Wall clock time and date at job start Tue Mar 31 2020 22:52:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17400 * 1 3 3 C 1.47199 * 179.97438 * 2 1 4 4 N 1.46501 * 109.47111 * 175.75475 * 3 2 1 5 5 C 1.37105 * 119.99684 * 263.92766 * 4 3 2 6 6 H 1.08004 * 119.99444 * 199.75098 * 5 4 3 7 7 C 1.38945 * 120.00131 * 19.75132 * 5 4 3 8 8 N 1.31410 * 120.00052 * 21.74758 * 7 5 4 9 9 Si 1.86808 * 119.99788 * 201.74652 * 7 5 4 10 10 H 1.48502 * 109.47057 * 90.00186 * 9 7 5 11 11 H 1.48497 * 109.47122 * 210.00013 * 9 7 5 12 12 H 1.48495 * 109.47170 * 330.00260 * 9 7 5 13 13 C 1.34772 * 120.00070 * 83.92526 * 4 3 2 14 14 O 1.21300 * 120.00077 * 179.97438 * 13 4 3 15 15 C 1.50695 * 119.99895 * 0.02562 * 13 4 3 16 16 C 1.53007 * 109.47004 * 179.97438 * 15 13 4 17 17 N 1.46500 * 109.47197 * 180.02562 * 16 15 13 18 18 C 1.35859 * 119.69394 * 270.00391 * 17 16 15 19 19 N 1.29843 * 123.36135 * 180.02562 * 18 17 16 20 20 C 1.35659 * 121.61538 * 359.97438 * 19 18 17 21 21 C 1.39645 * 121.63729 * 179.97438 * 20 19 18 22 22 C 1.50696 * 120.16303 * 0.02562 * 21 20 19 23 23 C 1.37671 * 119.67817 * 180.02562 * 21 20 19 24 24 C 1.38885 * 120.82177 * 359.97438 * 23 21 20 25 25 C 1.37759 * 120.56689 * 0.02562 * 24 23 21 26 26 C 1.39338 * 119.52389 * 0.02562 * 25 24 23 27 27 C 1.35343 * 119.69947 * 89.99625 * 17 16 15 28 28 O 1.21728 * 121.29704 * 359.97438 * 27 17 16 29 29 H 4.40633 * 5.51499 * 179.97438 * 4 1 2 30 30 H 1.09006 * 109.46946 * 55.75552 * 3 2 1 31 31 H 1.08998 * 109.47324 * 295.75356 * 3 2 1 32 32 H 0.97000 * 119.99507 * 180.02562 * 8 7 5 33 33 H 1.09000 * 109.47177 * 59.99835 * 15 13 4 34 34 H 1.08997 * 109.47434 * 299.99476 * 15 13 4 35 35 H 1.09000 * 109.47092 * 60.00023 * 16 15 13 36 36 H 1.09000 * 109.46958 * 299.99622 * 16 15 13 37 37 H 1.07996 * 118.32434 * 359.97438 * 18 17 16 38 38 H 1.09007 * 109.46739 * 89.99794 * 22 21 20 39 39 H 1.08996 * 109.47262 * 210.00072 * 22 21 20 40 40 H 1.08999 * 109.46807 * 330.00768 * 22 21 20 41 41 H 1.07995 * 119.58466 * 179.97438 * 23 21 20 42 42 H 1.07999 * 119.71214 * 180.02562 * 24 23 21 43 43 H 1.08004 * 120.24012 * 180.02562 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1337 1.3783 -0.1022 5 6 3.4804 1.8938 -1.3245 6 1 4.1232 2.7597 -1.3826 7 6 3.0048 1.3022 -2.4882 8 7 1.9241 0.5554 -2.4514 9 14 3.9015 1.5685 -4.1052 10 1 4.9279 0.5100 -4.2822 11 1 2.9294 1.5077 -5.2262 12 1 4.5600 2.8994 -4.0927 13 6 3.2415 2.1389 1.0051 14 8 3.6458 3.2794 0.9205 15 6 2.8610 1.5721 2.3485 16 6 3.0764 2.6334 3.4294 17 7 2.7070 2.0822 4.7355 18 6 1.4305 2.2090 5.1829 19 7 1.0260 1.7486 6.3276 20 6 1.8670 1.0973 7.1695 21 6 1.4326 0.6024 8.4009 22 6 -0.0016 0.7840 8.8266 23 6 2.3209 -0.0521 9.2243 24 6 3.6455 -0.2276 8.8455 25 6 4.0976 0.2517 7.6356 26 6 3.2150 0.9180 6.7879 27 6 3.6405 1.4512 5.4854 28 8 4.7876 1.3300 5.0966 29 1 -1.0501 -0.0003 -0.0002 30 1 3.0096 -0.5775 -0.8496 31 1 3.0096 -0.4457 0.9256 32 1 1.5924 0.1421 -3.2638 33 1 3.4814 0.7024 2.5649 34 1 1.8122 1.2756 2.3339 35 1 2.4562 3.5033 3.2132 36 1 4.1253 2.9295 3.4439 37 1 0.7157 2.7196 4.5546 38 1 -0.5926 -0.0654 8.4838 39 1 -0.0527 0.8472 9.9135 40 1 -0.3967 1.7013 8.3901 41 1 1.9834 -0.4338 10.1765 42 1 4.3269 -0.7441 9.5052 43 1 5.1287 0.1119 7.3462 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000281602788.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:52:30 Heat of formation + Delta-G solvation = 29.621835 kcal Electronic energy + Delta-G solvation = -28414.083705 eV Core-core repulsion = 24425.767338 eV Total energy + Delta-G solvation = -3988.316367 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 339.137 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -42.71671 -40.64656 -39.75572 -38.60061 -37.18974 -35.75354 -34.13108 -33.90418 -33.04430 -31.94149 -31.27402 -28.34383 -27.91176 -27.26499 -25.82493 -25.55251 -23.94846 -22.01904 -20.82864 -19.86255 -19.69854 -19.54814 -18.72439 -18.32706 -17.51721 -17.18596 -16.53983 -16.47771 -16.24419 -16.15394 -15.95330 -15.77204 -15.02719 -14.87815 -14.84869 -14.54685 -14.42611 -14.11085 -13.90828 -13.83103 -13.53469 -13.37230 -13.19266 -12.86329 -12.77685 -12.67737 -12.57617 -12.51207 -12.29841 -12.16278 -11.38833 -11.18404 -11.10372 -11.09979 -10.97641 -10.66845 -10.37816 -10.00097 -9.84890 -9.00536 -8.33581 -5.95659 -0.47423 -0.23423 1.09916 1.29540 1.35605 1.43078 1.53319 1.76336 1.86157 2.11587 2.32040 2.37642 2.89837 3.01772 3.02336 3.15455 3.21781 3.66837 3.72220 3.79465 3.81081 3.86784 4.00483 4.10276 4.21638 4.25099 4.37534 4.47034 4.54258 4.66374 4.70595 4.79216 4.88082 4.89773 4.93143 5.10051 5.19274 5.29940 5.37772 5.41582 5.45547 5.46561 5.58073 5.86523 6.03432 6.40046 6.53099 6.81925 7.11354 7.14502 7.37954 7.93092 8.64589 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.020739 B = 0.002615 C = 0.002495 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1349.779867 B =10704.925596 C =11220.147557 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.234 4.234 2 C -0.159 4.159 3 C 0.235 3.765 4 N -0.449 5.449 5 C -0.353 4.353 6 H 0.076 0.924 7 C 0.006 3.994 8 N -0.867 5.867 9 Si 0.981 3.019 10 H -0.268 1.268 11 H -0.277 1.277 12 H -0.277 1.277 13 C 0.448 3.552 14 O -0.622 6.622 15 C -0.128 4.128 16 C 0.126 3.874 17 N -0.540 5.540 18 C 0.377 3.623 19 N -0.528 5.528 20 C 0.132 3.868 21 C -0.088 4.088 22 C -0.100 4.100 23 C -0.071 4.071 24 C -0.126 4.126 25 C -0.068 4.068 26 C -0.217 4.217 27 C 0.533 3.467 28 O -0.549 6.549 29 H 0.235 0.765 30 H 0.088 0.912 31 H 0.089 0.911 32 H 0.272 0.728 33 H 0.083 0.917 34 H 0.105 0.895 35 H 0.122 0.878 36 H 0.080 0.920 37 H 0.238 0.762 38 H 0.075 0.925 39 H 0.088 0.912 40 H 0.068 0.932 41 H 0.170 0.830 42 H 0.164 0.836 43 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.853 -4.720 21.907 23.161 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.252 4.252 2 C -0.161 4.161 3 C 0.112 3.888 4 N -0.166 5.166 5 C -0.481 4.481 6 H 0.094 0.906 7 C -0.198 4.198 8 N -0.503 5.503 9 Si 0.806 3.194 10 H -0.193 1.193 11 H -0.202 1.202 12 H -0.202 1.202 13 C 0.237 3.763 14 O -0.510 6.510 15 C -0.169 4.169 16 C 0.004 3.996 17 N -0.261 5.261 18 C 0.091 3.909 19 N -0.248 5.248 20 C 0.023 3.977 21 C -0.090 4.090 22 C -0.157 4.157 23 C -0.089 4.089 24 C -0.144 4.144 25 C -0.087 4.087 26 C -0.223 4.223 27 C 0.328 3.672 28 O -0.426 6.426 29 H 0.252 0.748 30 H 0.106 0.894 31 H 0.107 0.893 32 H 0.082 0.918 33 H 0.102 0.898 34 H 0.123 0.877 35 H 0.140 0.860 36 H 0.099 0.901 37 H 0.253 0.747 38 H 0.094 0.906 39 H 0.106 0.894 40 H 0.087 0.913 41 H 0.188 0.812 42 H 0.181 0.819 43 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -5.786 -4.369 21.885 23.055 hybrid contribution 1.318 0.091 -1.852 2.275 sum -4.468 -4.279 20.034 20.967 Atomic orbital electron populations 1.25140 0.96238 0.99643 1.04195 1.23265 0.94745 1.00582 0.97463 1.18205 0.85109 0.83973 1.01504 1.43860 1.55769 1.10786 1.06227 1.19539 1.29764 1.16004 0.82770 0.90627 1.25948 0.95233 0.96772 1.01847 1.70164 1.17939 1.32083 1.30129 0.85116 0.78250 0.78691 0.77372 1.19273 1.20231 1.20214 1.20519 0.83472 0.85731 0.86549 1.90505 1.52855 1.20157 1.87448 1.21707 1.04004 0.99574 0.91638 1.21520 1.03952 0.96254 0.77921 1.46747 1.11125 1.49105 1.19097 1.25579 0.83448 0.90105 0.91797 1.68685 1.34117 1.17953 1.04010 1.18975 0.88175 0.95489 0.95094 1.20052 0.98809 0.98485 0.91626 1.20666 0.89717 1.03072 1.02211 1.21641 0.92272 0.94877 1.00148 1.21529 0.96962 1.00240 0.95688 1.21159 0.99236 0.94562 0.93762 1.20694 0.96822 1.08831 0.95914 1.18910 0.84844 0.77985 0.85467 1.90845 1.19401 1.58437 1.73950 0.74821 0.89371 0.89328 0.91783 0.89838 0.87689 0.85964 0.90108 0.74660 0.90608 0.89362 0.91320 0.81233 0.81870 0.85254 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.23 -8.69 19.25 74.32 1.43 -7.26 16 2 C -0.16 -6.69 10.75 31.12 0.33 -6.36 16 3 C 0.23 10.19 4.91 84.57 0.42 10.61 16 4 N -0.45 -22.51 2.60 -645.41 -1.68 -24.18 16 5 C -0.35 -19.59 9.28 84.04 0.78 -18.81 16 6 H 0.08 4.53 7.42 -2.91 -0.02 4.51 16 7 C 0.01 0.32 4.83 84.93 0.41 0.73 16 8 N -0.87 -44.28 9.59 21.66 0.21 -44.07 16 9 Si 0.98 41.65 29.61 68.60 2.03 43.68 16 10 H -0.27 -10.90 7.11 99.48 0.71 -10.19 16 11 H -0.28 -11.34 7.11 99.48 0.71 -10.64 16 12 H -0.28 -12.05 7.11 99.48 0.71 -11.34 16 13 C 0.45 21.16 7.56 87.66 0.66 21.82 16 14 O -0.62 -33.63 15.65 -3.09 -0.05 -33.68 16 15 C -0.13 -4.50 4.63 29.85 0.14 -4.36 16 16 C 0.13 3.91 4.65 86.38 0.40 4.31 16 17 N -0.54 -14.89 2.61 -647.83 -1.69 -16.57 16 18 C 0.38 8.13 11.41 180.19 2.06 10.18 16 19 N -0.53 -12.28 9.47 -191.92 -1.82 -14.09 16 20 C 0.13 3.23 6.60 39.63 0.26 3.49 16 21 C -0.09 -1.63 5.91 -19.66 -0.12 -1.74 16 22 C -0.10 -1.34 9.81 71.23 0.70 -0.65 16 23 C -0.07 -0.97 9.66 22.29 0.22 -0.76 16 24 C -0.13 -1.97 10.02 22.31 0.22 -1.74 16 25 C -0.07 -1.57 9.68 22.42 0.22 -1.36 16 26 C -0.22 -6.02 5.89 -19.97 -0.12 -6.13 16 27 C 0.53 17.28 7.66 86.46 0.66 17.94 16 28 O -0.55 -21.48 16.32 -4.44 -0.07 -21.55 16 29 H 0.24 6.59 7.80 -4.41 -0.03 6.55 16 30 H 0.09 4.10 6.60 -2.38 -0.02 4.09 16 31 H 0.09 3.25 6.69 -2.39 -0.02 3.24 16 32 H 0.27 13.19 8.31 -92.71 -0.77 12.42 16 33 H 0.08 2.94 7.42 -2.39 -0.02 2.92 16 34 H 0.10 3.29 7.49 -2.39 -0.02 3.27 16 35 H 0.12 3.30 7.95 -2.39 -0.02 3.28 16 36 H 0.08 2.96 7.42 -2.39 -0.02 2.95 16 37 H 0.24 3.11 7.99 -2.91 -0.02 3.08 16 38 H 0.08 0.95 8.14 -2.38 -0.02 0.93 16 39 H 0.09 0.74 8.09 -2.39 -0.02 0.72 16 40 H 0.07 1.08 7.57 -2.39 -0.02 1.06 16 41 H 0.17 1.02 8.06 -2.91 -0.02 1.00 16 42 H 0.16 1.44 8.06 -2.91 -0.02 1.41 16 43 H 0.13 3.07 7.83 -2.91 -0.02 3.04 16 Total: -1.00 -74.88 372.51 6.65 -68.23 By element: Atomic # 1 Polarization: 21.28 SS G_CDS: 1.04 Total: 22.32 kcal Atomic # 6 Polarization: 11.25 SS G_CDS: 8.67 Total: 19.92 kcal Atomic # 7 Polarization: -93.95 SS G_CDS: -4.97 Total: -98.93 kcal Atomic # 8 Polarization: -55.10 SS G_CDS: -0.12 Total: -55.22 kcal Atomic # 14 Polarization: 41.65 SS G_CDS: 2.03 Total: 43.68 kcal Total: -74.88 6.65 -68.23 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000281602788.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 97.848 kcal (2) G-P(sol) polarization free energy of solvation -74.877 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.971 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.651 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.226 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.622 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds