Wall clock time and date at job start Tue Mar 31 2020 22:38:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31522 * 1 3 3 Si 1.86802 * 119.99926 * 2 1 4 4 H 1.48499 * 109.46975 * 270.22615 * 3 2 1 5 5 H 1.48497 * 109.47183 * 30.22896 * 3 2 1 6 6 H 1.48503 * 109.46648 * 150.22960 * 3 2 1 7 7 C 1.37871 * 119.99509 * 180.02562 * 2 1 3 8 8 H 1.08003 * 120.00609 * 359.18936 * 7 2 1 9 9 C 1.50702 * 119.99662 * 179.18997 * 7 2 1 10 10 C 1.52995 * 115.55256 * 89.51286 * 9 7 2 11 11 S 1.81409 * 109.46914 * 33.43288 * 10 9 7 12 12 O 1.42101 * 110.54117 * 59.46652 * 11 10 9 13 13 O 1.42098 * 110.54013 * 282.71400 * 11 10 9 14 14 N 1.65601 * 104.44781 * 171.08937 * 11 10 9 15 15 C 1.46926 * 120.62755 * 94.32696 * 14 11 10 16 16 C 1.53200 * 108.77278 * 233.62791 * 15 14 11 17 17 C 1.53036 * 109.30953 * 305.36505 * 16 15 14 18 18 C 1.53074 * 109.65997 * 61.30230 * 17 16 15 19 19 C 1.46925 * 120.62961 * 274.34762 * 14 11 10 20 20 H 1.09007 * 109.58065 * 246.29931 * 19 14 11 21 21 C 1.50698 * 109.58935 * 6.58090 * 19 14 11 22 22 N 1.30497 * 125.64780 * 32.73524 * 21 19 14 23 23 C 1.34128 * 109.25701 * 179.73640 * 22 21 19 24 24 C 1.34672 * 108.02054 * 359.97438 * 23 22 21 25 25 N 1.35043 * 125.65097 * 212.42452 * 21 19 14 26 26 H 0.96996 * 126.39587 * 0.26778 * 25 21 19 27 27 C 1.53000 * 117.51855 * 235.21815 * 9 7 2 28 28 C 1.52996 * 60.00276 * 107.47839 * 27 9 7 29 29 H 0.97006 * 119.99694 * 359.97438 * 1 2 3 30 30 H 1.08996 * 109.47509 * 273.43565 * 10 9 7 31 31 H 1.09001 * 109.47370 * 153.42805 * 10 9 7 32 32 H 1.08992 * 109.58810 * 353.41394 * 15 14 11 33 33 H 1.08999 * 109.58783 * 113.69872 * 15 14 11 34 34 H 1.08994 * 109.49509 * 65.31599 * 16 15 14 35 35 H 1.08996 * 109.49328 * 185.41594 * 16 15 14 36 36 H 1.09002 * 109.46157 * 181.38813 * 17 16 15 37 37 H 1.09002 * 109.46688 * 301.35541 * 17 16 15 38 38 H 1.09006 * 109.62447 * 178.82360 * 18 17 16 39 39 H 1.08997 * 109.38912 * 58.72283 * 18 17 16 40 40 H 1.08001 * 125.99156 * 180.02562 * 23 22 21 41 41 H 1.07991 * 126.59041 * 180.02562 * 24 23 22 42 42 H 1.08997 * 117.50136 * 214.97499 * 27 9 7 43 43 H 1.09003 * 117.49933 * 359.97438 * 27 9 7 44 44 H 1.08997 * 117.50311 * 252.51008 * 28 27 9 45 45 H 1.08999 * 117.49587 * 107.49073 * 28 27 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.4919 2.0492 -1.4001 5 1 1.4491 2.6513 0.7049 6 1 3.5492 1.4387 0.6952 7 6 2.0045 -1.1941 -0.0005 8 1 1.4646 -2.1294 0.0123 9 6 3.5114 -1.1942 -0.0190 10 6 4.1882 -1.1733 1.3530 11 16 3.1756 -2.0979 2.5407 12 8 3.0132 -3.4442 2.1159 13 8 2.0607 -1.3212 2.9564 14 7 4.1237 -2.2083 3.8940 15 6 3.9978 -1.2250 4.9784 16 6 5.3806 -0.6340 5.2711 17 6 6.3646 -1.7691 5.5629 18 6 6.4781 -2.6800 4.3380 19 6 5.1070 -3.2912 4.0328 20 1 4.8112 -3.9509 4.8487 21 6 5.1783 -4.0766 2.7486 22 7 5.0080 -3.5907 1.5495 23 6 5.1482 -4.5750 0.6493 24 6 5.4163 -5.7141 1.3159 25 7 5.4350 -5.3985 2.6477 26 1 5.6018 -6.0101 3.3819 27 6 4.2046 -1.9756 -1.1369 28 6 4.2040 -0.4458 -1.1598 29 1 -0.4850 0.8401 0.0004 30 1 4.2936 -0.1423 1.6906 31 1 5.1733 -1.6341 1.2793 32 1 3.3176 -0.4298 4.6735 33 1 3.6106 -1.7143 5.8722 34 1 5.7246 -0.0677 4.4057 35 1 5.3185 0.0253 6.1368 36 1 7.3436 -1.3502 5.7957 37 1 6.0071 -2.3503 6.4130 38 1 7.1948 -3.4763 4.5390 39 1 6.8143 -2.0950 3.4819 40 1 5.0622 -4.4721 -0.4223 41 1 5.5840 -6.6891 0.8829 42 1 5.1427 -2.4750 -0.8949 43 1 3.5708 -2.4902 -1.8591 44 1 3.5697 0.0463 -1.8971 45 1 5.1417 0.0613 -0.9328 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000329638547.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:38:41 Heat of formation + Delta-G solvation = 59.842190 kcal Electronic energy + Delta-G solvation = -30582.633002 eV Core-core repulsion = 26731.071039 eV Total energy + Delta-G solvation = -3851.561963 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -41.87150 -38.38414 -36.81447 -35.92833 -34.58105 -32.53524 -32.27998 -31.98052 -31.73555 -28.44023 -27.95682 -25.38193 -24.45073 -23.53537 -21.78431 -21.08975 -20.65237 -20.30382 -19.13485 -18.41683 -17.46310 -16.68712 -16.10070 -15.61494 -15.20313 -14.93450 -14.64592 -14.48118 -14.23372 -14.06406 -13.81831 -13.66340 -13.47336 -13.12294 -13.04020 -12.73240 -12.48112 -12.42075 -12.19176 -11.46862 -11.31081 -11.05065 -10.98687 -10.93284 -10.79132 -10.65962 -10.63113 -10.41855 -10.34065 -10.09523 -9.76957 -9.60824 -9.40604 -9.10445 -8.85902 -8.66271 -8.45817 -8.15918 -7.92154 -6.03712 -4.14057 1.47751 2.30648 3.13365 3.35955 3.44504 3.48524 3.50909 3.78683 4.33735 4.50409 4.67009 4.76811 4.92689 5.01310 5.03171 5.13216 5.19750 5.27132 5.28809 5.38079 5.51703 5.60617 5.61845 5.72498 5.78239 5.86870 5.87847 5.95096 5.98875 6.02779 6.16712 6.26152 6.28284 6.37922 6.44871 6.52035 6.62258 6.69657 6.85045 6.99632 7.12070 7.24188 7.29488 7.59091 7.84025 8.33516 8.54575 9.01981 9.60245 11.08120 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.013148 B = 0.006602 C = 0.005338 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2129.044010 B = 4240.237474 C = 5244.325636 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.877 5.877 2 C 0.101 3.899 3 Si 0.877 3.123 4 H -0.277 1.277 5 H -0.291 1.291 6 H -0.256 1.256 7 C -0.537 4.537 8 H 0.085 0.915 9 C 0.030 3.970 10 C -0.560 4.560 11 S 2.649 3.351 12 O -0.954 6.954 13 O -0.959 6.959 14 N -1.009 6.009 15 C 0.119 3.881 16 C -0.139 4.139 17 C -0.114 4.114 18 C -0.126 4.126 19 C 0.251 3.749 20 H 0.082 0.918 21 C 0.191 3.809 22 N -0.463 5.463 23 C 0.011 3.989 24 C -0.063 4.063 25 N -0.555 5.555 26 H 0.413 0.587 27 C -0.165 4.165 28 C -0.201 4.201 29 H 0.266 0.734 30 H 0.094 0.906 31 H 0.135 0.865 32 H 0.096 0.904 33 H 0.066 0.934 34 H 0.069 0.931 35 H 0.074 0.926 36 H 0.065 0.935 37 H 0.063 0.937 38 H 0.070 0.930 39 H 0.077 0.923 40 H 0.169 0.831 41 H 0.172 0.828 42 H 0.081 0.919 43 H 0.084 0.916 44 H 0.086 0.914 45 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.029 -7.506 10.711 21.472 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.512 5.512 2 C -0.105 4.105 3 Si 0.705 3.295 4 H -0.203 1.203 5 H -0.218 1.218 6 H -0.181 1.181 7 C -0.575 4.575 8 H 0.103 0.897 9 C 0.027 3.973 10 C -0.692 4.692 11 S 2.747 3.253 12 O -0.943 6.943 13 O -0.949 6.949 14 N -0.844 5.844 15 C -0.006 4.006 16 C -0.178 4.178 17 C -0.151 4.151 18 C -0.166 4.166 19 C 0.141 3.859 20 H 0.100 0.900 21 C -0.073 4.073 22 N -0.185 5.185 23 C -0.138 4.138 24 C -0.196 4.196 25 N -0.158 5.158 26 H 0.250 0.750 27 C -0.202 4.202 28 C -0.239 4.239 29 H 0.076 0.924 30 H 0.112 0.888 31 H 0.153 0.847 32 H 0.115 0.885 33 H 0.084 0.916 34 H 0.088 0.912 35 H 0.092 0.908 36 H 0.084 0.916 37 H 0.082 0.918 38 H 0.089 0.911 39 H 0.095 0.905 40 H 0.186 0.814 41 H 0.189 0.811 42 H 0.099 0.901 43 H 0.102 0.898 44 H 0.104 0.896 45 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 15.741 -6.931 10.452 20.126 hybrid contribution 1.066 0.077 0.168 1.082 sum 16.807 -6.854 10.621 21.029 Atomic orbital electron populations 1.69887 1.06567 1.27310 1.47401 1.24938 0.94447 0.99013 0.92131 0.86905 0.80768 0.83493 0.78378 1.20326 1.21814 1.18055 1.20542 0.86536 0.95226 1.55199 0.89706 1.18539 0.93665 1.00960 0.84110 1.30311 1.14865 1.10990 1.13034 1.03977 0.73422 0.75322 0.72530 1.93540 1.85089 1.34719 1.80920 1.93499 1.47474 1.73364 1.80594 1.58498 1.54235 1.35883 1.35828 1.21373 0.97081 0.91700 0.90448 1.21975 0.95674 0.97910 1.02271 1.21459 0.99498 0.96878 0.97295 1.21985 0.95320 0.99708 0.99579 1.18743 0.89831 0.87169 0.90114 0.89999 1.22722 1.06036 0.82860 0.95658 1.70007 1.17009 1.33067 0.98432 1.22054 1.04035 0.88418 0.99250 1.22556 1.13159 1.01222 0.82625 1.42720 1.55551 1.09043 1.08457 0.75043 1.22882 1.01196 0.92545 1.03569 1.22959 1.01276 0.95111 1.04573 0.92368 0.88808 0.84703 0.88530 0.91565 0.91175 0.90781 0.91588 0.91801 0.91138 0.90452 0.81404 0.81059 0.90105 0.89785 0.89608 0.91080 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -28.15 13.96 55.43 0.77 -27.37 16 2 C 0.10 3.07 5.47 -17.82 -0.10 2.97 16 3 Si 0.88 22.85 24.96 -169.99 -4.24 18.60 16 4 H -0.28 -6.92 7.09 56.52 0.40 -6.52 16 5 H -0.29 -7.55 7.11 56.52 0.40 -7.15 16 6 H -0.26 -6.22 5.49 56.52 0.31 -5.91 16 7 C -0.54 -15.97 7.42 -34.44 -0.26 -16.23 16 8 H 0.09 2.81 8.06 -52.48 -0.42 2.39 16 9 C 0.03 0.73 1.19 -155.66 -0.18 0.55 16 10 C -0.56 -12.31 5.25 37.16 0.20 -12.11 16 11 S 2.65 60.54 3.68 -107.50 -0.40 60.15 16 12 O -0.95 -23.33 13.06 -57.54 -0.75 -24.08 16 13 O -0.96 -25.98 15.91 -57.54 -0.92 -26.90 16 14 N -1.01 -16.78 3.22 -107.70 -0.35 -17.13 16 15 C 0.12 1.66 6.34 -3.71 -0.02 1.64 16 16 C -0.14 -1.47 6.09 -26.61 -0.16 -1.63 16 17 C -0.11 -0.99 5.88 -26.67 -0.16 -1.15 16 18 C -0.13 -1.27 5.36 -26.60 -0.14 -1.42 16 19 C 0.25 3.31 3.40 -68.76 -0.23 3.08 16 20 H 0.08 0.90 8.14 -51.93 -0.42 0.48 16 21 C 0.19 2.89 5.25 -155.42 -0.82 2.08 16 22 N -0.46 -8.24 3.87 -10.82 -0.04 -8.28 16 23 C 0.01 0.18 10.58 -17.81 -0.19 -0.01 16 24 C -0.06 -0.79 12.04 -16.56 -0.20 -0.99 16 25 N -0.55 -6.62 6.15 -10.23 -0.06 -6.68 16 26 H 0.41 3.24 8.96 -40.82 -0.37 2.87 16 27 C -0.16 -3.52 9.31 -26.73 -0.25 -3.77 16 28 C -0.20 -4.49 7.49 -26.73 -0.20 -4.69 16 29 H 0.27 7.96 8.31 -40.82 -0.34 7.62 16 30 H 0.09 2.01 6.69 -51.93 -0.35 1.66 16 31 H 0.14 2.62 5.69 -51.92 -0.30 2.33 16 32 H 0.10 1.51 6.97 -51.93 -0.36 1.15 16 33 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 34 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 35 H 0.07 0.63 8.14 -51.93 -0.42 0.20 16 36 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 37 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 38 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 39 H 0.08 0.88 8.14 -51.93 -0.42 0.46 16 40 H 0.17 2.53 6.91 -52.49 -0.36 2.17 16 41 H 0.17 1.50 8.06 -52.49 -0.42 1.08 16 42 H 0.08 1.51 6.22 -51.93 -0.32 1.19 16 43 H 0.08 1.81 8.14 -51.93 -0.42 1.39 16 44 H 0.09 2.00 6.95 -51.93 -0.36 1.64 16 45 H 0.07 1.43 8.14 -51.93 -0.42 1.01 16 LS Contribution 349.78 15.07 5.27 5.27 Total: -1.00 -38.92 349.78 -10.14 -49.06 By element: Atomic # 1 Polarization: 15.75 SS G_CDS: -6.72 Total: 9.03 kcal Atomic # 6 Polarization: -28.97 SS G_CDS: -2.71 Total: -31.68 kcal Atomic # 7 Polarization: -59.78 SS G_CDS: 0.32 Total: -59.45 kcal Atomic # 8 Polarization: -49.31 SS G_CDS: -1.67 Total: -50.98 kcal Atomic # 14 Polarization: 22.85 SS G_CDS: -4.24 Total: 18.60 kcal Atomic # 16 Polarization: 60.54 SS G_CDS: -0.40 Total: 60.15 kcal Total LS contribution 5.27 Total: 5.27 kcal Total: -38.92 -10.14 -49.06 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000329638547.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 108.906 kcal (2) G-P(sol) polarization free energy of solvation -38.921 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 69.985 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.143 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -49.064 kcal (6) G-S(sol) free energy of system = (1) + (5) 59.842 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds