Wall clock time and date at job start Tue Mar 31 2020 22:37:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31507 * 1 3 3 Si 1.86807 * 120.00060 * 2 1 4 4 H 1.48505 * 109.47028 * 270.00230 * 3 2 1 5 5 H 1.48503 * 109.46757 * 30.00191 * 3 2 1 6 6 H 1.48499 * 109.47226 * 149.99981 * 3 2 1 7 7 C 1.37879 * 120.00470 * 180.02562 * 2 1 3 8 8 H 1.07996 * 119.99489 * 359.97438 * 7 2 1 9 9 C 1.50696 * 120.00358 * 180.02562 * 7 2 1 10 10 C 1.52999 * 109.47151 * 180.02562 * 9 7 2 11 11 C 1.53002 * 109.47112 * 179.97438 * 10 9 7 12 12 N 1.46498 * 109.47074 * 179.97438 * 11 10 9 13 13 C 1.39006 * 120.00198 * 179.97438 * 12 11 10 14 14 C 1.39132 * 119.70145 * 0.02562 * 13 12 11 15 15 C 1.38301 * 119.09623 * 179.97438 * 14 13 12 16 16 S 1.76202 * 120.74912 * 179.97438 * 15 14 13 17 17 O 1.42105 * 106.39927 * 336.45629 * 16 15 14 18 18 O 1.42097 * 106.39908 * 203.53712 * 16 15 14 19 19 N 1.65602 * 107.21989 * 89.99684 * 16 15 14 20 20 C 1.47020 * 125.64698 * 90.00001 * 19 16 15 21 21 C 1.54324 * 107.39983 * 178.98108 * 20 19 16 22 22 C 1.55154 * 102.94319 * 337.73017 * 21 20 19 23 23 C 1.47739 * 125.81746 * 269.89490 * 19 16 15 24 24 C 1.38881 * 118.50561 * 0.24624 * 15 14 13 25 25 C 1.38033 * 119.32633 * 359.48490 * 24 15 14 26 26 N 1.31970 * 120.85418 * 0.52824 * 25 24 15 27 27 H 0.97004 * 120.00323 * 359.97438 * 1 2 3 28 28 H 1.08999 * 109.47380 * 59.99295 * 9 7 2 29 29 H 1.09003 * 109.46853 * 299.99567 * 9 7 2 30 30 H 1.09003 * 109.46873 * 59.99508 * 10 9 7 31 31 H 1.09003 * 109.46868 * 299.99532 * 10 9 7 32 32 H 1.08994 * 109.47365 * 59.99865 * 11 10 9 33 33 H 1.09003 * 109.47084 * 299.99659 * 11 10 9 34 34 H 0.97004 * 120.00278 * 359.97438 * 12 11 10 35 35 H 1.08004 * 120.45500 * 359.97438 * 14 13 12 36 36 H 1.09002 * 109.88367 * 59.48607 * 20 19 16 37 37 H 1.09000 * 109.88319 * 298.47226 * 20 19 16 38 38 H 1.09003 * 110.72146 * 96.09473 * 21 20 19 39 39 H 1.08999 * 110.72099 * 219.36676 * 21 20 19 40 40 H 1.08995 * 111.00639 * 153.57621 * 22 21 20 41 41 H 1.09001 * 111.00246 * 277.42869 * 22 21 20 42 42 H 1.09001 * 110.28478 * 85.25993 * 23 19 16 43 43 H 1.08995 * 110.47424 * 323.03373 * 23 19 16 44 44 H 1.07993 * 120.33685 * 179.72627 * 24 15 14 45 45 H 1.07993 * 119.57031 * 180.25184 * 25 24 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0465 -1.4001 5 1 1.4465 2.6527 0.7001 6 1 3.5467 1.4402 0.7000 7 6 2.0046 -1.1940 -0.0005 8 1 1.4646 -2.1293 -0.0005 9 6 3.5115 -1.1940 0.0000 10 6 4.0216 -2.6365 -0.0014 11 6 5.5516 -2.6364 -0.0014 12 7 6.0399 -4.0176 -0.0022 13 6 7.4066 -4.2716 -0.0029 14 6 8.3052 -3.2094 -0.0023 15 6 9.6622 -3.4765 -0.0025 16 16 10.8385 -2.1647 -0.0026 17 8 10.1759 -1.0316 -0.5469 18 8 12.0367 -2.7003 -0.5471 19 7 11.1660 -1.7998 1.5792 20 6 12.2248 -2.4086 2.3975 21 6 12.1716 -1.7446 3.7896 22 6 11.4565 -0.3974 3.5049 23 6 10.4464 -0.8079 2.4045 24 6 10.0768 -4.8020 -0.0085 25 6 9.1301 -5.8065 -0.0032 26 7 7.8415 -5.5221 -0.0030 27 1 -0.4851 0.8401 0.0004 28 1 3.8745 -0.6806 0.8904 29 1 3.8751 -0.6796 -0.8895 30 1 3.6585 -3.1493 -0.8921 31 1 3.6579 -3.1512 0.8880 32 1 5.9150 -2.1235 0.8890 33 1 5.9149 -2.1218 -0.8910 34 1 5.4096 -4.7550 -0.0021 35 1 7.9480 -2.1902 -0.0018 36 1 13.1972 -2.2298 1.9384 37 1 12.0508 -3.4805 2.4913 38 1 11.5899 -2.3507 4.4841 39 1 13.1772 -1.5737 4.1740 40 1 10.9402 -0.0338 4.3932 41 1 12.1598 0.3470 3.1315 42 1 9.5609 -1.2596 2.8518 43 1 10.1674 0.0576 1.8036 44 1 11.1292 -5.0443 -0.0132 45 1 9.4482 -6.8386 -0.0037 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000287905383.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:37:17 Heat of formation + Delta-G solvation = -61.407127 kcal Electronic energy + Delta-G solvation = -27002.646499 eV Core-core repulsion = 23145.826771 eV Total energy + Delta-G solvation = -3856.819727 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -41.35803 -39.22666 -38.52258 -37.80444 -37.12913 -35.52003 -33.99252 -33.48938 -31.89605 -30.93104 -29.89408 -28.49860 -25.60185 -24.84991 -23.58186 -23.25699 -22.08172 -22.05762 -20.31851 -19.40610 -18.98727 -18.63539 -18.10667 -17.31381 -16.91837 -16.65515 -16.55955 -16.31869 -16.21858 -15.37235 -15.35654 -15.20005 -14.87253 -14.74765 -14.67035 -14.22901 -13.90081 -13.76117 -13.56835 -13.41046 -13.40041 -13.18904 -12.83076 -12.78971 -12.68664 -12.62475 -12.13680 -12.04333 -11.94299 -11.78068 -11.73886 -11.55961 -11.51502 -11.35337 -11.03036 -10.77081 -10.70835 -10.04692 -8.84175 -8.30006 -6.34854 -0.90882 -0.37268 0.18227 1.38488 1.39045 1.51003 1.81976 2.01860 2.36369 2.46956 2.70618 2.99375 3.05934 3.53546 3.61904 3.78259 3.90741 3.95069 4.04904 4.11302 4.14046 4.14927 4.36895 4.38106 4.48491 4.57942 4.60604 4.61447 4.78158 4.81279 4.83792 4.89829 4.99658 5.00586 5.02274 5.06853 5.19378 5.36187 5.38174 5.45090 5.45992 5.53281 5.63497 5.83427 6.26344 6.47054 6.73660 6.96632 7.30106 8.86763 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.011832 B = 0.002877 C = 0.002516 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2365.796798 B = 9731.100039 C =11127.503204 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.953 5.953 2 C 0.003 3.997 3 Si 0.950 3.050 4 H -0.269 1.269 5 H -0.285 1.285 6 H -0.240 1.240 7 C -0.534 4.534 8 H 0.032 0.968 9 C -0.010 4.010 10 C -0.101 4.101 11 C 0.128 3.872 12 N -0.717 5.717 13 C 0.381 3.619 14 C -0.157 4.157 15 C -0.591 4.591 16 S 2.727 3.273 17 O -0.978 6.978 18 O -0.966 6.966 19 N -1.009 6.009 20 C 0.105 3.895 21 C -0.123 4.123 22 C -0.126 4.126 23 C 0.100 3.900 24 C -0.148 4.148 25 C 0.139 3.861 26 N -0.532 5.532 27 H 0.266 0.734 28 H 0.029 0.971 29 H 0.023 0.977 30 H 0.056 0.944 31 H 0.060 0.940 32 H 0.074 0.926 33 H 0.067 0.933 34 H 0.409 0.591 35 H 0.147 0.853 36 H 0.076 0.924 37 H 0.079 0.921 38 H 0.084 0.916 39 H 0.100 0.900 40 H 0.100 0.900 41 H 0.079 0.921 42 H 0.075 0.925 43 H 0.078 0.922 44 H 0.172 0.828 45 H 0.200 0.800 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 31.384 -6.637 8.488 33.182 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.594 5.594 2 C -0.194 4.194 3 Si 0.773 3.227 4 H -0.194 1.194 5 H -0.211 1.211 6 H -0.163 1.163 7 C -0.572 4.572 8 H 0.050 0.950 9 C -0.048 4.048 10 C -0.139 4.139 11 C 0.004 3.996 12 N -0.349 5.349 13 C 0.144 3.856 14 C -0.184 4.184 15 C -0.685 4.685 16 S 2.818 3.182 17 O -0.968 6.968 18 O -0.956 6.956 19 N -0.850 5.850 20 C -0.019 4.019 21 C -0.162 4.162 22 C -0.165 4.165 23 C -0.024 4.024 24 C -0.171 4.171 25 C -0.020 4.020 26 N -0.250 5.250 27 H 0.075 0.925 28 H 0.047 0.953 29 H 0.041 0.959 30 H 0.075 0.925 31 H 0.079 0.921 32 H 0.092 0.908 33 H 0.085 0.915 34 H 0.245 0.755 35 H 0.164 0.836 36 H 0.095 0.905 37 H 0.097 0.903 38 H 0.103 0.897 39 H 0.118 0.882 40 H 0.118 0.882 41 H 0.098 0.902 42 H 0.093 0.907 43 H 0.096 0.904 44 H 0.189 0.811 45 H 0.217 0.783 Dipole moment (debyes) X Y Z Total from point charges 30.875 -6.623 7.658 32.493 hybrid contribution -0.905 0.451 -0.098 1.016 sum 29.970 -6.172 7.561 31.519 Atomic orbital electron populations 1.70068 1.08429 1.28221 1.52639 1.26042 0.95608 1.03669 0.94071 0.85666 0.79746 0.78080 0.79232 1.19383 1.21082 1.16295 1.21472 0.92135 0.93110 1.50499 0.95000 1.19458 0.93887 0.94212 0.97242 1.21450 0.92308 0.98370 1.01797 1.21566 0.94689 0.81324 1.02031 1.44701 1.02207 1.08842 1.79129 1.18586 0.86136 0.89419 0.91466 1.21193 0.91913 1.00375 1.04955 1.31446 1.10506 1.16072 1.10447 1.00826 0.72781 0.72803 0.71777 1.93568 1.76915 1.49695 1.76631 1.93551 1.44873 1.80736 1.76440 1.58508 1.44870 1.52015 1.29630 1.22068 0.89713 0.98096 0.92032 1.22664 1.02892 0.95860 0.94740 1.22793 0.97769 0.97848 0.98087 1.22417 0.96042 0.90889 0.93089 1.21866 1.02985 0.90694 1.01574 1.23210 0.85882 1.01609 0.91323 1.67272 1.19891 1.19984 1.17832 0.92492 0.95304 0.95877 0.92488 0.92108 0.90821 0.91484 0.75462 0.83554 0.90546 0.90295 0.89718 0.88176 0.88155 0.90204 0.90659 0.90388 0.81059 0.78291 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -59.70 13.96 21.45 0.30 -59.40 16 2 C 0.00 0.16 5.47 84.66 0.46 0.62 16 3 Si 0.95 43.49 27.47 68.60 1.88 45.38 16 4 H -0.27 -11.94 7.11 99.48 0.71 -11.23 16 5 H -0.28 -12.86 7.11 99.48 0.71 -12.16 16 6 H -0.24 -9.94 6.54 99.48 0.65 -9.29 16 7 C -0.53 -30.27 9.66 25.60 0.25 -30.03 16 8 H 0.03 1.99 7.99 -2.91 -0.02 1.97 16 9 C -0.01 -0.44 4.04 29.85 0.12 -0.32 16 10 C -0.10 -3.63 5.27 30.59 0.16 -3.47 16 11 C 0.13 3.70 4.89 86.38 0.42 4.12 16 12 N -0.72 -19.62 5.73 -345.08 -1.98 -21.60 16 13 C 0.38 10.38 7.65 133.06 1.02 11.40 16 14 C -0.16 -4.04 8.82 22.50 0.20 -3.85 16 15 C -0.59 -13.15 6.01 22.44 0.13 -13.01 16 16 S 2.73 59.45 5.97 -56.49 -0.34 59.12 16 17 O -0.98 -27.69 16.72 -128.00 -2.14 -29.83 16 18 O -0.97 -23.69 16.96 -128.00 -2.17 -25.86 16 19 N -1.01 -15.96 3.71 -505.68 -1.88 -17.83 16 20 C 0.11 1.11 6.98 86.73 0.61 1.72 16 21 C -0.12 -0.79 6.95 31.78 0.22 -0.57 16 22 C -0.13 -1.04 7.09 31.98 0.23 -0.81 16 23 C 0.10 1.37 7.12 86.79 0.62 1.99 16 24 C -0.15 -2.71 9.61 22.38 0.21 -2.50 16 25 C 0.14 2.62 11.17 84.62 0.95 3.57 16 26 N -0.53 -13.55 10.39 -193.27 -2.01 -15.56 16 27 H 0.27 15.55 8.31 -92.71 -0.77 14.78 16 28 H 0.03 1.23 7.20 -2.39 -0.02 1.21 16 29 H 0.02 0.99 7.57 -2.39 -0.02 0.97 16 30 H 0.06 2.09 8.14 -2.39 -0.02 2.07 16 31 H 0.06 2.19 8.14 -2.39 -0.02 2.17 16 32 H 0.07 1.97 7.93 -2.39 -0.02 1.96 16 33 H 0.07 1.92 7.93 -2.39 -0.02 1.90 16 34 H 0.41 10.74 8.60 -92.71 -0.80 9.95 16 35 H 0.15 3.71 6.36 -2.91 -0.02 3.69 16 36 H 0.08 0.78 8.14 -2.39 -0.02 0.76 16 37 H 0.08 0.64 8.14 -2.39 -0.02 0.62 16 38 H 0.08 0.45 8.14 -2.39 -0.02 0.43 16 39 H 0.10 0.32 8.14 -2.39 -0.02 0.30 16 40 H 0.10 0.55 8.14 -2.39 -0.02 0.54 16 41 H 0.08 0.64 8.14 -2.39 -0.02 0.62 16 42 H 0.08 0.95 8.14 -2.39 -0.02 0.93 16 43 H 0.08 1.20 7.80 -2.39 -0.02 1.18 16 44 H 0.17 2.18 7.71 -2.91 -0.02 2.15 16 45 H 0.20 2.10 8.06 -2.91 -0.02 2.07 16 Total: -1.00 -76.55 381.11 -2.59 -79.14 By element: Atomic # 1 Polarization: 17.43 SS G_CDS: 0.14 Total: 17.58 kcal Atomic # 6 Polarization: -36.73 SS G_CDS: 5.60 Total: -31.14 kcal Atomic # 7 Polarization: -108.82 SS G_CDS: -5.56 Total: -114.39 kcal Atomic # 8 Polarization: -51.38 SS G_CDS: -4.31 Total: -55.69 kcal Atomic # 14 Polarization: 43.49 SS G_CDS: 1.88 Total: 45.38 kcal Atomic # 16 Polarization: 59.45 SS G_CDS: -0.34 Total: 59.12 kcal Total: -76.55 -2.59 -79.14 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000287905383.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.732 kcal (2) G-P(sol) polarization free energy of solvation -76.553 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.821 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.586 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.139 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.407 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds