Wall clock time and date at job start Tue Mar 31 2020 23:27:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 N 1.30832 * 125.89900 * 2 1 4 4 N 1.40085 * 108.20599 * 180.02562 * 3 2 1 5 5 C 1.46500 * 126.03813 * 179.74170 * 4 3 2 6 6 C 1.34943 * 107.92716 * 0.02562 * 4 3 2 7 7 C 1.50697 * 126.13122 * 180.02562 * 6 4 3 8 8 C 1.35316 * 107.74531 * 359.97438 * 6 4 3 9 9 C 1.50700 * 126.04188 * 180.02562 * 8 6 4 10 10 H 1.09002 * 110.33347 * 17.25152 * 9 8 6 11 11 O 1.44429 * 110.37175 * 139.61840 * 9 8 6 12 12 C 1.44428 * 105.27147 * 159.34512 * 11 9 8 13 13 C 1.54482 * 104.80315 * 319.48553 * 12 11 9 14 14 C 1.54479 * 110.37461 * 255.00239 * 9 8 6 15 15 H 1.09005 * 110.50730 * 335.83481 * 14 9 8 16 16 N 1.46498 * 110.51228 * 98.40492 * 14 9 8 17 17 C 1.34777 * 119.99875 * 205.00218 * 16 14 9 18 18 O 1.21276 * 120.00185 * 359.97438 * 17 16 14 19 19 C 1.50703 * 119.99462 * 180.02562 * 17 16 14 20 20 S 1.80999 * 109.46835 * 180.02562 * 19 17 16 21 21 C 1.76198 * 100.00341 * 179.97438 * 20 19 17 22 22 H 1.08003 * 119.99449 * 359.97438 * 21 20 19 23 23 C 1.38790 * 120.00271 * 180.02562 * 21 20 19 24 24 N 1.31632 * 120.00410 * 359.97438 * 23 21 20 25 25 Si 1.86805 * 119.99949 * 179.97438 * 23 21 20 26 26 H 1.48501 * 109.46896 * 60.00431 * 25 23 21 27 27 H 1.48501 * 109.47133 * 179.97438 * 25 23 21 28 28 H 1.48494 * 109.47317 * 299.99922 * 25 23 21 29 29 H 1.08996 * 109.47459 * 89.97393 * 1 2 3 30 30 H 1.09004 * 109.47206 * 209.97278 * 1 2 3 31 31 H 1.09000 * 109.47294 * 329.97162 * 1 2 3 32 32 H 1.08997 * 109.47763 * 90.01881 * 5 4 3 33 33 H 1.09004 * 109.47211 * 210.02331 * 5 4 3 34 34 H 1.09012 * 109.46942 * 330.02017 * 5 4 3 35 35 H 1.09001 * 109.47870 * 90.01729 * 7 6 4 36 36 H 1.09003 * 109.47509 * 210.02274 * 7 6 4 37 37 H 1.09004 * 109.47023 * 330.01818 * 7 6 4 38 38 H 1.09001 * 110.37014 * 200.65911 * 12 11 9 39 39 H 1.08999 * 110.37407 * 78.32579 * 12 11 9 40 40 H 1.08996 * 110.51153 * 265.33494 * 13 12 11 41 41 H 1.09002 * 110.62287 * 142.68272 * 13 12 11 42 42 H 0.97005 * 119.99700 * 25.00385 * 16 14 9 43 43 H 1.09001 * 109.46900 * 299.98973 * 19 17 16 44 44 H 1.08999 * 109.47536 * 59.99658 * 19 17 16 45 45 H 0.96998 * 120.00222 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2741 1.0598 0.0000 4 7 3.6087 0.6341 -0.0006 5 6 4.7899 1.5007 -0.0061 6 6 3.6142 -0.7153 -0.0015 7 6 4.8350 -1.5989 -0.0019 8 6 2.3271 -1.1330 -0.0009 9 6 1.8599 -2.5658 -0.0011 10 1 2.6706 -3.2286 0.3014 11 8 0.7239 -2.7242 0.8767 12 6 0.0714 -3.9362 0.4394 13 6 0.1324 -3.8827 -1.1033 14 6 1.3361 -2.9605 -1.3997 15 1 1.0136 -2.0767 -1.9502 16 7 2.3673 -3.6825 -2.1491 17 6 2.3462 -3.6812 -3.4967 18 8 1.4734 -3.0827 -4.0889 19 6 3.4067 -4.4244 -4.2675 20 16 3.1077 -4.2335 -6.0424 21 6 4.4541 -5.1729 -6.6823 22 1 5.1498 -5.6485 -6.0070 23 6 4.6210 -5.3007 -8.0542 24 7 3.7734 -4.7205 -8.8774 25 14 6.0489 -6.2960 -8.7326 26 1 5.9482 -7.6973 -8.2514 27 1 6.0035 -6.2785 -10.2168 28 1 7.3294 -5.7042 -8.2690 29 1 -0.3634 0.0005 -1.0276 30 1 -0.3634 -0.8903 0.5134 31 1 -0.3634 0.8897 0.5143 32 1 5.0849 1.7196 1.0201 33 1 5.6083 0.9962 -0.5197 34 1 4.5552 2.4314 -0.5231 35 1 5.1290 -1.8130 1.0257 36 1 4.6078 -2.5324 -0.5167 37 1 5.6514 -1.0905 -0.5149 38 1 -0.9646 -3.9526 0.7778 39 1 0.6065 -4.8104 0.8103 40 1 -0.7851 -3.4549 -1.5072 41 1 0.3027 -4.8773 -1.5155 42 1 3.0652 -4.1615 -1.6753 43 1 4.3876 -4.0190 -4.0191 44 1 3.3733 -5.4817 -4.0046 45 1 3.8903 -4.8096 -9.8361 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000332329078.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:27:32 Heat of formation + Delta-G solvation = -34.592283 kcal Electronic energy + Delta-G solvation = -27510.624975 eV Core-core repulsion = 23654.968026 eV Total energy + Delta-G solvation = -3855.656949 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -42.52794 -41.03734 -39.68543 -35.65101 -35.11328 -34.57042 -33.55013 -32.29426 -30.68485 -30.38347 -29.54441 -27.67317 -27.26239 -26.05552 -23.78774 -22.72352 -21.49761 -20.76922 -20.48450 -19.81776 -17.99587 -17.92517 -17.55616 -16.86586 -16.75920 -16.65702 -16.24598 -16.14165 -15.90347 -15.38826 -14.74356 -14.65175 -14.61299 -14.45339 -14.33073 -14.04114 -13.87944 -13.79629 -13.60722 -13.40400 -13.15767 -13.07987 -12.90420 -12.85373 -12.76944 -12.69975 -12.59767 -12.26189 -11.86968 -11.73167 -11.53283 -11.11543 -10.95512 -10.69103 -10.25318 -10.21024 -10.03432 -9.27042 -8.65402 -8.33146 -6.11346 0.83459 1.27362 1.44880 1.47693 1.56586 1.57770 1.60457 1.63128 2.19779 2.29235 3.01108 3.04234 3.34481 3.51778 3.65732 3.67635 3.79842 3.95082 4.02565 4.10900 4.18014 4.25722 4.29080 4.32937 4.36227 4.40924 4.52525 4.55650 4.60063 4.71681 4.74540 4.77018 4.91167 4.95921 5.01934 5.05282 5.06884 5.10770 5.25319 5.39423 5.42971 5.70009 5.88114 6.11204 6.20880 6.49696 6.72799 7.08126 7.26101 8.75742 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.013633 B = 0.002863 C = 0.002591 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2053.288510 B = 9776.968371 C =10802.620264 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 C 0.083 3.917 3 N -0.342 5.342 4 N -0.380 5.380 5 C 0.092 3.908 6 C 0.102 3.898 7 C -0.097 4.097 8 C -0.264 4.264 9 C 0.170 3.830 10 H 0.102 0.898 11 O -0.369 6.369 12 C 0.049 3.951 13 C -0.167 4.167 14 C 0.124 3.876 15 H 0.067 0.933 16 N -0.700 5.700 17 C 0.537 3.463 18 O -0.565 6.565 19 C -0.127 4.127 20 S -0.155 6.155 21 C -0.545 4.545 22 H 0.085 0.915 23 C 0.013 3.987 24 N -0.913 5.913 25 Si 0.998 3.002 26 H -0.261 1.261 27 H -0.281 1.281 28 H -0.261 1.261 29 H 0.068 0.932 30 H 0.100 0.900 31 H 0.073 0.927 32 H 0.092 0.908 33 H 0.110 0.890 34 H 0.086 0.914 35 H 0.105 0.895 36 H 0.093 0.907 37 H 0.088 0.912 38 H 0.111 0.889 39 H 0.083 0.917 40 H 0.074 0.926 41 H 0.085 0.915 42 H 0.417 0.583 43 H 0.112 0.888 44 H 0.114 0.886 45 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.044 3.230 25.791 26.073 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.082 4.082 3 N -0.165 5.165 4 N -0.162 5.162 5 C -0.048 4.048 6 C -0.027 4.027 7 C -0.155 4.155 8 C -0.276 4.276 9 C 0.111 3.889 10 H 0.120 0.880 11 O -0.288 6.288 12 C -0.028 4.028 13 C -0.206 4.206 14 C 0.018 3.982 15 H 0.086 0.914 16 N -0.355 5.355 17 C 0.323 3.677 18 O -0.442 6.442 19 C -0.278 4.278 20 S 0.072 5.928 21 C -0.693 4.693 22 H 0.103 0.897 23 C -0.192 4.192 24 N -0.549 5.549 25 Si 0.819 3.181 26 H -0.185 1.185 27 H -0.207 1.207 28 H -0.185 1.185 29 H 0.086 0.914 30 H 0.119 0.881 31 H 0.092 0.908 32 H 0.111 0.889 33 H 0.129 0.871 34 H 0.104 0.896 35 H 0.123 0.877 36 H 0.111 0.889 37 H 0.106 0.894 38 H 0.129 0.871 39 H 0.101 0.899 40 H 0.093 0.907 41 H 0.104 0.896 42 H 0.255 0.745 43 H 0.130 0.870 44 H 0.132 0.868 45 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 0.660 5.813 24.848 25.527 hybrid contribution 1.675 -1.813 -0.351 2.493 sum 2.335 4.001 24.497 24.931 Atomic orbital electron populations 1.20342 0.85861 1.04482 1.02774 1.22527 0.97878 0.90277 0.97560 1.77253 0.87569 1.23567 1.28101 1.48646 1.05748 1.04865 1.56898 1.22172 0.83125 0.94759 1.04753 1.21365 0.97534 0.85003 0.98781 1.20710 0.91662 0.97981 1.05102 1.19499 0.91967 0.95116 1.20970 1.20990 0.89772 0.91466 0.86698 0.88022 1.89178 1.41345 1.43913 1.54341 1.23566 0.99879 0.87800 0.91508 1.23349 0.98337 1.00810 0.98091 1.22262 0.88401 0.94818 0.92697 0.91444 1.45627 1.31225 1.54012 1.04602 1.20092 0.85058 0.79695 0.82848 1.90703 1.38900 1.44798 1.69820 1.23359 1.01225 1.04241 0.99011 1.85666 1.40378 1.69745 0.96991 1.23179 1.13856 1.37187 0.95079 0.89678 1.26126 1.00016 0.96812 0.96199 1.70185 1.37729 1.43243 1.03766 0.85016 0.77588 0.78621 0.76856 1.18540 1.20661 1.18547 0.91355 0.88139 0.90836 0.88929 0.87127 0.89554 0.87658 0.88861 0.89365 0.87091 0.89854 0.90749 0.89635 0.74516 0.87021 0.86820 0.92071 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.79 10.23 71.24 0.73 -1.06 16 2 C 0.08 2.31 7.17 43.10 0.31 2.62 16 3 N -0.34 -10.07 12.58 -47.39 -0.60 -10.66 16 4 N -0.38 -8.79 4.01 -356.02 -1.43 -10.22 16 5 C 0.09 1.24 11.28 127.77 1.44 2.68 16 6 C 0.10 2.14 6.93 41.41 0.29 2.43 16 7 C -0.10 -1.11 9.69 71.23 0.69 -0.42 16 8 C -0.26 -6.38 5.04 -20.14 -0.10 -6.48 16 9 C 0.17 3.32 3.12 30.35 0.09 3.42 16 10 H 0.10 1.43 6.91 -2.39 -0.02 1.42 16 11 O -0.37 -7.19 9.05 -148.98 -1.35 -8.54 16 12 C 0.05 0.70 7.63 72.49 0.55 1.25 16 13 C -0.17 -3.31 6.88 31.61 0.22 -3.10 16 14 C 0.12 2.95 3.01 46.01 0.14 3.09 16 15 H 0.07 2.16 7.28 -2.38 -0.02 2.15 16 16 N -0.70 -16.61 5.06 -437.73 -2.21 -18.82 16 17 C 0.54 19.11 7.85 87.66 0.69 19.80 16 18 O -0.56 -26.14 15.51 -3.02 -0.05 -26.18 16 19 C -0.13 -4.78 6.16 71.24 0.44 -4.34 16 20 S -0.15 -8.47 20.57 -56.49 -1.16 -9.63 16 21 C -0.55 -30.49 9.50 67.95 0.65 -29.85 16 22 H 0.09 4.35 7.80 -2.91 -0.02 4.33 16 23 C 0.01 0.74 5.49 84.85 0.47 1.20 16 24 N -0.91 -55.81 13.22 21.65 0.29 -55.53 16 25 Si 1.00 42.76 29.55 68.60 2.03 44.79 16 26 H -0.26 -10.55 7.11 99.48 0.71 -9.84 16 27 H -0.28 -11.87 7.11 99.48 0.71 -11.16 16 28 H -0.26 -10.54 7.11 99.48 0.71 -9.83 16 29 H 0.07 1.65 8.14 -2.39 -0.02 1.63 16 30 H 0.10 2.16 5.95 -2.39 -0.01 2.14 16 31 H 0.07 1.57 8.14 -2.39 -0.02 1.55 16 32 H 0.09 0.90 8.14 -2.39 -0.02 0.88 16 33 H 0.11 0.94 7.04 -2.39 -0.02 0.93 16 34 H 0.09 1.22 8.14 -2.38 -0.02 1.20 16 35 H 0.11 0.77 8.14 -2.39 -0.02 0.75 16 36 H 0.09 0.93 7.50 -2.39 -0.02 0.92 16 37 H 0.09 0.80 7.07 -2.38 -0.02 0.78 16 38 H 0.11 1.25 8.14 -2.39 -0.02 1.23 16 39 H 0.08 0.87 8.14 -2.39 -0.02 0.85 16 40 H 0.07 1.61 8.14 -2.39 -0.02 1.60 16 41 H 0.09 1.69 7.97 -2.39 -0.02 1.67 16 42 H 0.42 6.43 8.39 -92.70 -0.78 5.65 16 43 H 0.11 3.70 8.14 -2.40 -0.02 3.68 16 44 H 0.11 3.75 8.14 -2.40 -0.02 3.73 16 45 H 0.27 15.41 8.31 -92.71 -0.77 14.64 16 Total: -1.00 -84.99 386.48 2.35 -82.64 By element: Atomic # 1 Polarization: 20.65 SS G_CDS: 0.24 Total: 20.89 kcal Atomic # 6 Polarization: -15.33 SS G_CDS: 6.60 Total: -8.74 kcal Atomic # 7 Polarization: -91.27 SS G_CDS: -3.95 Total: -95.23 kcal Atomic # 8 Polarization: -33.33 SS G_CDS: -1.40 Total: -34.72 kcal Atomic # 14 Polarization: 42.76 SS G_CDS: 2.03 Total: 44.79 kcal Atomic # 16 Polarization: -8.47 SS G_CDS: -1.16 Total: -9.63 kcal Total: -84.99 2.35 -82.64 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000332329078.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.052 kcal (2) G-P(sol) polarization free energy of solvation -84.994 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.942 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.350 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.644 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.592 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds