Wall clock time and date at job start Tue Mar 31 2020 22:37:17
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.31507 * 1
3 3 Si 1.86807 * 120.00060 * 2 1
4 4 H 1.48505 * 109.47028 * 270.00230 * 3 2 1
5 5 H 1.48503 * 109.46757 * 30.00191 * 3 2 1
6 6 H 1.48499 * 109.47226 * 149.99981 * 3 2 1
7 7 C 1.37879 * 120.00470 * 180.02562 * 2 1 3
8 8 H 1.07996 * 119.99489 * 359.97438 * 7 2 1
9 9 C 1.50696 * 120.00358 * 180.02562 * 7 2 1
10 10 C 1.52999 * 109.47151 * 180.02562 * 9 7 2
11 11 C 1.53002 * 109.47112 * 179.97438 * 10 9 7
12 12 N 1.46498 * 109.47074 * 179.97438 * 11 10 9
13 13 C 1.39006 * 120.00198 * 179.97438 * 12 11 10
14 14 C 1.39132 * 119.70145 * 0.02562 * 13 12 11
15 15 C 1.38301 * 119.09623 * 179.97438 * 14 13 12
16 16 S 1.76202 * 120.74912 * 179.97438 * 15 14 13
17 17 O 1.42105 * 106.39927 * 336.45629 * 16 15 14
18 18 O 1.42097 * 106.39908 * 203.53712 * 16 15 14
19 19 N 1.65602 * 107.21989 * 89.99684 * 16 15 14
20 20 C 1.47020 * 125.64698 * 90.00001 * 19 16 15
21 21 C 1.54324 * 107.39983 * 178.98108 * 20 19 16
22 22 C 1.55154 * 102.94319 * 337.73017 * 21 20 19
23 23 C 1.47739 * 125.81746 * 269.89490 * 19 16 15
24 24 C 1.38881 * 118.50561 * 0.24624 * 15 14 13
25 25 C 1.38033 * 119.32633 * 359.48490 * 24 15 14
26 26 N 1.31970 * 120.85418 * 0.52824 * 25 24 15
27 27 H 0.97004 * 120.00323 * 359.97438 * 1 2 3
28 28 H 1.08999 * 109.47380 * 59.99295 * 9 7 2
29 29 H 1.09003 * 109.46853 * 299.99567 * 9 7 2
30 30 H 1.09003 * 109.46873 * 59.99508 * 10 9 7
31 31 H 1.09003 * 109.46868 * 299.99532 * 10 9 7
32 32 H 1.08994 * 109.47365 * 59.99865 * 11 10 9
33 33 H 1.09003 * 109.47084 * 299.99659 * 11 10 9
34 34 H 0.97004 * 120.00278 * 359.97438 * 12 11 10
35 35 H 1.08004 * 120.45500 * 359.97438 * 14 13 12
36 36 H 1.09002 * 109.88367 * 59.48607 * 20 19 16
37 37 H 1.09000 * 109.88319 * 298.47226 * 20 19 16
38 38 H 1.09003 * 110.72146 * 96.09473 * 21 20 19
39 39 H 1.08999 * 110.72099 * 219.36676 * 21 20 19
40 40 H 1.08995 * 111.00639 * 153.57621 * 22 21 20
41 41 H 1.09001 * 111.00246 * 277.42869 * 22 21 20
42 42 H 1.09001 * 110.28478 * 85.25993 * 23 19 16
43 43 H 1.08995 * 110.47424 * 323.03373 * 23 19 16
44 44 H 1.07993 * 120.33685 * 179.72627 * 24 15 14
45 45 H 1.07993 * 119.57031 * 180.25184 * 25 24 15
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3151 0.0000 0.0000
3 14 2.2491 1.6178 0.0000
4 1 2.4966 2.0465 -1.4001
5 1 1.4465 2.6527 0.7001
6 1 3.5467 1.4402 0.7000
7 6 2.0046 -1.1940 -0.0005
8 1 1.4646 -2.1293 -0.0005
9 6 3.5115 -1.1940 0.0000
10 6 4.0216 -2.6365 -0.0014
11 6 5.5516 -2.6364 -0.0014
12 7 6.0399 -4.0176 -0.0022
13 6 7.4066 -4.2716 -0.0029
14 6 8.3052 -3.2094 -0.0023
15 6 9.6622 -3.4765 -0.0025
16 16 10.8385 -2.1647 -0.0026
17 8 10.1759 -1.0316 -0.5469
18 8 12.0367 -2.7003 -0.5471
19 7 11.1660 -1.7998 1.5792
20 6 12.2248 -2.4086 2.3975
21 6 12.1716 -1.7446 3.7896
22 6 11.4565 -0.3974 3.5049
23 6 10.4464 -0.8079 2.4045
24 6 10.0768 -4.8020 -0.0085
25 6 9.1301 -5.8065 -0.0032
26 7 7.8415 -5.5221 -0.0030
27 1 -0.4851 0.8401 0.0004
28 1 3.8745 -0.6806 0.8904
29 1 3.8751 -0.6796 -0.8895
30 1 3.6585 -3.1493 -0.8921
31 1 3.6579 -3.1512 0.8880
32 1 5.9150 -2.1235 0.8890
33 1 5.9149 -2.1218 -0.8910
34 1 5.4096 -4.7550 -0.0021
35 1 7.9480 -2.1902 -0.0018
36 1 13.1972 -2.2298 1.9384
37 1 12.0508 -3.4805 2.4913
38 1 11.5899 -2.3507 4.4841
39 1 13.1772 -1.5737 4.1740
40 1 10.9402 -0.0338 4.3932
41 1 12.1598 0.3470 3.1315
42 1 9.5609 -1.2596 2.8518
43 1 10.1674 0.0576 1.8036
44 1 11.1292 -5.0443 -0.0132
45 1 9.4482 -6.8386 -0.0037
RHF calculation, no. of doubly occupied orbitals= 61
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990)
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000287905383.mol2 45
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 22:37:17
Heat of formation + Delta-G solvation = -36.692488 kcal
Electronic energy + Delta-G solvation = -27001.574792 eV
Core-core repulsion = 23145.826771 eV
Total energy + Delta-G solvation = -3855.748020 eV
No. of doubly occupied orbitals = 61
Molecular weight
(most abundant/longest-lived isotopes) = 339.140 amu
Computer time = 0.72 seconds
Orbital eigenvalues (eV)
-40.41326 -38.71080 -37.55448 -36.60603 -36.15518 -33.80738 -32.91003 -31.81802
-31.36713 -29.72773 -29.40611 -26.93958 -24.56033 -23.55070 -22.97383 -22.06179
-21.62805 -20.49612 -19.43168 -18.56385 -17.80227 -17.30944 -16.73385 -16.65237
-16.03194 -15.60494 -15.46889 -15.31387 -14.54422 -14.38502 -14.33969 -14.14151
-14.06486 -13.96608 -13.70308 -13.07790 -12.74598 -12.45644 -12.43480 -12.41638
-12.22641 -12.03472 -11.99727 -11.76041 -11.73147 -11.59258 -11.16041 -11.14644
-11.07259 -10.73412 -10.24375 -10.06462 -9.87425 -9.82204 -9.75235 -9.39405
-9.29108 -8.60262 -7.83873 -6.10475 -4.09891 -0.05118 0.55441 1.09552
2.60176 3.06334 3.27666 3.35403 3.35629 3.37619 3.61048 3.78003
4.10815 4.26743 4.39791 4.46257 4.52246 4.81219 4.85460 4.85609
4.95643 5.03096 5.10164 5.23008 5.25865 5.31770 5.34416 5.40780
5.44117 5.44372 5.46823 5.50149 5.63246 5.66422 5.79567 5.80578
5.97620 6.16863 6.30836 6.39591 6.67305 6.88560 7.14156 7.27517
7.48775 7.70455 7.93886 8.45474 8.93286 9.51097 11.02754
Molecular weight = 339.14amu
Principal moments of inertia in cm(-1)
A = 0.011832 B = 0.002877 C = 0.002516
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2365.796798 B = 9731.100039 C =11127.503204
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.902 5.902
2 C 0.067 3.933
3 Si 0.880 3.120
4 H -0.276 1.276
5 H -0.287 1.287
6 H -0.265 1.265
7 C -0.524 4.524
8 H 0.072 0.928
9 C -0.010 4.010
10 C -0.112 4.112
11 C 0.114 3.886
12 N -0.713 5.713
13 C 0.398 3.602
14 C -0.139 4.139
15 C -0.588 4.588
16 S 2.711 3.289
17 O -0.944 6.944
18 O -0.948 6.948
19 N -1.011 6.011
20 C 0.118 3.882
21 C -0.129 4.129
22 C -0.129 4.129
23 C 0.111 3.889
24 C -0.155 4.155
25 C 0.140 3.860
26 N -0.515 5.515
27 H 0.264 0.736
28 H 0.019 0.981
29 H 0.015 0.985
30 H 0.063 0.937
31 H 0.063 0.937
32 H 0.063 0.937
33 H 0.065 0.935
34 H 0.408 0.592
35 H 0.149 0.851
36 H 0.074 0.926
37 H 0.067 0.933
38 H 0.077 0.923
39 H 0.082 0.918
40 H 0.085 0.915
41 H 0.078 0.922
42 H 0.071 0.929
43 H 0.088 0.912
44 H 0.145 0.855
45 H 0.163 0.837
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 28.122 -6.617 7.359 29.813
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.541 5.541
2 C -0.134 4.134
3 Si 0.707 3.293
4 H -0.202 1.202
5 H -0.213 1.213
6 H -0.189 1.189
7 C -0.562 4.562
8 H 0.090 0.910
9 C -0.048 4.048
10 C -0.150 4.150
11 C -0.009 4.009
12 N -0.344 5.344
13 C 0.159 3.841
14 C -0.166 4.166
15 C -0.682 4.682
16 S 2.801 3.199
17 O -0.935 6.935
18 O -0.939 6.939
19 N -0.851 5.851
20 C -0.007 4.007
21 C -0.168 4.168
22 C -0.168 4.168
23 C -0.013 4.013
24 C -0.180 4.180
25 C -0.019 4.019
26 N -0.232 5.232
27 H 0.074 0.926
28 H 0.037 0.963
29 H 0.034 0.966
30 H 0.082 0.918
31 H 0.082 0.918
32 H 0.081 0.919
33 H 0.083 0.917
34 H 0.244 0.756
35 H 0.167 0.833
36 H 0.092 0.908
37 H 0.085 0.915
38 H 0.095 0.905
39 H 0.101 0.899
40 H 0.104 0.896
41 H 0.096 0.904
42 H 0.089 0.911
43 H 0.106 0.894
44 H 0.163 0.837
45 H 0.180 0.820
Dipole moment (debyes) X Y Z Total
from point charges 27.583 -6.580 6.532 29.100
hybrid contribution 0.067 0.592 0.226 0.637
sum 27.651 -5.987 6.758 29.087
Atomic orbital electron populations
1.69907 1.06348 1.27025 1.50778 1.25031 0.94749 0.99250 0.94410
0.86778 0.80334 0.83516 0.78662 1.20166 1.21318 1.18917 1.21072
0.89224 0.94568 1.51333 0.90996 1.19506 0.97451 0.91178 0.96687
1.21685 0.89913 1.01242 1.02161 1.21858 0.97329 0.80403 1.01351
1.44902 1.01856 1.09430 1.78209 1.18497 0.86306 0.88829 0.90443
1.21174 0.91302 1.00571 1.03559 1.31337 1.11002 1.15198 1.10662
1.01538 0.73517 0.73527 0.71292 1.93615 1.76336 1.48325 1.75179
1.93582 1.44372 1.80552 1.75354 1.58691 1.44326 1.51784 1.30275
1.21761 0.90387 0.97221 0.91341 1.22640 1.01801 0.96532 0.95814
1.22763 0.98206 0.97366 0.98474 1.22208 0.95090 0.91385 0.92660
1.21450 1.01537 0.91389 1.03583 1.22528 0.86835 0.99717 0.92818
1.67239 1.18379 1.20195 1.17434 0.92628 0.96272 0.96645 0.91837
0.91849 0.91887 0.91677 0.75574 0.83332 0.90764 0.91469 0.90451
0.89934 0.89617 0.90369 0.91112 0.89408 0.83744 0.81990
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 16.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.90 -27.48 13.96 55.43 0.77 -26.71 16
2 C 0.07 1.92 5.47 -17.82 -0.10 1.83 16
3 Si 0.88 21.27 27.47 -169.99 -4.67 16.60 16
4 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16
5 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16
6 H -0.26 -6.06 6.54 56.52 0.37 -5.69 16
7 C -0.52 -14.53 9.66 -34.44 -0.33 -14.86 16
8 H 0.07 2.14 7.99 -52.49 -0.42 1.73 16
9 C -0.01 -0.23 4.04 -27.89 -0.11 -0.34 16
10 C -0.11 -2.02 5.27 -26.73 -0.14 -2.16 16
11 C 0.11 1.70 4.89 -4.04 -0.02 1.68 16
12 N -0.71 -9.97 5.73 -60.42 -0.35 -10.32 16
13 C 0.40 5.62 7.65 -155.03 -1.19 4.43 16
14 C -0.14 -1.85 8.82 -39.23 -0.35 -2.19 16
15 C -0.59 -6.97 6.01 -39.32 -0.24 -7.21 16
16 S 2.71 30.89 5.97 -107.50 -0.64 30.25 16
17 O -0.94 -13.44 16.72 -57.17 -0.96 -14.40 16
18 O -0.95 -12.27 16.96 -57.17 -0.97 -13.24 16
19 N -1.01 -8.77 3.71 -111.19 -0.41 -9.18 16
20 C 0.12 0.76 6.98 -3.06 -0.02 0.74 16
21 C -0.13 -0.60 6.95 -24.90 -0.17 -0.77 16
22 C -0.13 -0.68 7.09 -24.58 -0.17 -0.86 16
23 C 0.11 0.84 7.12 -2.36 -0.02 0.82 16
24 C -0.16 -1.63 9.61 -39.42 -0.38 -2.01 16
25 C 0.14 1.51 11.17 -17.57 -0.20 1.32 16
26 N -0.51 -6.97 10.39 -12.44 -0.13 -7.10 16
27 H 0.26 7.52 8.31 -40.82 -0.34 7.18 16
28 H 0.02 0.43 7.20 -51.93 -0.37 0.05 16
29 H 0.02 0.34 7.57 -51.93 -0.39 -0.05 16
30 H 0.06 1.15 8.14 -51.93 -0.42 0.73 16
31 H 0.06 1.13 8.14 -51.93 -0.42 0.71 16
32 H 0.06 0.89 7.93 -51.93 -0.41 0.48 16
33 H 0.06 0.96 7.93 -51.93 -0.41 0.55 16
34 H 0.41 5.41 8.60 -40.82 -0.35 5.06 16
35 H 0.15 1.91 6.36 -52.48 -0.33 1.58 16
36 H 0.07 0.46 8.14 -51.93 -0.42 0.03 16
37 H 0.07 0.37 8.14 -51.93 -0.42 -0.06 16
38 H 0.08 0.33 8.14 -51.93 -0.42 -0.10 16
39 H 0.08 0.27 8.14 -51.93 -0.42 -0.15 16
40 H 0.09 0.35 8.14 -51.93 -0.42 -0.07 16
41 H 0.08 0.39 8.14 -51.93 -0.42 -0.03 16
42 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16
43 H 0.09 0.70 7.80 -51.93 -0.41 0.29 16
44 H 0.14 1.17 7.71 -52.49 -0.40 0.77 16
45 H 0.16 1.17 8.06 -52.49 -0.42 0.74 16
LS Contribution 381.11 15.07 5.74 5.74
Total: -1.00 -34.87 381.11 -11.94 -46.80
By element:
Atomic # 1 Polarization: 8.04 SS G_CDS: -6.90 Total: 1.14 kcal
Atomic # 6 Polarization: -16.16 SS G_CDS: -3.43 Total: -19.59 kcal
Atomic # 7 Polarization: -53.19 SS G_CDS: -0.11 Total: -53.31 kcal
Atomic # 8 Polarization: -25.71 SS G_CDS: -1.93 Total: -27.64 kcal
Atomic # 14 Polarization: 21.27 SS G_CDS: -4.67 Total: 16.60 kcal
Atomic # 16 Polarization: 30.89 SS G_CDS: -0.64 Total: 30.25 kcal
Total LS contribution 5.74 Total: 5.74 kcal
Total: -34.87 -11.94 -46.80 kcal
The number of atoms in the molecule is 45
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000287905383.mol2 45
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 10.112 kcal
(2) G-P(sol) polarization free energy of solvation -34.867 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.755 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.938 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.805 kcal
(6) G-S(sol) free energy of system = (1) + (5) -36.692 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.72 seconds