Wall clock time and date at job start Tue Mar 31 2020 22:29:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31523 * 1 3 3 Si 1.86807 * 119.99566 * 2 1 4 4 H 1.48499 * 109.46590 * 239.99850 * 3 2 1 5 5 H 1.48508 * 109.47136 * 359.97438 * 3 2 1 6 6 H 1.48491 * 109.47323 * 119.99891 * 3 2 1 7 7 C 1.37872 * 120.00525 * 179.97438 * 2 1 3 8 8 H 1.07993 * 120.00349 * 180.02562 * 7 2 1 9 9 C 1.50704 * 119.99786 * 0.02562 * 7 2 1 10 10 N 1.46893 * 109.47104 * 176.44224 * 9 7 2 11 11 C 1.46897 * 111.00058 * 288.53511 * 10 9 7 12 12 C 1.53002 * 109.47474 * 160.40029 * 11 10 9 13 13 N 1.46496 * 109.47784 * 185.06904 * 12 11 10 14 14 C 1.47065 * 126.29797 * 274.69155 * 13 12 11 15 15 C 1.54318 * 109.96580 * 150.90148 * 14 13 12 16 16 C 1.55600 * 104.19454 * 45.50557 * 15 14 13 17 17 S 1.67000 * 126.30343 * 94.99750 * 13 12 11 18 18 O 1.42107 * 105.13387 * 298.89409 * 17 13 12 19 19 O 1.42100 * 105.13272 * 68.56948 * 17 13 12 20 20 C 1.46900 * 111.00052 * 164.58110 * 10 9 7 21 21 C 1.50697 * 109.47510 * 293.95359 * 20 10 9 22 22 C 1.38232 * 119.61739 * 95.01727 * 21 20 10 23 23 C 1.38627 * 119.15882 * 179.75080 * 22 21 20 24 24 C 1.38678 * 118.42113 * 0.47410 * 23 22 21 25 25 C 1.38176 * 119.16289 * 359.50710 * 24 23 22 26 26 N 1.31855 * 119.61760 * 275.00592 * 21 20 10 27 27 H 0.96997 * 119.99976 * 0.02562 * 1 2 3 28 28 H 1.09004 * 109.47096 * 56.44138 * 9 7 2 29 29 H 1.08998 * 109.46845 * 296.44388 * 9 7 2 30 30 H 1.08998 * 109.47438 * 280.39970 * 11 10 9 31 31 H 1.09004 * 109.47288 * 40.40422 * 11 10 9 32 32 H 1.09005 * 109.47224 * 305.07377 * 12 11 10 33 33 H 1.09001 * 109.46798 * 65.06276 * 12 11 10 34 34 H 1.09001 * 109.35775 * 271.17959 * 14 13 12 35 35 H 1.08998 * 109.36164 * 30.82511 * 14 13 12 36 36 H 1.09004 * 110.65264 * 286.76937 * 15 14 13 37 37 H 1.09002 * 110.38415 * 164.11230 * 15 14 13 38 38 H 1.09001 * 111.16851 * 204.05737 * 16 15 14 39 39 H 1.09007 * 111.16662 * 79.79155 * 16 15 14 40 40 H 1.09004 * 109.47184 * 173.94926 * 20 10 9 41 41 H 1.09003 * 109.46721 * 53.95714 * 20 10 9 42 42 H 1.08000 * 120.41854 * 359.95954 * 22 21 20 43 43 H 1.07996 * 120.78979 * 180.23487 * 23 22 21 44 44 H 1.07996 * 120.41947 * 179.78445 * 24 23 22 45 45 H 1.07994 * 119.61940 * 180.24992 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6179 0.0000 4 1 3.1029 1.6965 -1.2125 5 1 1.2840 2.7466 -0.0006 6 1 3.1028 1.6966 1.2124 7 6 2.0047 -1.1939 0.0005 8 1 3.0846 -1.1939 0.0010 9 6 1.2512 -2.4991 0.0005 10 7 2.2036 -3.6143 -0.0848 11 6 2.8066 -3.6904 -1.4221 12 6 4.1022 -4.5013 -1.3520 13 7 4.7657 -4.4757 -2.6579 14 6 4.4975 -5.3773 -3.7884 15 6 4.7934 -4.6553 -5.1198 16 6 6.1625 -3.9564 -4.8788 17 16 5.9707 -3.4222 -3.1343 18 8 5.3866 -2.1293 -3.0530 19 8 7.1055 -3.7811 -2.3580 20 6 1.5603 -4.8847 0.2757 21 6 1.1717 -4.8558 1.7314 22 6 -0.1105 -4.4830 2.0889 23 6 -0.4593 -4.4648 3.4305 24 6 0.5018 -4.8141 4.3672 25 6 1.7631 -5.1762 3.9347 26 7 2.0585 -5.1866 2.6493 27 1 -0.4850 0.8400 -0.0004 28 1 0.5779 -2.5300 -0.8561 29 1 0.6729 -2.5847 0.9205 30 1 2.1112 -4.1753 -2.1072 31 1 3.0266 -2.6843 -1.7793 32 1 4.7621 -4.0675 -0.6006 33 1 3.8717 -5.5317 -1.0816 34 1 5.1311 -6.2603 -3.7046 35 1 3.4511 -5.6816 -3.7676 36 1 4.0214 -3.9168 -5.3365 37 1 4.8715 -5.3763 -5.9335 38 1 6.2893 -3.1000 -5.5410 39 1 6.9880 -4.6602 -4.9864 40 1 2.2552 -5.7062 0.1014 41 1 0.6690 -5.0269 -0.3356 42 1 -0.8324 -4.2127 1.3325 43 1 -1.4547 -4.1814 3.7391 44 1 0.2660 -4.8076 5.4211 45 1 2.5160 -5.4536 4.6576 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000336839369.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:29:03 Heat of formation + Delta-G solvation = -42.159942 kcal Electronic energy + Delta-G solvation = -27889.760428 eV Core-core repulsion = 24033.775321 eV Total energy + Delta-G solvation = -3855.985107 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -41.08899 -38.94266 -38.06788 -37.77275 -36.88883 -34.88198 -34.23193 -33.29820 -32.47933 -30.06570 -28.96550 -27.12646 -26.29443 -24.53603 -24.04775 -23.19662 -22.82115 -21.48625 -19.86387 -18.64734 -18.14823 -17.85117 -17.68883 -17.19585 -16.83369 -16.65316 -16.42385 -16.29339 -15.89261 -15.40320 -15.25646 -14.94498 -14.64338 -14.50822 -14.19847 -14.08904 -14.03121 -13.71158 -13.57011 -13.30670 -13.16397 -13.09011 -13.02034 -12.95559 -12.63787 -12.63096 -12.38227 -12.24285 -12.15991 -11.86409 -11.67383 -11.37810 -11.28558 -10.72130 -10.59222 -10.27317 -9.94874 -9.80514 -9.00409 -8.22169 -6.28553 -0.73667 0.25971 0.47507 1.32377 1.36145 1.44541 1.55867 2.37183 2.73128 2.84493 3.06372 3.09840 3.39807 3.47486 3.49542 3.67023 3.90459 3.95278 4.07544 4.09135 4.23833 4.25026 4.32679 4.43399 4.48501 4.55878 4.58869 4.63681 4.69217 4.83469 4.87231 4.92356 4.94209 5.01169 5.10475 5.13883 5.26460 5.28765 5.32896 5.36108 5.64855 5.70808 5.88832 6.07536 6.32067 6.61877 6.85204 7.19539 7.39165 8.87419 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.009018 B = 0.004281 C = 0.003249 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3104.319899 B = 6538.371372 C = 8616.849855 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.925 5.925 2 C 0.012 3.988 3 Si 0.948 3.052 4 H -0.278 1.278 5 H -0.271 1.271 6 H -0.273 1.273 7 C -0.520 4.520 8 H 0.044 0.956 9 C 0.210 3.790 10 N -0.539 5.539 11 C 0.048 3.952 12 C 0.175 3.825 13 N -0.992 5.992 14 C 0.066 3.934 15 C -0.123 4.123 16 C -0.550 4.550 17 S 2.531 3.469 18 O -1.010 7.010 19 O -1.006 7.006 20 C 0.103 3.897 21 C 0.127 3.873 22 C -0.175 4.175 23 C -0.083 4.083 24 C -0.173 4.173 25 C 0.082 3.918 26 N -0.496 5.496 27 H 0.265 0.735 28 H -0.031 1.031 29 H 0.023 0.977 30 H 0.043 0.957 31 H 0.053 0.947 32 H 0.057 0.943 33 H 0.101 0.899 34 H 0.101 0.899 35 H 0.102 0.898 36 H 0.089 0.911 37 H 0.154 0.846 38 H 0.162 0.838 39 H 0.175 0.825 40 H 0.100 0.900 41 H 0.048 0.952 42 H 0.125 0.875 43 H 0.155 0.845 44 H 0.168 0.832 45 H 0.179 0.821 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.035 -16.774 -7.362 18.998 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.566 5.566 2 C -0.186 4.186 3 Si 0.773 3.227 4 H -0.204 1.204 5 H -0.195 1.195 6 H -0.198 1.198 7 C -0.559 4.559 8 H 0.062 0.938 9 C 0.084 3.916 10 N -0.265 5.265 11 C -0.082 4.082 12 C 0.050 3.950 13 N -0.834 5.834 14 C -0.058 4.058 15 C -0.163 4.163 16 C -0.686 4.686 17 S 2.633 3.367 18 O -0.999 6.999 19 O -0.996 6.996 20 C -0.025 4.025 21 C -0.011 4.011 22 C -0.195 4.195 23 C -0.109 4.109 24 C -0.193 4.193 25 C -0.075 4.075 26 N -0.206 5.206 27 H 0.073 0.927 28 H -0.013 1.013 29 H 0.041 0.959 30 H 0.061 0.939 31 H 0.072 0.928 32 H 0.075 0.925 33 H 0.119 0.881 34 H 0.120 0.880 35 H 0.120 0.880 36 H 0.108 0.892 37 H 0.172 0.828 38 H 0.180 0.820 39 H 0.192 0.808 40 H 0.119 0.881 41 H 0.066 0.934 42 H 0.143 0.857 43 H 0.173 0.827 44 H 0.185 0.815 45 H 0.196 0.804 Dipole moment (debyes) X Y Z Total from point charges 6.519 -16.086 -6.596 18.568 hybrid contribution -1.512 1.289 -0.529 2.056 sum 5.007 -14.797 -7.125 17.170 Atomic orbital electron populations 1.70021 1.06909 1.27670 1.51965 1.25636 0.95721 1.02162 0.95093 0.85769 0.78640 0.79564 0.78718 1.20394 1.19540 1.19819 1.21374 0.92983 0.91858 1.49656 0.93808 1.19429 0.89724 0.87901 0.94528 1.61839 1.34561 1.02964 1.27097 1.22422 0.96173 1.00511 0.89112 1.20782 0.92096 1.01162 0.80939 1.57060 1.55923 1.50172 1.20267 1.22506 1.06064 0.93972 0.83286 1.22897 0.92604 1.02086 0.98683 1.30617 1.07927 1.13520 1.16547 1.07340 0.74076 0.73971 0.81278 1.93612 1.76803 1.42010 1.87520 1.93530 1.52364 1.83687 1.69972 1.21018 0.98445 0.93292 0.89731 1.21134 0.89702 0.94427 0.95822 1.22117 0.97886 1.01138 0.98371 1.21897 1.01233 0.95465 0.92258 1.22457 0.94214 1.00483 1.02140 1.23271 0.96574 0.95600 0.92086 1.67426 1.35431 1.14912 1.02851 0.92653 1.01337 0.95944 0.93854 0.92848 0.92486 0.88067 0.88045 0.87961 0.89204 0.82822 0.81992 0.80758 0.88141 0.93417 0.85743 0.82685 0.81475 0.80355 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.91 13.29 21.45 0.28 -56.62 16 2 C 0.01 0.75 5.46 84.65 0.46 1.21 16 3 Si 0.95 48.46 29.54 68.60 2.03 50.49 16 4 H -0.28 -14.37 7.11 99.48 0.71 -13.66 16 5 H -0.27 -12.97 7.11 99.48 0.71 -12.26 16 6 H -0.27 -13.71 7.11 99.48 0.71 -13.00 16 7 C -0.52 -31.97 8.29 25.60 0.21 -31.76 16 8 H 0.04 2.81 7.76 -2.91 -0.02 2.78 16 9 C 0.21 11.51 4.57 85.56 0.39 11.90 16 10 N -0.54 -24.39 4.38 -905.37 -3.96 -28.36 16 11 C 0.05 1.93 5.15 86.30 0.44 2.37 16 12 C 0.18 5.80 6.38 86.38 0.55 6.36 16 13 N -0.99 -26.45 3.31 -512.03 -1.70 -28.14 16 14 C 0.07 0.95 6.83 86.72 0.59 1.54 16 15 C -0.12 -1.17 6.81 31.94 0.22 -0.96 16 16 C -0.55 -6.54 7.51 72.88 0.55 -5.99 16 17 S 2.53 72.93 6.17 -56.49 -0.35 72.58 16 18 O -1.01 -41.35 18.14 -127.77 -2.32 -43.67 16 19 O -1.01 -35.79 18.13 -127.77 -2.32 -38.11 16 20 C 0.10 3.78 5.11 85.56 0.44 4.22 16 21 C 0.13 4.77 5.69 42.55 0.24 5.01 16 22 C -0.17 -6.15 8.03 22.36 0.18 -5.97 16 23 C -0.08 -2.39 10.18 22.47 0.23 -2.16 16 24 C -0.17 -4.44 10.11 22.36 0.23 -4.21 16 25 C 0.08 2.38 11.18 84.67 0.95 3.33 16 26 N -0.50 -18.13 10.27 -183.89 -1.89 -20.02 16 27 H 0.26 15.32 8.31 -92.71 -0.77 14.55 16 28 H -0.03 -1.81 8.06 -2.39 -0.02 -1.83 16 29 H 0.02 1.28 5.57 -2.39 -0.01 1.27 16 30 H 0.04 1.55 8.00 -2.39 -0.02 1.53 16 31 H 0.05 2.65 7.07 -2.39 -0.02 2.63 16 32 H 0.06 2.21 8.14 -2.38 -0.02 2.19 16 33 H 0.10 2.71 6.95 -2.39 -0.02 2.70 16 34 H 0.10 0.92 8.14 -2.39 -0.02 0.90 16 35 H 0.10 1.30 8.14 -2.39 -0.02 1.28 16 36 H 0.09 1.05 8.14 -2.39 -0.02 1.03 16 37 H 0.15 0.23 8.14 -2.39 -0.02 0.21 16 38 H 0.16 1.39 8.14 -2.39 -0.02 1.37 16 39 H 0.17 1.00 8.14 -2.38 -0.02 0.98 16 40 H 0.10 3.16 6.71 -2.38 -0.02 3.15 16 41 H 0.05 1.64 8.02 -2.39 -0.02 1.62 16 42 H 0.12 4.41 8.01 -2.91 -0.02 4.39 16 43 H 0.16 3.53 8.06 -2.91 -0.02 3.51 16 44 H 0.17 2.88 8.06 -2.91 -0.02 2.86 16 45 H 0.18 3.91 8.06 -2.91 -0.02 3.89 16 Total: -1.00 -91.34 381.49 -3.56 -94.90 By element: Atomic # 1 Polarization: 11.09 SS G_CDS: 0.98 Total: 12.07 kcal Atomic # 6 Polarization: -20.80 SS G_CDS: 5.68 Total: -15.12 kcal Atomic # 7 Polarization: -125.88 SS G_CDS: -7.26 Total: -133.14 kcal Atomic # 8 Polarization: -77.15 SS G_CDS: -4.63 Total: -81.78 kcal Atomic # 14 Polarization: 48.46 SS G_CDS: 2.03 Total: 50.49 kcal Atomic # 16 Polarization: 72.93 SS G_CDS: -0.35 Total: 72.58 kcal Total: -91.34 -3.56 -94.90 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000336839369.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.740 kcal (2) G-P(sol) polarization free energy of solvation -91.336 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.596 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.564 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -94.900 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.160 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds