Wall clock time and date at job start Tue Mar 31 2020 22:29:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31523 * 1 3 3 Si 1.86807 * 119.99566 * 2 1 4 4 H 1.48499 * 109.46590 * 239.99850 * 3 2 1 5 5 H 1.48508 * 109.47136 * 359.97438 * 3 2 1 6 6 H 1.48491 * 109.47323 * 119.99891 * 3 2 1 7 7 C 1.37872 * 120.00525 * 179.97438 * 2 1 3 8 8 H 1.07993 * 120.00349 * 180.02562 * 7 2 1 9 9 C 1.50704 * 119.99786 * 0.02562 * 7 2 1 10 10 N 1.46893 * 109.47104 * 176.44224 * 9 7 2 11 11 C 1.46897 * 111.00058 * 288.53511 * 10 9 7 12 12 C 1.53002 * 109.47474 * 160.40029 * 11 10 9 13 13 N 1.46496 * 109.47784 * 185.06904 * 12 11 10 14 14 C 1.47065 * 126.29797 * 274.69155 * 13 12 11 15 15 C 1.54318 * 109.96580 * 150.90148 * 14 13 12 16 16 C 1.55600 * 104.19454 * 45.50557 * 15 14 13 17 17 S 1.67000 * 126.30343 * 94.99750 * 13 12 11 18 18 O 1.42107 * 105.13387 * 298.89409 * 17 13 12 19 19 O 1.42100 * 105.13272 * 68.56948 * 17 13 12 20 20 C 1.46900 * 111.00052 * 164.58110 * 10 9 7 21 21 C 1.50697 * 109.47510 * 293.95359 * 20 10 9 22 22 C 1.38232 * 119.61739 * 95.01727 * 21 20 10 23 23 C 1.38627 * 119.15882 * 179.75080 * 22 21 20 24 24 C 1.38678 * 118.42113 * 0.47410 * 23 22 21 25 25 C 1.38176 * 119.16289 * 359.50710 * 24 23 22 26 26 N 1.31855 * 119.61760 * 275.00592 * 21 20 10 27 27 H 0.96997 * 119.99976 * 0.02562 * 1 2 3 28 28 H 1.09004 * 109.47096 * 56.44138 * 9 7 2 29 29 H 1.08998 * 109.46845 * 296.44388 * 9 7 2 30 30 H 1.08998 * 109.47438 * 280.39970 * 11 10 9 31 31 H 1.09004 * 109.47288 * 40.40422 * 11 10 9 32 32 H 1.09005 * 109.47224 * 305.07377 * 12 11 10 33 33 H 1.09001 * 109.46798 * 65.06276 * 12 11 10 34 34 H 1.09001 * 109.35775 * 271.17959 * 14 13 12 35 35 H 1.08998 * 109.36164 * 30.82511 * 14 13 12 36 36 H 1.09004 * 110.65264 * 286.76937 * 15 14 13 37 37 H 1.09002 * 110.38415 * 164.11230 * 15 14 13 38 38 H 1.09001 * 111.16851 * 204.05737 * 16 15 14 39 39 H 1.09007 * 111.16662 * 79.79155 * 16 15 14 40 40 H 1.09004 * 109.47184 * 173.94926 * 20 10 9 41 41 H 1.09003 * 109.46721 * 53.95714 * 20 10 9 42 42 H 1.08000 * 120.41854 * 359.95954 * 22 21 20 43 43 H 1.07996 * 120.78979 * 180.23487 * 23 22 21 44 44 H 1.07996 * 120.41947 * 179.78445 * 24 23 22 45 45 H 1.07994 * 119.61940 * 180.24992 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6179 0.0000 4 1 3.1029 1.6965 -1.2125 5 1 1.2840 2.7466 -0.0006 6 1 3.1028 1.6966 1.2124 7 6 2.0047 -1.1939 0.0005 8 1 3.0846 -1.1939 0.0010 9 6 1.2512 -2.4991 0.0005 10 7 2.2036 -3.6143 -0.0848 11 6 2.8066 -3.6904 -1.4221 12 6 4.1022 -4.5013 -1.3520 13 7 4.7657 -4.4757 -2.6579 14 6 4.4975 -5.3773 -3.7884 15 6 4.7934 -4.6553 -5.1198 16 6 6.1625 -3.9564 -4.8788 17 16 5.9707 -3.4222 -3.1343 18 8 5.3866 -2.1293 -3.0530 19 8 7.1055 -3.7811 -2.3580 20 6 1.5603 -4.8847 0.2757 21 6 1.1717 -4.8558 1.7314 22 6 -0.1105 -4.4830 2.0889 23 6 -0.4593 -4.4648 3.4305 24 6 0.5018 -4.8141 4.3672 25 6 1.7631 -5.1762 3.9347 26 7 2.0585 -5.1866 2.6493 27 1 -0.4850 0.8400 -0.0004 28 1 0.5779 -2.5300 -0.8561 29 1 0.6729 -2.5847 0.9205 30 1 2.1112 -4.1753 -2.1072 31 1 3.0266 -2.6843 -1.7793 32 1 4.7621 -4.0675 -0.6006 33 1 3.8717 -5.5317 -1.0816 34 1 5.1311 -6.2603 -3.7046 35 1 3.4511 -5.6816 -3.7676 36 1 4.0214 -3.9168 -5.3365 37 1 4.8715 -5.3763 -5.9335 38 1 6.2893 -3.1000 -5.5410 39 1 6.9880 -4.6602 -4.9864 40 1 2.2552 -5.7062 0.1014 41 1 0.6690 -5.0269 -0.3356 42 1 -0.8324 -4.2127 1.3325 43 1 -1.4547 -4.1814 3.7391 44 1 0.2660 -4.8076 5.4211 45 1 2.5160 -5.4536 4.6576 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000336839369.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:29:04 Heat of formation + Delta-G solvation = -11.588932 kcal Electronic energy + Delta-G solvation = -27888.434770 eV Core-core repulsion = 24033.775321 eV Total energy + Delta-G solvation = -3854.659448 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -39.81165 -37.71283 -36.86760 -36.53930 -35.68413 -33.34138 -32.59339 -32.01149 -31.16609 -28.52389 -27.35900 -26.19915 -24.69084 -23.18618 -22.59348 -21.96816 -21.76930 -19.86954 -18.74848 -17.23031 -16.86042 -16.51324 -16.30182 -15.84007 -15.71926 -15.31063 -14.83121 -14.71687 -14.53701 -14.40519 -13.99689 -13.73198 -13.51653 -13.18596 -13.05835 -12.83854 -12.66643 -12.29720 -12.06219 -11.96012 -11.87209 -11.79244 -11.76242 -11.47888 -11.33983 -11.09837 -10.91361 -10.65045 -10.58533 -10.50344 -10.12636 -9.84920 -9.48142 -9.15577 -9.00418 -8.85271 -8.56725 -8.31044 -7.28109 -5.95276 -3.94553 0.25565 1.50474 1.70254 2.57203 3.44403 3.44899 3.53082 3.67947 3.81859 4.14787 4.18442 4.39572 4.53887 4.71090 4.76318 4.87039 5.01555 5.15594 5.16697 5.24335 5.26641 5.38021 5.41018 5.42504 5.50855 5.55442 5.61209 5.74330 5.82050 5.84549 5.98560 5.99807 6.09843 6.19890 6.42355 6.50979 6.56022 6.60516 6.91184 7.08278 7.28137 7.32790 7.88826 8.10432 8.18916 8.45699 8.57792 9.13481 9.69592 11.15269 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.009018 B = 0.004281 C = 0.003249 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3104.319899 B = 6538.371372 C = 8616.849855 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.902 5.902 2 C 0.057 3.943 3 Si 0.893 3.107 4 H -0.273 1.273 5 H -0.289 1.289 6 H -0.277 1.277 7 C -0.501 4.501 8 H 0.064 0.936 9 C 0.190 3.810 10 N -0.526 5.526 11 C 0.041 3.959 12 C 0.163 3.837 13 N -0.987 5.987 14 C 0.080 3.920 15 C -0.126 4.126 16 C -0.605 4.605 17 S 2.567 3.433 18 O -0.940 6.940 19 O -0.960 6.960 20 C 0.100 3.900 21 C 0.154 3.846 22 C -0.154 4.154 23 C -0.078 4.078 24 C -0.184 4.184 25 C 0.093 3.907 26 N -0.469 5.469 27 H 0.260 0.740 28 H -0.005 1.005 29 H 0.035 0.965 30 H 0.025 0.975 31 H 0.099 0.901 32 H 0.087 0.913 33 H 0.073 0.927 34 H 0.072 0.928 35 H 0.092 0.908 36 H 0.096 0.904 37 H 0.106 0.894 38 H 0.138 0.862 39 H 0.137 0.863 40 H 0.079 0.921 41 H 0.039 0.961 42 H 0.132 0.868 43 H 0.129 0.871 44 H 0.127 0.873 45 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.734 -14.747 -6.370 16.747 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.542 5.542 2 C -0.144 4.144 3 Si 0.720 3.280 4 H -0.199 1.199 5 H -0.215 1.215 6 H -0.202 1.202 7 C -0.540 4.540 8 H 0.082 0.918 9 C 0.065 3.935 10 N -0.251 5.251 11 C -0.089 4.089 12 C 0.039 3.961 13 N -0.829 5.829 14 C -0.047 4.047 15 C -0.165 4.165 16 C -0.735 4.735 17 S 2.662 3.338 18 O -0.929 6.929 19 O -0.950 6.950 20 C -0.029 4.029 21 C 0.015 3.985 22 C -0.174 4.174 23 C -0.104 4.104 24 C -0.204 4.204 25 C -0.064 4.064 26 N -0.178 5.178 27 H 0.069 0.931 28 H 0.012 0.988 29 H 0.053 0.947 30 H 0.043 0.957 31 H 0.117 0.883 32 H 0.106 0.894 33 H 0.091 0.909 34 H 0.090 0.910 35 H 0.110 0.890 36 H 0.114 0.886 37 H 0.124 0.876 38 H 0.156 0.844 39 H 0.155 0.845 40 H 0.097 0.903 41 H 0.057 0.943 42 H 0.150 0.850 43 H 0.147 0.853 44 H 0.145 0.855 45 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges 6.220 -14.060 -5.644 16.378 hybrid contribution -1.415 0.770 -0.793 1.796 sum 4.805 -13.289 -6.438 15.529 Atomic orbital electron populations 1.69944 1.05973 1.26710 1.51604 1.24924 0.94820 0.99177 0.95457 0.86628 0.79547 0.82761 0.79027 1.19864 1.21477 1.20211 1.21134 0.93714 0.89757 1.49392 0.91759 1.19862 0.89934 0.87250 0.96461 1.61972 1.35265 1.02281 1.25628 1.22501 0.94241 1.02250 0.89898 1.21118 0.94417 1.00772 0.79769 1.57240 1.56347 1.49419 1.19928 1.22058 1.04534 0.93829 0.84283 1.22691 0.93932 1.01367 0.98526 1.30896 1.05616 1.11983 1.25016 1.06627 0.74723 0.74709 0.77779 1.93693 1.75912 1.38191 1.85106 1.93599 1.51437 1.83644 1.66275 1.20972 0.97835 0.94851 0.89222 1.21087 0.88988 0.92752 0.95648 1.22022 0.98127 1.00166 0.97075 1.21492 0.99593 0.96237 0.93049 1.22020 0.95304 1.02765 1.00336 1.22644 0.95012 0.96180 0.92559 1.67450 1.34947 1.13899 1.01509 0.93064 0.98764 0.94660 0.95693 0.88258 0.89440 0.90916 0.90991 0.88983 0.88578 0.87568 0.84377 0.84453 0.90260 0.94255 0.84987 0.85318 0.85484 0.83350 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.06 13.29 55.43 0.74 -26.32 16 2 C 0.06 1.67 5.46 -17.82 -0.10 1.57 16 3 Si 0.89 22.95 29.54 -169.99 -5.02 17.92 16 4 H -0.27 -7.05 7.11 56.52 0.40 -6.65 16 5 H -0.29 -7.23 7.11 56.52 0.40 -6.83 16 6 H -0.28 -7.06 7.11 56.52 0.40 -6.66 16 7 C -0.50 -14.59 8.29 -34.44 -0.29 -14.88 16 8 H 0.06 1.92 7.76 -52.49 -0.41 1.51 16 9 C 0.19 4.91 4.57 -4.98 -0.02 4.88 16 10 N -0.53 -11.30 4.38 -237.52 -1.04 -12.34 16 11 C 0.04 0.78 5.15 -3.82 -0.02 0.76 16 12 C 0.16 2.60 6.38 -4.04 -0.03 2.57 16 13 N -0.99 -13.14 3.31 -113.19 -0.38 -13.52 16 14 C 0.08 0.69 6.83 -3.04 -0.02 0.67 16 15 C -0.13 -0.87 6.81 -24.66 -0.17 -1.04 16 16 C -0.61 -4.74 7.51 38.54 0.29 -4.45 16 17 S 2.57 35.88 6.17 -107.50 -0.66 35.22 16 18 O -0.94 -17.72 18.14 -57.41 -1.04 -18.77 16 19 O -0.96 -16.30 18.13 -57.41 -1.04 -17.34 16 20 C 0.10 1.79 5.11 -4.98 -0.03 1.76 16 21 C 0.15 2.83 5.69 -82.59 -0.47 2.36 16 22 C -0.15 -2.65 8.03 -39.44 -0.32 -2.97 16 23 C -0.08 -1.17 10.18 -39.28 -0.40 -1.57 16 24 C -0.18 -2.57 10.11 -39.44 -0.40 -2.97 16 25 C 0.09 1.43 11.18 -17.55 -0.20 1.23 16 26 N -0.47 -8.57 10.27 -9.47 -0.10 -8.66 16 27 H 0.26 7.43 8.31 -40.82 -0.34 7.09 16 28 H -0.01 -0.15 8.06 -51.93 -0.42 -0.57 16 29 H 0.04 0.96 5.57 -51.93 -0.29 0.67 16 30 H 0.02 0.43 8.00 -51.93 -0.42 0.02 16 31 H 0.10 2.26 7.07 -51.93 -0.37 1.89 16 32 H 0.09 1.55 8.14 -51.93 -0.42 1.13 16 33 H 0.07 0.99 6.95 -51.93 -0.36 0.63 16 34 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 35 H 0.09 0.73 8.14 -51.93 -0.42 0.30 16 36 H 0.10 0.71 8.14 -51.93 -0.42 0.28 16 37 H 0.11 0.45 8.14 -51.93 -0.42 0.02 16 38 H 0.14 0.88 8.14 -51.93 -0.42 0.46 16 39 H 0.14 0.79 8.14 -51.92 -0.42 0.37 16 40 H 0.08 1.25 6.71 -51.93 -0.35 0.91 16 41 H 0.04 0.66 8.02 -51.93 -0.42 0.24 16 42 H 0.13 2.23 8.01 -52.49 -0.42 1.80 16 43 H 0.13 1.59 8.06 -52.49 -0.42 1.17 16 44 H 0.13 1.35 8.06 -52.49 -0.42 0.93 16 45 H 0.15 1.80 8.06 -52.49 -0.42 1.38 16 LS Contribution 381.49 15.07 5.75 5.75 Total: -1.00 -38.19 381.49 -11.76 -49.95 By element: Atomic # 1 Polarization: 6.97 SS G_CDS: -6.81 Total: 0.17 kcal Atomic # 6 Polarization: -9.91 SS G_CDS: -2.16 Total: -12.06 kcal Atomic # 7 Polarization: -60.07 SS G_CDS: -0.78 Total: -60.84 kcal Atomic # 8 Polarization: -34.02 SS G_CDS: -2.08 Total: -36.10 kcal Atomic # 14 Polarization: 22.95 SS G_CDS: -5.02 Total: 17.92 kcal Atomic # 16 Polarization: 35.88 SS G_CDS: -0.66 Total: 35.22 kcal Total LS contribution 5.75 Total: 5.75 kcal Total: -38.19 -11.76 -49.95 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000336839369.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.363 kcal (2) G-P(sol) polarization free energy of solvation -38.194 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.169 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.758 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -49.952 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.589 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds