Wall clock time and date at job start Tue Mar 31 2020 22:37:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31507 * 1 3 3 Si 1.86807 * 120.00060 * 2 1 4 4 H 1.48505 * 109.47028 * 270.00230 * 3 2 1 5 5 H 1.48503 * 109.46757 * 30.00191 * 3 2 1 6 6 H 1.48499 * 109.47226 * 149.99981 * 3 2 1 7 7 C 1.37879 * 120.00470 * 180.02562 * 2 1 3 8 8 H 1.07996 * 119.99489 * 359.97438 * 7 2 1 9 9 C 1.50696 * 120.00358 * 180.02562 * 7 2 1 10 10 C 1.52999 * 109.47151 * 180.02562 * 9 7 2 11 11 C 1.53002 * 109.47112 * 179.97438 * 10 9 7 12 12 N 1.46498 * 109.47074 * 179.97438 * 11 10 9 13 13 C 1.39006 * 120.00198 * 179.97438 * 12 11 10 14 14 C 1.39132 * 119.70145 * 0.02562 * 13 12 11 15 15 C 1.38301 * 119.09623 * 179.97438 * 14 13 12 16 16 S 1.76202 * 120.74912 * 179.97438 * 15 14 13 17 17 O 1.42105 * 106.39927 * 336.45629 * 16 15 14 18 18 O 1.42097 * 106.39908 * 203.53712 * 16 15 14 19 19 N 1.65602 * 107.21989 * 89.99684 * 16 15 14 20 20 C 1.47020 * 125.64698 * 90.00001 * 19 16 15 21 21 C 1.54324 * 107.39983 * 178.98108 * 20 19 16 22 22 C 1.55154 * 102.94319 * 337.73017 * 21 20 19 23 23 C 1.47739 * 125.81746 * 269.89490 * 19 16 15 24 24 C 1.38881 * 118.50561 * 0.24624 * 15 14 13 25 25 C 1.38033 * 119.32633 * 359.48490 * 24 15 14 26 26 N 1.31970 * 120.85418 * 0.52824 * 25 24 15 27 27 H 0.97004 * 120.00323 * 359.97438 * 1 2 3 28 28 H 1.08999 * 109.47380 * 59.99295 * 9 7 2 29 29 H 1.09003 * 109.46853 * 299.99567 * 9 7 2 30 30 H 1.09003 * 109.46873 * 59.99508 * 10 9 7 31 31 H 1.09003 * 109.46868 * 299.99532 * 10 9 7 32 32 H 1.08994 * 109.47365 * 59.99865 * 11 10 9 33 33 H 1.09003 * 109.47084 * 299.99659 * 11 10 9 34 34 H 0.97004 * 120.00278 * 359.97438 * 12 11 10 35 35 H 1.08004 * 120.45500 * 359.97438 * 14 13 12 36 36 H 1.09002 * 109.88367 * 59.48607 * 20 19 16 37 37 H 1.09000 * 109.88319 * 298.47226 * 20 19 16 38 38 H 1.09003 * 110.72146 * 96.09473 * 21 20 19 39 39 H 1.08999 * 110.72099 * 219.36676 * 21 20 19 40 40 H 1.08995 * 111.00639 * 153.57621 * 22 21 20 41 41 H 1.09001 * 111.00246 * 277.42869 * 22 21 20 42 42 H 1.09001 * 110.28478 * 85.25993 * 23 19 16 43 43 H 1.08995 * 110.47424 * 323.03373 * 23 19 16 44 44 H 1.07993 * 120.33685 * 179.72627 * 24 15 14 45 45 H 1.07993 * 119.57031 * 180.25184 * 25 24 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0465 -1.4001 5 1 1.4465 2.6527 0.7001 6 1 3.5467 1.4402 0.7000 7 6 2.0046 -1.1940 -0.0005 8 1 1.4646 -2.1293 -0.0005 9 6 3.5115 -1.1940 0.0000 10 6 4.0216 -2.6365 -0.0014 11 6 5.5516 -2.6364 -0.0014 12 7 6.0399 -4.0176 -0.0022 13 6 7.4066 -4.2716 -0.0029 14 6 8.3052 -3.2094 -0.0023 15 6 9.6622 -3.4765 -0.0025 16 16 10.8385 -2.1647 -0.0026 17 8 10.1759 -1.0316 -0.5469 18 8 12.0367 -2.7003 -0.5471 19 7 11.1660 -1.7998 1.5792 20 6 12.2248 -2.4086 2.3975 21 6 12.1716 -1.7446 3.7896 22 6 11.4565 -0.3974 3.5049 23 6 10.4464 -0.8079 2.4045 24 6 10.0768 -4.8020 -0.0085 25 6 9.1301 -5.8065 -0.0032 26 7 7.8415 -5.5221 -0.0030 27 1 -0.4851 0.8401 0.0004 28 1 3.8745 -0.6806 0.8904 29 1 3.8751 -0.6796 -0.8895 30 1 3.6585 -3.1493 -0.8921 31 1 3.6579 -3.1512 0.8880 32 1 5.9150 -2.1235 0.8890 33 1 5.9149 -2.1218 -0.8910 34 1 5.4096 -4.7550 -0.0021 35 1 7.9480 -2.1902 -0.0018 36 1 13.1972 -2.2298 1.9384 37 1 12.0508 -3.4805 2.4913 38 1 11.5899 -2.3507 4.4841 39 1 13.1772 -1.5737 4.1740 40 1 10.9402 -0.0338 4.3932 41 1 12.1598 0.3470 3.1315 42 1 9.5609 -1.2596 2.8518 43 1 10.1674 0.0576 1.8036 44 1 11.1292 -5.0443 -0.0132 45 1 9.4482 -6.8386 -0.0037 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000287905383.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:37:17 Heat of formation + Delta-G solvation = -36.692488 kcal Electronic energy + Delta-G solvation = -27001.574792 eV Core-core repulsion = 23145.826771 eV Total energy + Delta-G solvation = -3855.748020 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -40.41326 -38.71080 -37.55448 -36.60603 -36.15518 -33.80738 -32.91003 -31.81802 -31.36713 -29.72773 -29.40611 -26.93958 -24.56033 -23.55070 -22.97383 -22.06179 -21.62805 -20.49612 -19.43168 -18.56385 -17.80227 -17.30944 -16.73385 -16.65237 -16.03194 -15.60494 -15.46889 -15.31387 -14.54422 -14.38502 -14.33969 -14.14151 -14.06486 -13.96608 -13.70308 -13.07790 -12.74598 -12.45644 -12.43480 -12.41638 -12.22641 -12.03472 -11.99727 -11.76041 -11.73147 -11.59258 -11.16041 -11.14644 -11.07259 -10.73412 -10.24375 -10.06462 -9.87425 -9.82204 -9.75235 -9.39405 -9.29108 -8.60262 -7.83873 -6.10475 -4.09891 -0.05118 0.55441 1.09552 2.60176 3.06334 3.27666 3.35403 3.35629 3.37619 3.61048 3.78003 4.10815 4.26743 4.39791 4.46257 4.52246 4.81219 4.85460 4.85609 4.95643 5.03096 5.10164 5.23008 5.25865 5.31770 5.34416 5.40780 5.44117 5.44372 5.46823 5.50149 5.63246 5.66422 5.79567 5.80578 5.97620 6.16863 6.30836 6.39591 6.67305 6.88560 7.14156 7.27517 7.48775 7.70455 7.93886 8.45474 8.93286 9.51097 11.02754 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.011832 B = 0.002877 C = 0.002516 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2365.796798 B = 9731.100039 C =11127.503204 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.902 5.902 2 C 0.067 3.933 3 Si 0.880 3.120 4 H -0.276 1.276 5 H -0.287 1.287 6 H -0.265 1.265 7 C -0.524 4.524 8 H 0.072 0.928 9 C -0.010 4.010 10 C -0.112 4.112 11 C 0.114 3.886 12 N -0.713 5.713 13 C 0.398 3.602 14 C -0.139 4.139 15 C -0.588 4.588 16 S 2.711 3.289 17 O -0.944 6.944 18 O -0.948 6.948 19 N -1.011 6.011 20 C 0.118 3.882 21 C -0.129 4.129 22 C -0.129 4.129 23 C 0.111 3.889 24 C -0.155 4.155 25 C 0.140 3.860 26 N -0.515 5.515 27 H 0.264 0.736 28 H 0.019 0.981 29 H 0.015 0.985 30 H 0.063 0.937 31 H 0.063 0.937 32 H 0.063 0.937 33 H 0.065 0.935 34 H 0.408 0.592 35 H 0.149 0.851 36 H 0.074 0.926 37 H 0.067 0.933 38 H 0.077 0.923 39 H 0.082 0.918 40 H 0.085 0.915 41 H 0.078 0.922 42 H 0.071 0.929 43 H 0.088 0.912 44 H 0.145 0.855 45 H 0.163 0.837 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 28.122 -6.617 7.359 29.813 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.541 5.541 2 C -0.134 4.134 3 Si 0.707 3.293 4 H -0.202 1.202 5 H -0.213 1.213 6 H -0.189 1.189 7 C -0.562 4.562 8 H 0.090 0.910 9 C -0.048 4.048 10 C -0.150 4.150 11 C -0.009 4.009 12 N -0.344 5.344 13 C 0.159 3.841 14 C -0.166 4.166 15 C -0.682 4.682 16 S 2.801 3.199 17 O -0.935 6.935 18 O -0.939 6.939 19 N -0.851 5.851 20 C -0.007 4.007 21 C -0.168 4.168 22 C -0.168 4.168 23 C -0.013 4.013 24 C -0.180 4.180 25 C -0.019 4.019 26 N -0.232 5.232 27 H 0.074 0.926 28 H 0.037 0.963 29 H 0.034 0.966 30 H 0.082 0.918 31 H 0.082 0.918 32 H 0.081 0.919 33 H 0.083 0.917 34 H 0.244 0.756 35 H 0.167 0.833 36 H 0.092 0.908 37 H 0.085 0.915 38 H 0.095 0.905 39 H 0.101 0.899 40 H 0.104 0.896 41 H 0.096 0.904 42 H 0.089 0.911 43 H 0.106 0.894 44 H 0.163 0.837 45 H 0.180 0.820 Dipole moment (debyes) X Y Z Total from point charges 27.583 -6.580 6.532 29.100 hybrid contribution 0.067 0.592 0.226 0.637 sum 27.651 -5.987 6.758 29.087 Atomic orbital electron populations 1.69907 1.06348 1.27025 1.50778 1.25031 0.94749 0.99250 0.94410 0.86778 0.80334 0.83516 0.78662 1.20166 1.21318 1.18917 1.21072 0.89224 0.94568 1.51333 0.90996 1.19506 0.97451 0.91178 0.96687 1.21685 0.89913 1.01242 1.02161 1.21858 0.97329 0.80403 1.01351 1.44902 1.01856 1.09430 1.78209 1.18497 0.86306 0.88829 0.90443 1.21174 0.91302 1.00571 1.03559 1.31337 1.11002 1.15198 1.10662 1.01538 0.73517 0.73527 0.71292 1.93615 1.76336 1.48325 1.75179 1.93582 1.44372 1.80552 1.75354 1.58691 1.44326 1.51784 1.30275 1.21761 0.90387 0.97221 0.91341 1.22640 1.01801 0.96532 0.95814 1.22763 0.98206 0.97366 0.98474 1.22208 0.95090 0.91385 0.92660 1.21450 1.01537 0.91389 1.03583 1.22528 0.86835 0.99717 0.92818 1.67239 1.18379 1.20195 1.17434 0.92628 0.96272 0.96645 0.91837 0.91849 0.91887 0.91677 0.75574 0.83332 0.90764 0.91469 0.90451 0.89934 0.89617 0.90369 0.91112 0.89408 0.83744 0.81990 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.48 13.96 55.43 0.77 -26.71 16 2 C 0.07 1.92 5.47 -17.82 -0.10 1.83 16 3 Si 0.88 21.27 27.47 -169.99 -4.67 16.60 16 4 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 5 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 6 H -0.26 -6.06 6.54 56.52 0.37 -5.69 16 7 C -0.52 -14.53 9.66 -34.44 -0.33 -14.86 16 8 H 0.07 2.14 7.99 -52.49 -0.42 1.73 16 9 C -0.01 -0.23 4.04 -27.89 -0.11 -0.34 16 10 C -0.11 -2.02 5.27 -26.73 -0.14 -2.16 16 11 C 0.11 1.70 4.89 -4.04 -0.02 1.68 16 12 N -0.71 -9.97 5.73 -60.42 -0.35 -10.32 16 13 C 0.40 5.62 7.65 -155.03 -1.19 4.43 16 14 C -0.14 -1.85 8.82 -39.23 -0.35 -2.19 16 15 C -0.59 -6.97 6.01 -39.32 -0.24 -7.21 16 16 S 2.71 30.89 5.97 -107.50 -0.64 30.25 16 17 O -0.94 -13.44 16.72 -57.17 -0.96 -14.40 16 18 O -0.95 -12.27 16.96 -57.17 -0.97 -13.24 16 19 N -1.01 -8.77 3.71 -111.19 -0.41 -9.18 16 20 C 0.12 0.76 6.98 -3.06 -0.02 0.74 16 21 C -0.13 -0.60 6.95 -24.90 -0.17 -0.77 16 22 C -0.13 -0.68 7.09 -24.58 -0.17 -0.86 16 23 C 0.11 0.84 7.12 -2.36 -0.02 0.82 16 24 C -0.16 -1.63 9.61 -39.42 -0.38 -2.01 16 25 C 0.14 1.51 11.17 -17.57 -0.20 1.32 16 26 N -0.51 -6.97 10.39 -12.44 -0.13 -7.10 16 27 H 0.26 7.52 8.31 -40.82 -0.34 7.18 16 28 H 0.02 0.43 7.20 -51.93 -0.37 0.05 16 29 H 0.02 0.34 7.57 -51.93 -0.39 -0.05 16 30 H 0.06 1.15 8.14 -51.93 -0.42 0.73 16 31 H 0.06 1.13 8.14 -51.93 -0.42 0.71 16 32 H 0.06 0.89 7.93 -51.93 -0.41 0.48 16 33 H 0.06 0.96 7.93 -51.93 -0.41 0.55 16 34 H 0.41 5.41 8.60 -40.82 -0.35 5.06 16 35 H 0.15 1.91 6.36 -52.48 -0.33 1.58 16 36 H 0.07 0.46 8.14 -51.93 -0.42 0.03 16 37 H 0.07 0.37 8.14 -51.93 -0.42 -0.06 16 38 H 0.08 0.33 8.14 -51.93 -0.42 -0.10 16 39 H 0.08 0.27 8.14 -51.93 -0.42 -0.15 16 40 H 0.09 0.35 8.14 -51.93 -0.42 -0.07 16 41 H 0.08 0.39 8.14 -51.93 -0.42 -0.03 16 42 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 43 H 0.09 0.70 7.80 -51.93 -0.41 0.29 16 44 H 0.14 1.17 7.71 -52.49 -0.40 0.77 16 45 H 0.16 1.17 8.06 -52.49 -0.42 0.74 16 LS Contribution 381.11 15.07 5.74 5.74 Total: -1.00 -34.87 381.11 -11.94 -46.80 By element: Atomic # 1 Polarization: 8.04 SS G_CDS: -6.90 Total: 1.14 kcal Atomic # 6 Polarization: -16.16 SS G_CDS: -3.43 Total: -19.59 kcal Atomic # 7 Polarization: -53.19 SS G_CDS: -0.11 Total: -53.31 kcal Atomic # 8 Polarization: -25.71 SS G_CDS: -1.93 Total: -27.64 kcal Atomic # 14 Polarization: 21.27 SS G_CDS: -4.67 Total: 16.60 kcal Atomic # 16 Polarization: 30.89 SS G_CDS: -0.64 Total: 30.25 kcal Total LS contribution 5.74 Total: 5.74 kcal Total: -34.87 -11.94 -46.80 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000287905383.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.112 kcal (2) G-P(sol) polarization free energy of solvation -34.867 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.755 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.938 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.805 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.692 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds