Wall clock time and date at job start Tue Mar 31 2020 23:27:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 N 1.30832 * 125.89900 * 2 1 4 4 N 1.40085 * 108.20599 * 180.02562 * 3 2 1 5 5 C 1.46500 * 126.03813 * 179.74170 * 4 3 2 6 6 C 1.34943 * 107.92716 * 0.02562 * 4 3 2 7 7 C 1.50697 * 126.13122 * 180.02562 * 6 4 3 8 8 C 1.35316 * 107.74531 * 359.97438 * 6 4 3 9 9 C 1.50700 * 126.04188 * 180.02562 * 8 6 4 10 10 H 1.09002 * 110.33347 * 17.25152 * 9 8 6 11 11 O 1.44429 * 110.37175 * 139.61840 * 9 8 6 12 12 C 1.44428 * 105.27147 * 159.34512 * 11 9 8 13 13 C 1.54482 * 104.80315 * 319.48553 * 12 11 9 14 14 C 1.54479 * 110.37461 * 255.00239 * 9 8 6 15 15 H 1.09005 * 110.50730 * 335.83481 * 14 9 8 16 16 N 1.46498 * 110.51228 * 98.40492 * 14 9 8 17 17 C 1.34777 * 119.99875 * 205.00218 * 16 14 9 18 18 O 1.21276 * 120.00185 * 359.97438 * 17 16 14 19 19 C 1.50703 * 119.99462 * 180.02562 * 17 16 14 20 20 S 1.80999 * 109.46835 * 180.02562 * 19 17 16 21 21 C 1.76198 * 100.00341 * 179.97438 * 20 19 17 22 22 H 1.08003 * 119.99449 * 359.97438 * 21 20 19 23 23 C 1.38790 * 120.00271 * 180.02562 * 21 20 19 24 24 N 1.31632 * 120.00410 * 359.97438 * 23 21 20 25 25 Si 1.86805 * 119.99949 * 179.97438 * 23 21 20 26 26 H 1.48501 * 109.46896 * 60.00431 * 25 23 21 27 27 H 1.48501 * 109.47133 * 179.97438 * 25 23 21 28 28 H 1.48494 * 109.47317 * 299.99922 * 25 23 21 29 29 H 1.08996 * 109.47459 * 89.97393 * 1 2 3 30 30 H 1.09004 * 109.47206 * 209.97278 * 1 2 3 31 31 H 1.09000 * 109.47294 * 329.97162 * 1 2 3 32 32 H 1.08997 * 109.47763 * 90.01881 * 5 4 3 33 33 H 1.09004 * 109.47211 * 210.02331 * 5 4 3 34 34 H 1.09012 * 109.46942 * 330.02017 * 5 4 3 35 35 H 1.09001 * 109.47870 * 90.01729 * 7 6 4 36 36 H 1.09003 * 109.47509 * 210.02274 * 7 6 4 37 37 H 1.09004 * 109.47023 * 330.01818 * 7 6 4 38 38 H 1.09001 * 110.37014 * 200.65911 * 12 11 9 39 39 H 1.08999 * 110.37407 * 78.32579 * 12 11 9 40 40 H 1.08996 * 110.51153 * 265.33494 * 13 12 11 41 41 H 1.09002 * 110.62287 * 142.68272 * 13 12 11 42 42 H 0.97005 * 119.99700 * 25.00385 * 16 14 9 43 43 H 1.09001 * 109.46900 * 299.98973 * 19 17 16 44 44 H 1.08999 * 109.47536 * 59.99658 * 19 17 16 45 45 H 0.96998 * 120.00222 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2741 1.0598 0.0000 4 7 3.6087 0.6341 -0.0006 5 6 4.7899 1.5007 -0.0061 6 6 3.6142 -0.7153 -0.0015 7 6 4.8350 -1.5989 -0.0019 8 6 2.3271 -1.1330 -0.0009 9 6 1.8599 -2.5658 -0.0011 10 1 2.6706 -3.2286 0.3014 11 8 0.7239 -2.7242 0.8767 12 6 0.0714 -3.9362 0.4394 13 6 0.1324 -3.8827 -1.1033 14 6 1.3361 -2.9605 -1.3997 15 1 1.0136 -2.0767 -1.9502 16 7 2.3673 -3.6825 -2.1491 17 6 2.3462 -3.6812 -3.4967 18 8 1.4734 -3.0827 -4.0889 19 6 3.4067 -4.4244 -4.2675 20 16 3.1077 -4.2335 -6.0424 21 6 4.4541 -5.1729 -6.6823 22 1 5.1498 -5.6485 -6.0070 23 6 4.6210 -5.3007 -8.0542 24 7 3.7734 -4.7205 -8.8774 25 14 6.0489 -6.2960 -8.7326 26 1 5.9482 -7.6973 -8.2514 27 1 6.0035 -6.2785 -10.2168 28 1 7.3294 -5.7042 -8.2690 29 1 -0.3634 0.0005 -1.0276 30 1 -0.3634 -0.8903 0.5134 31 1 -0.3634 0.8897 0.5143 32 1 5.0849 1.7196 1.0201 33 1 5.6083 0.9962 -0.5197 34 1 4.5552 2.4314 -0.5231 35 1 5.1290 -1.8130 1.0257 36 1 4.6078 -2.5324 -0.5167 37 1 5.6514 -1.0905 -0.5149 38 1 -0.9646 -3.9526 0.7778 39 1 0.6065 -4.8104 0.8103 40 1 -0.7851 -3.4549 -1.5072 41 1 0.3027 -4.8773 -1.5155 42 1 3.0652 -4.1615 -1.6753 43 1 4.3876 -4.0190 -4.0191 44 1 3.3733 -5.4817 -4.0046 45 1 3.8903 -4.8096 -9.8361 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000332329078.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:27:33 Heat of formation + Delta-G solvation = -7.760455 kcal Electronic energy + Delta-G solvation = -27509.461459 eV Core-core repulsion = 23654.968026 eV Total energy + Delta-G solvation = -3854.493433 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -41.66105 -39.94545 -38.48853 -34.44718 -34.30206 -32.74995 -32.44811 -31.15154 -29.78835 -29.45065 -28.45034 -26.48119 -25.53193 -25.22237 -22.97430 -21.64913 -20.29223 -19.83324 -19.63083 -17.90807 -16.92641 -16.83671 -16.39442 -15.87531 -15.82215 -15.15734 -14.83056 -14.82573 -14.64862 -13.97242 -13.93142 -13.78556 -13.63478 -13.43038 -13.22859 -13.07080 -12.83698 -12.75711 -12.57159 -12.51027 -12.11383 -12.07637 -11.96452 -11.69438 -11.45031 -11.06879 -11.05867 -10.95977 -10.79205 -10.64491 -9.92622 -9.84157 -9.42310 -9.15579 -9.09006 -9.01620 -8.37783 -8.25821 -6.52070 -6.23339 -3.94263 1.67998 2.32521 2.52862 2.96811 3.06210 3.21475 3.25207 3.27987 3.59138 3.93046 4.18508 4.31629 4.38663 4.53660 4.57846 4.78717 4.83145 4.86962 4.91942 4.94741 5.06285 5.11365 5.11678 5.15421 5.20449 5.24844 5.33177 5.52679 5.54046 5.57899 5.63334 5.68347 5.84792 5.88168 5.91541 5.94581 6.01921 6.07756 6.09980 6.44758 6.60114 6.73781 6.86260 7.56954 7.63654 7.65898 8.32820 8.59157 9.21704 10.83984 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.013633 B = 0.002863 C = 0.002591 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2053.288510 B = 9776.968371 C =10802.620264 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.081 4.081 2 C 0.105 3.895 3 N -0.301 5.301 4 N -0.374 5.374 5 C 0.102 3.898 6 C 0.102 3.898 7 C -0.096 4.096 8 C -0.238 4.238 9 C 0.158 3.842 10 H 0.075 0.925 11 O -0.358 6.358 12 C 0.043 3.957 13 C -0.169 4.169 14 C 0.125 3.875 15 H 0.104 0.896 16 N -0.729 5.729 17 C 0.534 3.466 18 O -0.513 6.513 19 C -0.153 4.153 20 S -0.059 6.059 21 C -0.537 4.537 22 H 0.072 0.928 23 C 0.074 3.926 24 N -0.867 5.867 25 Si 0.918 3.082 26 H -0.274 1.274 27 H -0.283 1.283 28 H -0.274 1.274 29 H 0.075 0.925 30 H 0.094 0.906 31 H 0.068 0.932 32 H 0.073 0.927 33 H 0.087 0.913 34 H 0.089 0.911 35 H 0.082 0.918 36 H 0.085 0.915 37 H 0.074 0.926 38 H 0.094 0.906 39 H 0.060 0.940 40 H 0.083 0.917 41 H 0.084 0.916 42 H 0.396 0.604 43 H 0.088 0.912 44 H 0.090 0.910 45 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.424 5.206 23.532 24.105 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.062 4.062 3 N -0.123 5.123 4 N -0.155 5.155 5 C -0.040 4.040 6 C -0.026 4.026 7 C -0.154 4.154 8 C -0.249 4.249 9 C 0.098 3.902 10 H 0.093 0.907 11 O -0.277 6.277 12 C -0.034 4.034 13 C -0.208 4.208 14 C 0.019 3.981 15 H 0.122 0.878 16 N -0.384 5.384 17 C 0.320 3.680 18 O -0.386 6.386 19 C -0.304 4.304 20 S 0.168 5.832 21 C -0.685 4.685 22 H 0.090 0.910 23 C -0.135 4.135 24 N -0.503 5.503 25 Si 0.744 3.256 26 H -0.199 1.199 27 H -0.208 1.208 28 H -0.200 1.200 29 H 0.094 0.906 30 H 0.112 0.888 31 H 0.087 0.913 32 H 0.092 0.908 33 H 0.105 0.895 34 H 0.108 0.892 35 H 0.101 0.899 36 H 0.104 0.896 37 H 0.093 0.907 38 H 0.112 0.888 39 H 0.079 0.921 40 H 0.102 0.898 41 H 0.103 0.897 42 H 0.230 0.770 43 H 0.107 0.893 44 H 0.108 0.892 45 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -1.827 7.795 22.518 23.899 hybrid contribution 2.458 -2.500 0.230 3.513 sum 0.631 5.295 22.747 23.364 Atomic orbital electron populations 1.20356 0.86483 1.03963 1.03118 1.22144 0.97014 0.89637 0.97383 1.77352 0.85984 1.22468 1.26508 1.48266 1.05746 1.03928 1.57574 1.21837 0.83906 0.95024 1.03186 1.20708 0.96493 0.84828 1.00531 1.20524 0.93090 0.98482 1.03336 1.19169 0.91408 0.94557 1.19771 1.21066 0.89134 0.91874 0.88106 0.90706 1.89177 1.41139 1.42761 1.54578 1.23436 0.98570 0.87830 0.93518 1.23392 0.99698 1.01536 0.96161 1.22264 0.87807 0.95754 0.92308 0.87775 1.45979 1.30857 1.55111 1.06440 1.20312 0.86023 0.80272 0.81414 1.90708 1.37011 1.42471 1.68425 1.23531 0.99747 1.02353 1.04744 1.85432 1.39062 1.68956 0.89768 1.22823 1.13915 1.37394 0.94390 0.90996 1.24985 0.96981 0.95721 0.95835 1.70006 1.35380 1.41407 1.03460 0.86234 0.81422 0.80090 0.77808 1.19923 1.20802 1.19954 0.90645 0.88750 0.91338 0.90809 0.89458 0.89202 0.89942 0.89600 0.90675 0.88762 0.92144 0.89784 0.89720 0.77031 0.89325 0.89202 0.92106 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.91 10.23 36.00 0.37 -0.54 16 2 C 0.10 1.43 7.17 -82.41 -0.59 0.83 16 3 N -0.30 -4.34 12.58 33.67 0.42 -3.92 16 4 N -0.37 -4.47 4.01 -63.88 -0.26 -4.72 16 5 C 0.10 0.76 11.28 59.85 0.67 1.44 16 6 C 0.10 1.16 6.93 -82.27 -0.57 0.59 16 7 C -0.10 -0.72 9.69 36.00 0.35 -0.37 16 8 C -0.24 -2.97 5.04 -105.05 -0.53 -3.50 16 9 C 0.16 1.70 3.12 -27.11 -0.08 1.61 16 10 H 0.08 0.67 6.91 -51.93 -0.36 0.32 16 11 O -0.36 -3.86 9.05 -35.23 -0.32 -4.18 16 12 C 0.04 0.37 7.63 37.94 0.29 0.66 16 13 C -0.17 -1.78 6.88 -25.16 -0.17 -1.95 16 14 C 0.13 1.54 3.01 -66.37 -0.20 1.34 16 15 H 0.10 1.61 7.28 -51.93 -0.38 1.23 16 16 N -0.73 -9.36 5.06 -52.29 -0.26 -9.62 16 17 C 0.53 9.67 7.85 -10.98 -0.09 9.58 16 18 O -0.51 -11.52 15.51 5.56 0.09 -11.43 16 19 C -0.15 -2.99 6.16 36.01 0.22 -2.77 16 20 S -0.06 -1.58 20.57 -107.50 -2.21 -3.79 16 21 C -0.54 -15.10 9.50 30.94 0.29 -14.81 16 22 H 0.07 1.90 7.80 -52.48 -0.41 1.49 16 23 C 0.07 2.10 5.49 -17.43 -0.10 2.00 16 24 N -0.87 -26.00 13.22 55.49 0.73 -25.27 16 25 Si 0.92 21.14 29.55 -169.99 -5.02 16.12 16 26 H -0.27 -6.14 7.11 56.52 0.40 -5.74 16 27 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 28 H -0.27 -6.14 7.11 56.52 0.40 -5.74 16 29 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 30 H 0.09 1.00 5.95 -51.93 -0.31 0.69 16 31 H 0.07 0.70 8.14 -51.93 -0.42 0.27 16 32 H 0.07 0.43 8.14 -51.93 -0.42 0.00 16 33 H 0.09 0.48 7.04 -51.93 -0.37 0.11 16 34 H 0.09 0.65 8.14 -51.92 -0.42 0.23 16 35 H 0.08 0.48 8.14 -51.93 -0.42 0.06 16 36 H 0.09 0.60 7.50 -51.93 -0.39 0.22 16 37 H 0.07 0.48 7.07 -51.93 -0.37 0.11 16 38 H 0.09 0.66 8.14 -51.93 -0.42 0.24 16 39 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 40 H 0.08 0.91 8.14 -51.93 -0.42 0.48 16 41 H 0.08 0.91 7.97 -51.93 -0.41 0.50 16 42 H 0.40 3.78 8.39 -40.82 -0.34 3.44 16 43 H 0.09 1.58 8.14 -51.91 -0.42 1.16 16 44 H 0.09 1.60 8.14 -51.92 -0.42 1.18 16 45 H 0.27 7.52 8.31 -40.82 -0.34 7.18 16 LS Contribution 386.48 15.07 5.82 5.82 Total: -1.00 -37.19 386.48 -7.84 -45.02 By element: Atomic # 1 Polarization: 8.53 SS G_CDS: -6.70 Total: 1.83 kcal Atomic # 6 Polarization: -5.74 SS G_CDS: -0.13 Total: -5.88 kcal Atomic # 7 Polarization: -44.17 SS G_CDS: 0.64 Total: -43.53 kcal Atomic # 8 Polarization: -15.37 SS G_CDS: -0.23 Total: -15.61 kcal Atomic # 14 Polarization: 21.14 SS G_CDS: -5.02 Total: 16.12 kcal Atomic # 16 Polarization: -1.58 SS G_CDS: -2.21 Total: -3.79 kcal Total LS contribution 5.82 Total: 5.82 kcal Total: -37.19 -7.84 -45.02 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000332329078.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.264 kcal (2) G-P(sol) polarization free energy of solvation -37.188 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.075 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.836 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.024 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.760 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds