893 37 H 0.202 0.798 38 H 0.070 0.930 39 H 0.062 0.938 40 H 0.078 0.922 41 H 0.131 0.869 42 H 0.131 0.869 43 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.712 -3.445 19.885 20.520 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.275 4.275 2 C -0.117 4.117 3 C 0.108 3.892 4 N -0.153 5.153 5 C -0.445 4.445 6 H 0.123 0.877 7 C -0.172 4.172 8 N -0.496 5.496 9 Si 0.748 3.252 10 H -0.203 1.203 11 H -0.211 1.211 12 H -0.193 1.193 13 C 0.243 3.757 14 O -0.469 6.469 15 C -0.189 4.189 16 C -0.008 4.008 17 N -0.265 5.265 18 C 0.097 3.903 19 N -0.251 5.251 20 C 0.046 3.954 21 C -0.083 4.083 22 C -0.160 4.160 23 C -0.100 4.100 24 C -0.158 4.158 25 C -0.066 4.066 26 C -0.199 4.199 27 C 0.337 3.663 28 O -0.378 6.378 29 H 0.217 0.783 30 H 0.125 0.875 31 H 0.080 0.920 32 H 0.079 0.921 33 H 0.102 0.898 34 H 0.104 0.896 35 H 0.122 0.878 36 H 0.125 0.875 37 H 0.218 0.782 38 H 0.088 0.912 39 H 0.081 0.919 40 H 0.097 0.903 41 H 0.149 0.851 42 H 0.149 0.851 43 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges -3.592 -3.064 19.832 20.386 hybrid contribution 0.725 -0.260 -1.357 1.561 sum -2.866 -3.325 18.474 18.989 Atomic orbital electron populations 1.24276 0.95346 1.01722 1.06172 1.23109 0.94281 0.98701 0.95632 1.18226 0.84412 0.85620 1.00980 1.43663 1.55542 1.09572 1.06499 1.19662 1.28491 1.15506 0.80856 0.87739 1.25317 0.94923 0.97320 0.99598 1.70084 1.17781 1.32332 1.29361 0.86004 0.79158 0.79140 0.80907 1.20291 1.21084 1.19333 1.19676 0.84776 0.86146 0.85060 1.90542 1.51446 1.18351 1.86547 1.21881 1.03225 0.99401 0.94376 1.21782 1.04989 0.96380 0.77654 1.46848 1.10380 1.49264 1.19993 1.24877 0.84060 0.89975 0.91434 1.68658 1.34256 1.18261 1.03918 1.18654 0.88499 0.94442 0.93854 1.19630 0.97286 0.98977 0.92379 1.20633 0.91301 1.03424 1.00647 1.21164 0.92997 0.96611 0.99230 1.21124 0.96057 1.01853 0.96771 1.21001 0.99489 0.93607 0.92549 1.20610 0.95685 1.07309 0.96329 1.18443 0.85114 0.78188 0.84596 1.90886 1.17693 1.56399 1.72831 0.78320 0.87502 0.91997 0.92065 0.89824 0.89585 0.87797 0.87476 0.78183 0.91159 0.91894 0.90269 0.85147 0.85133 0.84594 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.26 -5.05 19.25 29.55 0.57 -4.48 16 2 C -0.12 -2.48 10.75 -37.12 -0.40 -2.88 16 3 C 0.23 4.96 4.91 -6.83 -0.03 4.93 16 4 N -0.43 -10.59 2.60 -117.93 -0.31 -10.90 16 5 C -0.32 -8.50 9.28 -14.93 -0.14 -8.64 16 6 H 0.10 2.95 7.42 -52.48 -0.39 2.56 16 7 C 0.03 0.85 4.83 -17.47 -0.08 0.77 16 8 N -0.86 -21.97 9.59 55.50 0.53 -21.44 16 9 Si 0.92 20.08 29.61 -169.99 -5.03 15.05 16 10 H -0.28 -5.93 7.11 56.52 0.40 -5.53 16 11 H -0.29 -6.20 7.11 56.52 0.40 -5.79 16 12 H -0.27 -5.93 7.11 56.52 0.40 -5.53 16 13 C 0.46 10.42 7.56 -10.99 -0.08 10.34 16 14 O -0.58 -15.10 15.65 5.54 0.09 -15.01 16 15 C -0.15 -2.56 4.63 -27.88 -0.13 -2.69 16 16 C 0.11 1.72 4.65 -4.04 -0.02 1.70 16 17 N -0.54 -7.43 2.61 -118.86 -0.31 -7.74 16 18 C 0.38 4.35 11.41 -90.17 -1.03 3.32 16 19 N -0.53 -6.50 9.47 -12.01 -0.11 -6.61 16 20 C 0.16 1.98 6.60 -84.51 -0.56 1.42 16 21 C -0.08 -0.85 5.91 -104.31 -0.62 -1.47 16 22 C -0.10 -0.86 9.81 36.00 0.35 -0.50 16 23 C -0.08 -0.71 9.66 -39.55 -0.38 -1.09 16 24 C -0.14 -1.28 10.02 -39.52 -0.40 -1.67 16 25 C -0.05 -0.55 9.68 -39.35 -0.38 -0.94 16 26 C -0.19 -2.67 5.89 -104.78 -0.62 -3.28 16 27 C 0.54 8.48 7.66 -12.44 -0.10 8.38 16 28 O -0.50 -9.26 16.32 5.16 0.08 -9.18 16 29 H 0.20 3.17 7.80 -54.08 -0.42 2.75 16 30 H 0.11 2.43 6.60 -51.93 -0.34 2.09 16 31 H 0.06 1.13 6.69 -51.93 -0.35 0.78 16 32 H 0.27 6.61 8.31 -40.82 -0.34 6.27 16 33 H 0.08 1.44 7.42 -51.93 -0.39 1.06 16 34 H 0.09 1.39 7.49 -51.93 -0.39 1.00 16 35 H 0.10 1.41 7.95 -51.93 -0.41 1.00 16 36 H 0.11 1.84 7.42 -51.93 -0.39 1.46 16 37 H 0.20 1.55 7.99 -52.49 -0.42 1.13 16 38 H 0.07 0.55 8.14 -51.92 -0.42 0.13 16 39 H 0.06 0.39 8.09 -51.93 -0.42 -0.03 16 40 H 0.08 0.72 7.57 -51.93 -0.39 0.32 16 41 H 0.13 0.76 8.06 -52.49 -0.42 0.34 16 42 H 0.13 0.83 8.06 -52.49 -0.42 0.41 16 43 H 0.14 1.54 7.83 -52.48 -0.41 1.13 16 LS Contribution 372.51 15.07 5.61 5.61 Total: -1.00 -32.85 372.51 -8.60 -41.45 By element: Atomic # 1 Polarization: 10.67 SS G_CDS: -5.12 Total: 5.55 kcal Atomic # 6 Polarization: 7.26 SS G_CDS: -4.04 Total: 3.22 kcal Atomic # 7 Polarization: -46.49 SS G_CDS: -0.20 Total: -46.69 kcal Atomic # 8 Polarization: -24.36 SS G_CDS: 0.17 Total: -24.19 kcal Atomic # 14 Polarization: 20.08 SS G_CDS: -5.03 Total: 15.05 kcal Total LS contribution 5.61 Total: 5.61 kcal Total: -32.85 -8.60 -41.45 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000281602788.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 88.460 kcal (2) G-P(sol) polarization free energy of solvation -32.846 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 55.614 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.604 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.450 kcal (6) G-S(sol) free energy of system = (1) + (5) 47.010 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.55 seconds