Wall clock time and date at job start Tue Mar 31 2020 22:38:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31522 * 1 3 3 Si 1.86802 * 119.99926 * 2 1 4 4 H 1.48499 * 109.46975 * 270.22615 * 3 2 1 5 5 H 1.48497 * 109.47183 * 30.22896 * 3 2 1 6 6 H 1.48503 * 109.46648 * 150.22960 * 3 2 1 7 7 C 1.37871 * 119.99509 * 180.02562 * 2 1 3 8 8 H 1.08003 * 120.00609 * 359.18936 * 7 2 1 9 9 C 1.50702 * 119.99662 * 179.18997 * 7 2 1 10 10 C 1.52995 * 115.55256 * 89.51286 * 9 7 2 11 11 S 1.81409 * 109.46914 * 33.43288 * 10 9 7 12 12 O 1.42101 * 110.54117 * 59.46652 * 11 10 9 13 13 O 1.42098 * 110.54013 * 282.71400 * 11 10 9 14 14 N 1.65601 * 104.44781 * 171.08937 * 11 10 9 15 15 C 1.46926 * 120.62755 * 94.32696 * 14 11 10 16 16 C 1.53200 * 108.77278 * 233.62791 * 15 14 11 17 17 C 1.53036 * 109.30953 * 305.36505 * 16 15 14 18 18 C 1.53074 * 109.65997 * 61.30230 * 17 16 15 19 19 C 1.46925 * 120.62961 * 274.34762 * 14 11 10 20 20 H 1.09007 * 109.58065 * 246.29931 * 19 14 11 21 21 C 1.50698 * 109.58935 * 6.58090 * 19 14 11 22 22 N 1.30497 * 125.64780 * 32.73524 * 21 19 14 23 23 C 1.34128 * 109.25701 * 179.73640 * 22 21 19 24 24 C 1.34672 * 108.02054 * 359.97438 * 23 22 21 25 25 N 1.35043 * 125.65097 * 212.42452 * 21 19 14 26 26 H 0.96996 * 126.39587 * 0.26778 * 25 21 19 27 27 C 1.53000 * 117.51855 * 235.21815 * 9 7 2 28 28 C 1.52996 * 60.00276 * 107.47839 * 27 9 7 29 29 H 0.97006 * 119.99694 * 359.97438 * 1 2 3 30 30 H 1.08996 * 109.47509 * 273.43565 * 10 9 7 31 31 H 1.09001 * 109.47370 * 153.42805 * 10 9 7 32 32 H 1.08992 * 109.58810 * 353.41394 * 15 14 11 33 33 H 1.08999 * 109.58783 * 113.69872 * 15 14 11 34 34 H 1.08994 * 109.49509 * 65.31599 * 16 15 14 35 35 H 1.08996 * 109.49328 * 185.41594 * 16 15 14 36 36 H 1.09002 * 109.46157 * 181.38813 * 17 16 15 37 37 H 1.09002 * 109.46688 * 301.35541 * 17 16 15 38 38 H 1.09006 * 109.62447 * 178.82360 * 18 17 16 39 39 H 1.08997 * 109.38912 * 58.72283 * 18 17 16 40 40 H 1.08001 * 125.99156 * 180.02562 * 23 22 21 41 41 H 1.07991 * 126.59041 * 180.02562 * 24 23 22 42 42 H 1.08997 * 117.50136 * 214.97499 * 27 9 7 43 43 H 1.09003 * 117.49933 * 359.97438 * 27 9 7 44 44 H 1.08997 * 117.50311 * 252.51008 * 28 27 9 45 45 H 1.08999 * 117.49587 * 107.49073 * 28 27 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.4919 2.0492 -1.4001 5 1 1.4491 2.6513 0.7049 6 1 3.5492 1.4387 0.6952 7 6 2.0045 -1.1941 -0.0005 8 1 1.4646 -2.1294 0.0123 9 6 3.5114 -1.1942 -0.0190 10 6 4.1882 -1.1733 1.3530 11 16 3.1756 -2.0979 2.5407 12 8 3.0132 -3.4442 2.1159 13 8 2.0607 -1.3212 2.9564 14 7 4.1237 -2.2083 3.8940 15 6 3.9978 -1.2250 4.9784 16 6 5.3806 -0.6340 5.2711 17 6 6.3646 -1.7691 5.5629 18 6 6.4781 -2.6800 4.3380 19 6 5.1070 -3.2912 4.0328 20 1 4.8112 -3.9509 4.8487 21 6 5.1783 -4.0766 2.7486 22 7 5.0080 -3.5907 1.5495 23 6 5.1482 -4.5750 0.6493 24 6 5.4163 -5.7141 1.3159 25 7 5.4350 -5.3985 2.6477 26 1 5.6018 -6.0101 3.3819 27 6 4.2046 -1.9756 -1.1369 28 6 4.2040 -0.4458 -1.1598 29 1 -0.4850 0.8401 0.0004 30 1 4.2936 -0.1423 1.6906 31 1 5.1733 -1.6341 1.2793 32 1 3.3176 -0.4298 4.6735 33 1 3.6106 -1.7143 5.8722 34 1 5.7246 -0.0677 4.4057 35 1 5.3185 0.0253 6.1368 36 1 7.3436 -1.3502 5.7957 37 1 6.0071 -2.3503 6.4130 38 1 7.1948 -3.4763 4.5390 39 1 6.8143 -2.0950 3.4819 40 1 5.0622 -4.4721 -0.4223 41 1 5.5840 -6.6891 0.8829 42 1 5.1427 -2.4750 -0.8949 43 1 3.5708 -2.4902 -1.8591 44 1 3.5697 0.0463 -1.8971 45 1 5.1417 0.0613 -0.9328 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000329638547.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:38:40 Heat of formation + Delta-G solvation = 30.390541 kcal Electronic energy + Delta-G solvation = -30583.910121 eV Core-core repulsion = 26731.071039 eV Total energy + Delta-G solvation = -3852.839082 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -42.92089 -39.37007 -38.68697 -37.74391 -36.42515 -34.31353 -33.52143 -33.28893 -32.77008 -29.92980 -29.25790 -27.57952 -25.51068 -24.46188 -23.39558 -22.30372 -21.67988 -21.57480 -20.77500 -19.73223 -19.00389 -18.49490 -17.62021 -17.10748 -16.96192 -16.44909 -15.95636 -15.65898 -15.53405 -15.32374 -15.18319 -14.85003 -14.68567 -14.56671 -14.39327 -14.27684 -14.21671 -13.91658 -13.43361 -13.10163 -12.67481 -12.64614 -12.62040 -12.52308 -12.24375 -12.20053 -11.96167 -11.92108 -11.65353 -11.58906 -11.53778 -11.32929 -10.94593 -10.71433 -10.52352 -10.31961 -10.13622 -9.80356 -9.00141 -8.36059 -6.50547 -0.20343 1.27907 1.28553 1.32228 1.44116 2.03546 2.32623 2.40354 2.49735 3.01345 3.20667 3.39691 3.42422 3.70277 3.74273 4.04762 4.07885 4.12914 4.20604 4.32478 4.39837 4.43563 4.48373 4.52481 4.66549 4.74371 4.78302 4.80474 4.87904 4.90713 4.96460 5.00126 5.06465 5.11997 5.23313 5.26523 5.28705 5.30349 5.39526 5.54364 5.54927 5.70660 5.80663 6.10446 6.21608 6.64945 6.71983 7.26907 7.27126 8.80961 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.013148 B = 0.006602 C = 0.005338 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2129.044010 B = 4240.237474 C = 5244.325636 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.935 5.935 2 C 0.039 3.961 3 Si 0.928 3.072 4 H -0.255 1.255 5 H -0.293 1.293 6 H -0.226 1.226 7 C -0.534 4.534 8 H 0.024 0.976 9 C -0.005 4.005 10 C -0.547 4.547 11 S 2.649 3.351 12 O -0.982 6.982 13 O -1.020 7.020 14 N -1.005 6.005 15 C 0.108 3.892 16 C -0.136 4.136 17 C -0.109 4.109 18 C -0.119 4.119 19 C 0.242 3.758 20 H 0.107 0.893 21 C 0.173 3.827 22 N -0.502 5.502 23 C -0.038 4.038 24 C -0.039 4.039 25 N -0.540 5.540 26 H 0.433 0.567 27 C -0.146 4.146 28 C -0.190 4.190 29 H 0.268 0.732 30 H 0.097 0.903 31 H 0.164 0.836 32 H 0.068 0.932 33 H 0.086 0.914 34 H 0.060 0.940 35 H 0.098 0.902 36 H 0.089 0.911 37 H 0.081 0.919 38 H 0.101 0.899 39 H 0.063 0.937 40 H 0.165 0.835 41 H 0.212 0.788 42 H 0.113 0.887 43 H 0.072 0.928 44 H 0.074 0.926 45 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 21.698 -7.750 12.358 26.146 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.572 5.572 2 C -0.161 4.161 3 Si 0.750 3.250 4 H -0.180 1.180 5 H -0.220 1.220 6 H -0.148 1.148 7 C -0.572 4.572 8 H 0.043 0.957 9 C -0.007 4.007 10 C -0.680 4.680 11 S 2.749 3.251 12 O -0.971 6.971 13 O -1.010 7.010 14 N -0.844 5.844 15 C -0.017 4.017 16 C -0.174 4.174 17 C -0.146 4.146 18 C -0.159 4.159 19 C 0.134 3.866 20 H 0.125 0.875 21 C -0.092 4.092 22 N -0.225 5.225 23 C -0.185 4.185 24 C -0.173 4.173 25 N -0.145 5.145 26 H 0.274 0.726 27 C -0.182 4.182 28 C -0.228 4.228 29 H 0.077 0.923 30 H 0.116 0.884 31 H 0.181 0.819 32 H 0.086 0.914 33 H 0.104 0.896 34 H 0.079 0.921 35 H 0.116 0.884 36 H 0.108 0.892 37 H 0.099 0.901 38 H 0.119 0.881 39 H 0.082 0.918 40 H 0.182 0.818 41 H 0.228 0.772 42 H 0.131 0.869 43 H 0.090 0.910 44 H 0.093 0.907 45 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges 20.428 -7.213 12.111 24.820 hybrid contribution -0.421 -0.063 -0.312 0.528 sum 20.008 -7.276 11.798 24.340 Atomic orbital electron populations 1.70046 1.08725 1.28387 1.50014 1.25914 0.95214 1.03269 0.91749 0.86078 0.80654 0.78322 0.79913 1.17956 1.21981 1.14814 1.20604 0.89621 0.92801 1.54204 0.95725 1.18443 0.90924 1.04848 0.86496 1.30181 1.15537 1.11296 1.10943 1.03466 0.73534 0.74524 0.73548 1.93499 1.85985 1.35685 1.81965 1.93424 1.51279 1.74459 1.81816 1.57951 1.54498 1.37554 1.34397 1.21659 0.99240 0.90851 0.89931 1.21988 0.93655 0.98888 1.02916 1.21484 1.00068 0.96000 0.97082 1.21993 0.93555 1.00608 0.99737 1.19267 0.90702 0.86544 0.90089 0.87521 1.23048 1.06351 0.84177 0.95635 1.69743 1.18248 1.34704 0.99789 1.22290 1.06873 0.89824 0.99558 1.23086 1.09953 1.01722 0.82547 1.42677 1.54323 1.08455 1.09018 0.72598 1.22905 1.01646 0.92548 1.01152 1.23047 1.01846 0.95702 1.02221 0.92283 0.88417 0.81887 0.91385 0.89577 0.92108 0.88353 0.89234 0.90057 0.88058 0.91806 0.81767 0.77164 0.86901 0.90986 0.90726 0.87588 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -63.59 13.96 21.45 0.30 -63.29 16 2 C 0.04 2.48 5.47 84.65 0.46 2.94 16 3 Si 0.93 47.17 24.96 68.60 1.71 48.88 16 4 H -0.25 -11.98 7.09 99.48 0.71 -11.27 16 5 H -0.29 -14.86 7.11 99.48 0.71 -14.15 16 6 H -0.23 -10.23 5.49 99.48 0.55 -9.68 16 7 C -0.53 -33.42 7.42 25.60 0.19 -33.23 16 8 H 0.02 1.78 8.06 -2.91 -0.02 1.75 16 9 C 0.00 -0.24 1.19 -52.93 -0.06 -0.30 16 10 C -0.55 -23.74 5.25 71.98 0.38 -23.36 16 11 S 2.65 124.45 3.68 -56.49 -0.21 124.25 16 12 O -0.98 -49.81 13.06 -127.65 -1.67 -51.48 16 13 O -1.02 -58.52 15.91 -127.65 -2.03 -60.55 16 14 N -1.01 -32.57 3.22 -494.65 -1.59 -34.17 16 15 C 0.11 2.89 6.34 86.37 0.55 3.43 16 16 C -0.14 -2.44 6.09 30.67 0.19 -2.25 16 17 C -0.11 -1.39 5.88 30.63 0.18 -1.21 16 18 C -0.12 -1.92 5.36 30.68 0.16 -1.75 16 19 C 0.24 5.76 3.40 44.23 0.15 5.91 16 20 H 0.11 1.99 8.14 -2.38 -0.02 1.97 16 21 C 0.17 4.88 5.25 138.13 0.72 5.60 16 22 N -0.50 -17.32 3.87 -188.13 -0.73 -18.05 16 23 C -0.04 -1.18 10.58 83.52 0.88 -0.30 16 24 C -0.04 -0.88 12.04 83.09 1.00 0.12 16 25 N -0.54 -11.32 6.15 -186.28 -1.15 -12.46 16 26 H 0.43 5.19 8.96 -92.71 -0.83 4.36 16 27 C -0.15 -6.12 9.31 30.59 0.28 -5.84 16 28 C -0.19 -8.10 7.49 30.59 0.23 -7.87 16 29 H 0.27 16.96 8.31 -92.70 -0.77 16.19 16 30 H 0.10 4.07 6.69 -2.39 -0.02 4.05 16 31 H 0.16 6.09 5.69 -2.39 -0.01 6.07 16 32 H 0.07 2.20 6.97 -2.39 -0.02 2.18 16 33 H 0.09 1.92 8.14 -2.39 -0.02 1.90 16 34 H 0.06 1.21 8.14 -2.39 -0.02 1.19 16 35 H 0.10 1.31 8.14 -2.39 -0.02 1.29 16 36 H 0.09 0.81 8.14 -2.39 -0.02 0.79 16 37 H 0.08 0.80 8.14 -2.39 -0.02 0.78 16 38 H 0.10 1.05 8.14 -2.38 -0.02 1.03 16 39 H 0.06 1.23 8.14 -2.39 -0.02 1.21 16 40 H 0.17 4.92 6.91 -2.91 -0.02 4.90 16 41 H 0.21 2.88 8.06 -2.92 -0.02 2.86 16 42 H 0.11 4.01 6.22 -2.39 -0.01 3.99 16 43 H 0.07 3.16 8.14 -2.39 -0.02 3.14 16 44 H 0.07 3.35 6.95 -2.39 -0.02 3.34 16 45 H 0.11 3.80 8.14 -2.39 -0.02 3.78 16 Total: -1.00 -93.30 349.78 -0.02 -93.32 By element: Atomic # 1 Polarization: 31.65 SS G_CDS: 0.02 Total: 31.66 kcal Atomic # 6 Polarization: -63.44 SS G_CDS: 5.32 Total: -58.12 kcal Atomic # 7 Polarization: -124.81 SS G_CDS: -3.17 Total: -127.97 kcal Atomic # 8 Polarization: -108.33 SS G_CDS: -3.70 Total: -112.03 kcal Atomic # 14 Polarization: 47.17 SS G_CDS: 1.71 Total: 48.88 kcal Atomic # 16 Polarization: 124.45 SS G_CDS: -0.21 Total: 124.25 kcal Total: -93.30 -0.02 -93.32 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000329638547.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 123.713 kcal (2) G-P(sol) polarization free energy of solvation -93.299 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.414 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.023 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -93.322 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.391 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds