Wall clock time and date at job start Tue Mar 31 2020 22:37:17
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.31507 * 1
3 3 Si 1.86807 * 120.00060 * 2 1
4 4 H 1.48505 * 109.47028 * 270.00230 * 3 2 1
5 5 H 1.48503 * 109.46757 * 30.00191 * 3 2 1
6 6 H 1.48499 * 109.47226 * 149.99981 * 3 2 1
7 7 C 1.37879 * 120.00470 * 180.02562 * 2 1 3
8 8 H 1.07996 * 119.99489 * 359.97438 * 7 2 1
9 9 C 1.50696 * 120.00358 * 180.02562 * 7 2 1
10 10 C 1.52999 * 109.47151 * 180.02562 * 9 7 2
11 11 C 1.53002 * 109.47112 * 179.97438 * 10 9 7
12 12 N 1.46498 * 109.47074 * 179.97438 * 11 10 9
13 13 C 1.39006 * 120.00198 * 179.97438 * 12 11 10
14 14 C 1.39132 * 119.70145 * 0.02562 * 13 12 11
15 15 C 1.38301 * 119.09623 * 179.97438 * 14 13 12
16 16 S 1.76202 * 120.74912 * 179.97438 * 15 14 13
17 17 O 1.42105 * 106.39927 * 336.45629 * 16 15 14
18 18 O 1.42097 * 106.39908 * 203.53712 * 16 15 14
19 19 N 1.65602 * 107.21989 * 89.99684 * 16 15 14
20 20 C 1.47020 * 125.64698 * 90.00001 * 19 16 15
21 21 C 1.54324 * 107.39983 * 178.98108 * 20 19 16
22 22 C 1.55154 * 102.94319 * 337.73017 * 21 20 19
23 23 C 1.47739 * 125.81746 * 269.89490 * 19 16 15
24 24 C 1.38881 * 118.50561 * 0.24624 * 15 14 13
25 25 C 1.38033 * 119.32633 * 359.48490 * 24 15 14
26 26 N 1.31970 * 120.85418 * 0.52824 * 25 24 15
27 27 H 0.97004 * 120.00323 * 359.97438 * 1 2 3
28 28 H 1.08999 * 109.47380 * 59.99295 * 9 7 2
29 29 H 1.09003 * 109.46853 * 299.99567 * 9 7 2
30 30 H 1.09003 * 109.46873 * 59.99508 * 10 9 7
31 31 H 1.09003 * 109.46868 * 299.99532 * 10 9 7
32 32 H 1.08994 * 109.47365 * 59.99865 * 11 10 9
33 33 H 1.09003 * 109.47084 * 299.99659 * 11 10 9
34 34 H 0.97004 * 120.00278 * 359.97438 * 12 11 10
35 35 H 1.08004 * 120.45500 * 359.97438 * 14 13 12
36 36 H 1.09002 * 109.88367 * 59.48607 * 20 19 16
37 37 H 1.09000 * 109.88319 * 298.47226 * 20 19 16
38 38 H 1.09003 * 110.72146 * 96.09473 * 21 20 19
39 39 H 1.08999 * 110.72099 * 219.36676 * 21 20 19
40 40 H 1.08995 * 111.00639 * 153.57621 * 22 21 20
41 41 H 1.09001 * 111.00246 * 277.42869 * 22 21 20
42 42 H 1.09001 * 110.28478 * 85.25993 * 23 19 16
43 43 H 1.08995 * 110.47424 * 323.03373 * 23 19 16
44 44 H 1.07993 * 120.33685 * 179.72627 * 24 15 14
45 45 H 1.07993 * 119.57031 * 180.25184 * 25 24 15
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3151 0.0000 0.0000
3 14 2.2491 1.6178 0.0000
4 1 2.4966 2.0465 -1.4001
5 1 1.4465 2.6527 0.7001
6 1 3.5467 1.4402 0.7000
7 6 2.0046 -1.1940 -0.0005
8 1 1.4646 -2.1293 -0.0005
9 6 3.5115 -1.1940 0.0000
10 6 4.0216 -2.6365 -0.0014
11 6 5.5516 -2.6364 -0.0014
12 7 6.0399 -4.0176 -0.0022
13 6 7.4066 -4.2716 -0.0029
14 6 8.3052 -3.2094 -0.0023
15 6 9.6622 -3.4765 -0.0025
16 16 10.8385 -2.1647 -0.0026
17 8 10.1759 -1.0316 -0.5469
18 8 12.0367 -2.7003 -0.5471
19 7 11.1660 -1.7998 1.5792
20 6 12.2248 -2.4086 2.3975
21 6 12.1716 -1.7446 3.7896
22 6 11.4565 -0.3974 3.5049
23 6 10.4464 -0.8079 2.4045
24 6 10.0768 -4.8020 -0.0085
25 6 9.1301 -5.8065 -0.0032
26 7 7.8415 -5.5221 -0.0030
27 1 -0.4851 0.8401 0.0004
28 1 3.8745 -0.6806 0.8904
29 1 3.8751 -0.6796 -0.8895
30 1 3.6585 -3.1493 -0.8921
31 1 3.6579 -3.1512 0.8880
32 1 5.9150 -2.1235 0.8890
33 1 5.9149 -2.1218 -0.8910
34 1 5.4096 -4.7550 -0.0021
35 1 7.9480 -2.1902 -0.0018
36 1 13.1972 -2.2298 1.9384
37 1 12.0508 -3.4805 2.4913
38 1 11.5899 -2.3507 4.4841
39 1 13.1772 -1.5737 4.1740
40 1 10.9402 -0.0338 4.3932
41 1 12.1598 0.3470 3.1315
42 1 9.5609 -1.2596 2.8518
43 1 10.1674 0.0576 1.8036
44 1 11.1292 -5.0443 -0.0132
45 1 9.4482 -6.8386 -0.0037
RHF calculation, no. of doubly occupied orbitals= 61
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990)
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000287905383.mol2 45
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 22:37:17
Heat of formation + Delta-G solvation = -61.407127 kcal
Electronic energy + Delta-G solvation = -27002.646499 eV
Core-core repulsion = 23145.826771 eV
Total energy + Delta-G solvation = -3856.819727 eV
No. of doubly occupied orbitals = 61
Molecular weight
(most abundant/longest-lived isotopes) = 339.140 amu
Computer time = 0.72 seconds
Orbital eigenvalues (eV)
-41.35803 -39.22666 -38.52258 -37.80444 -37.12913 -35.52003 -33.99252 -33.48938
-31.89605 -30.93104 -29.89408 -28.49860 -25.60185 -24.84991 -23.58186 -23.25699
-22.08172 -22.05762 -20.31851 -19.40610 -18.98727 -18.63539 -18.10667 -17.31381
-16.91837 -16.65515 -16.55955 -16.31869 -16.21858 -15.37235 -15.35654 -15.20005
-14.87253 -14.74765 -14.67035 -14.22901 -13.90081 -13.76117 -13.56835 -13.41046
-13.40041 -13.18904 -12.83076 -12.78971 -12.68664 -12.62475 -12.13680 -12.04333
-11.94299 -11.78068 -11.73886 -11.55961 -11.51502 -11.35337 -11.03036 -10.77081
-10.70835 -10.04692 -8.84175 -8.30006 -6.34854 -0.90882 -0.37268 0.18227
1.38488 1.39045 1.51003 1.81976 2.01860 2.36369 2.46956 2.70618
2.99375 3.05934 3.53546 3.61904 3.78259 3.90741 3.95069 4.04904
4.11302 4.14046 4.14927 4.36895 4.38106 4.48491 4.57942 4.60604
4.61447 4.78158 4.81279 4.83792 4.89829 4.99658 5.00586 5.02274
5.06853 5.19378 5.36187 5.38174 5.45090 5.45992 5.53281 5.63497
5.83427 6.26344 6.47054 6.73660 6.96632 7.30106 8.86763
Molecular weight = 339.14amu
Principal moments of inertia in cm(-1)
A = 0.011832 B = 0.002877 C = 0.002516
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2365.796798 B = 9731.100039 C =11127.503204
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.953 5.953
2 C 0.003 3.997
3 Si 0.950 3.050
4 H -0.269 1.269
5 H -0.285 1.285
6 H -0.240 1.240
7 C -0.534 4.534
8 H 0.032 0.968
9 C -0.010 4.010
10 C -0.101 4.101
11 C 0.128 3.872
12 N -0.717 5.717
13 C 0.381 3.619
14 C -0.157 4.157
15 C -0.591 4.591
16 S 2.727 3.273
17 O -0.978 6.978
18 O -0.966 6.966
19 N -1.009 6.009
20 C 0.105 3.895
21 C -0.123 4.123
22 C -0.126 4.126
23 C 0.100 3.900
24 C -0.148 4.148
25 C 0.139 3.861
26 N -0.532 5.532
27 H 0.266 0.734
28 H 0.029 0.971
29 H 0.023 0.977
30 H 0.056 0.944
31 H 0.060 0.940
32 H 0.074 0.926
33 H 0.067 0.933
34 H 0.409 0.591
35 H 0.147 0.853
36 H 0.076 0.924
37 H 0.079 0.921
38 H 0.084 0.916
39 H 0.100 0.900
40 H 0.100 0.900
41 H 0.079 0.921
42 H 0.075 0.925
43 H 0.078 0.922
44 H 0.172 0.828
45 H 0.200 0.800
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 31.384 -6.637 8.488 33.182
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.594 5.594
2 C -0.194 4.194
3 Si 0.773 3.227
4 H -0.194 1.194
5 H -0.211 1.211
6 H -0.163 1.163
7 C -0.572 4.572
8 H 0.050 0.950
9 C -0.048 4.048
10 C -0.139 4.139
11 C 0.004 3.996
12 N -0.349 5.349
13 C 0.144 3.856
14 C -0.184 4.184
15 C -0.685 4.685
16 S 2.818 3.182
17 O -0.968 6.968
18 O -0.956 6.956
19 N -0.850 5.850
20 C -0.019 4.019
21 C -0.162 4.162
22 C -0.165 4.165
23 C -0.024 4.024
24 C -0.171 4.171
25 C -0.020 4.020
26 N -0.250 5.250
27 H 0.075 0.925
28 H 0.047 0.953
29 H 0.041 0.959
30 H 0.075 0.925
31 H 0.079 0.921
32 H 0.092 0.908
33 H 0.085 0.915
34 H 0.245 0.755
35 H 0.164 0.836
36 H 0.095 0.905
37 H 0.097 0.903
38 H 0.103 0.897
39 H 0.118 0.882
40 H 0.118 0.882
41 H 0.098 0.902
42 H 0.093 0.907
43 H 0.096 0.904
44 H 0.189 0.811
45 H 0.217 0.783
Dipole moment (debyes) X Y Z Total
from point charges 30.875 -6.623 7.658 32.493
hybrid contribution -0.905 0.451 -0.098 1.016
sum 29.970 -6.172 7.561 31.519
Atomic orbital electron populations
1.70068 1.08429 1.28221 1.52639 1.26042 0.95608 1.03669 0.94071
0.85666 0.79746 0.78080 0.79232 1.19383 1.21082 1.16295 1.21472
0.92135 0.93110 1.50499 0.95000 1.19458 0.93887 0.94212 0.97242
1.21450 0.92308 0.98370 1.01797 1.21566 0.94689 0.81324 1.02031
1.44701 1.02207 1.08842 1.79129 1.18586 0.86136 0.89419 0.91466
1.21193 0.91913 1.00375 1.04955 1.31446 1.10506 1.16072 1.10447
1.00826 0.72781 0.72803 0.71777 1.93568 1.76915 1.49695 1.76631
1.93551 1.44873 1.80736 1.76440 1.58508 1.44870 1.52015 1.29630
1.22068 0.89713 0.98096 0.92032 1.22664 1.02892 0.95860 0.94740
1.22793 0.97769 0.97848 0.98087 1.22417 0.96042 0.90889 0.93089
1.21866 1.02985 0.90694 1.01574 1.23210 0.85882 1.01609 0.91323
1.67272 1.19891 1.19984 1.17832 0.92492 0.95304 0.95877 0.92488
0.92108 0.90821 0.91484 0.75462 0.83554 0.90546 0.90295 0.89718
0.88176 0.88155 0.90204 0.90659 0.90388 0.81059 0.78291
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 16.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.95 -59.70 13.96 21.45 0.30 -59.40 16
2 C 0.00 0.16 5.47 84.66 0.46 0.62 16
3 Si 0.95 43.49 27.47 68.60 1.88 45.38 16
4 H -0.27 -11.94 7.11 99.48 0.71 -11.23 16
5 H -0.28 -12.86 7.11 99.48 0.71 -12.16 16
6 H -0.24 -9.94 6.54 99.48 0.65 -9.29 16
7 C -0.53 -30.27 9.66 25.60 0.25 -30.03 16
8 H 0.03 1.99 7.99 -2.91 -0.02 1.97 16
9 C -0.01 -0.44 4.04 29.85 0.12 -0.32 16
10 C -0.10 -3.63 5.27 30.59 0.16 -3.47 16
11 C 0.13 3.70 4.89 86.38 0.42 4.12 16
12 N -0.72 -19.62 5.73 -345.08 -1.98 -21.60 16
13 C 0.38 10.38 7.65 133.06 1.02 11.40 16
14 C -0.16 -4.04 8.82 22.50 0.20 -3.85 16
15 C -0.59 -13.15 6.01 22.44 0.13 -13.01 16
16 S 2.73 59.45 5.97 -56.49 -0.34 59.12 16
17 O -0.98 -27.69 16.72 -128.00 -2.14 -29.83 16
18 O -0.97 -23.69 16.96 -128.00 -2.17 -25.86 16
19 N -1.01 -15.96 3.71 -505.68 -1.88 -17.83 16
20 C 0.11 1.11 6.98 86.73 0.61 1.72 16
21 C -0.12 -0.79 6.95 31.78 0.22 -0.57 16
22 C -0.13 -1.04 7.09 31.98 0.23 -0.81 16
23 C 0.10 1.37 7.12 86.79 0.62 1.99 16
24 C -0.15 -2.71 9.61 22.38 0.21 -2.50 16
25 C 0.14 2.62 11.17 84.62 0.95 3.57 16
26 N -0.53 -13.55 10.39 -193.27 -2.01 -15.56 16
27 H 0.27 15.55 8.31 -92.71 -0.77 14.78 16
28 H 0.03 1.23 7.20 -2.39 -0.02 1.21 16
29 H 0.02 0.99 7.57 -2.39 -0.02 0.97 16
30 H 0.06 2.09 8.14 -2.39 -0.02 2.07 16
31 H 0.06 2.19 8.14 -2.39 -0.02 2.17 16
32 H 0.07 1.97 7.93 -2.39 -0.02 1.96 16
33 H 0.07 1.92 7.93 -2.39 -0.02 1.90 16
34 H 0.41 10.74 8.60 -92.71 -0.80 9.95 16
35 H 0.15 3.71 6.36 -2.91 -0.02 3.69 16
36 H 0.08 0.78 8.14 -2.39 -0.02 0.76 16
37 H 0.08 0.64 8.14 -2.39 -0.02 0.62 16
38 H 0.08 0.45 8.14 -2.39 -0.02 0.43 16
39 H 0.10 0.32 8.14 -2.39 -0.02 0.30 16
40 H 0.10 0.55 8.14 -2.39 -0.02 0.54 16
41 H 0.08 0.64 8.14 -2.39 -0.02 0.62 16
42 H 0.08 0.95 8.14 -2.39 -0.02 0.93 16
43 H 0.08 1.20 7.80 -2.39 -0.02 1.18 16
44 H 0.17 2.18 7.71 -2.91 -0.02 2.15 16
45 H 0.20 2.10 8.06 -2.91 -0.02 2.07 16
Total: -1.00 -76.55 381.11 -2.59 -79.14
By element:
Atomic # 1 Polarization: 17.43 SS G_CDS: 0.14 Total: 17.58 kcal
Atomic # 6 Polarization: -36.73 SS G_CDS: 5.60 Total: -31.14 kcal
Atomic # 7 Polarization: -108.82 SS G_CDS: -5.56 Total: -114.39 kcal
Atomic # 8 Polarization: -51.38 SS G_CDS: -4.31 Total: -55.69 kcal
Atomic # 14 Polarization: 43.49 SS G_CDS: 1.88 Total: 45.38 kcal
Atomic # 16 Polarization: 59.45 SS G_CDS: -0.34 Total: 59.12 kcal
Total: -76.55 -2.59 -79.14 kcal
The number of atoms in the molecule is 45
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000287905383.mol2 45
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 17.732 kcal
(2) G-P(sol) polarization free energy of solvation -76.553 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.821 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.586 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.139 kcal
(6) G-S(sol) free energy of system = (1) + (5) -61.407 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.72 seconds