Wall clock time and date at job start Tue Mar 31 2020 23:10:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 O 1.21283 * 119.99931 * 2 1 4 4 N 1.34773 * 120.00164 * 180.02562 * 2 1 3 5 5 C 1.46508 * 119.99870 * 179.97438 * 4 2 1 6 6 C 1.53004 * 109.46728 * 179.97438 * 5 4 2 7 7 N 1.46900 * 109.46840 * 181.24746 * 6 5 4 8 8 C 1.46899 * 111.00012 * 288.12183 * 7 6 5 9 9 C 1.50705 * 109.47350 * 170.00080 * 8 7 6 10 10 O 1.21291 * 119.99500 * 359.97438 * 9 8 7 11 11 N 1.34777 * 120.00366 * 179.97438 * 9 8 7 12 12 C 1.37097 * 120.00178 * 179.97438 * 11 9 8 13 13 H 1.07996 * 119.99500 * 0.02562 * 12 11 9 14 14 C 1.38941 * 119.99974 * 179.97438 * 12 11 9 15 15 N 1.31419 * 120.00224 * 0.02562 * 14 12 11 16 16 Si 1.86804 * 120.00154 * 180.02562 * 14 12 11 17 17 H 1.48504 * 109.46874 * 359.97438 * 16 14 12 18 18 H 1.48493 * 109.47305 * 119.99856 * 16 14 12 19 19 H 1.48498 * 109.47115 * 240.00336 * 16 14 12 20 20 C 1.46897 * 110.99982 * 164.16487 * 7 6 5 21 21 C 1.50692 * 109.47140 * 287.60177 * 20 7 6 22 22 C 1.33394 * 125.20145 * 94.01723 * 21 20 7 23 23 C 1.38422 * 114.92078 * 179.97438 * 22 21 20 24 24 C 1.33391 * 114.92327 * 0.02562 * 23 22 21 25 25 C 1.50694 * 125.20435 * 179.97438 * 24 23 22 26 26 S 1.75886 * 109.59199 * 0.23648 * 24 23 22 27 27 H 1.09001 * 109.46666 * 179.97438 * 1 2 3 28 28 H 1.09004 * 109.46843 * 299.99300 * 1 2 3 29 29 H 1.08999 * 109.47173 * 59.99938 * 1 2 3 30 30 H 0.96997 * 120.00299 * 0.02562 * 4 2 1 31 31 H 1.08995 * 109.46872 * 60.00025 * 5 4 2 32 32 H 1.08994 * 109.46850 * 299.99852 * 5 4 2 33 33 H 1.09003 * 109.47176 * 61.24985 * 6 5 4 34 34 H 1.08996 * 109.47518 * 301.24660 * 6 5 4 35 35 H 1.09007 * 109.47139 * 289.99672 * 8 7 6 36 36 H 1.08999 * 109.47412 * 49.99878 * 8 7 6 37 37 H 0.97004 * 119.99447 * 0.02562 * 11 9 8 38 38 H 0.97002 * 119.99904 * 180.02562 * 15 14 12 39 39 H 1.09005 * 109.46723 * 167.59886 * 20 7 6 40 40 H 1.09000 * 109.47138 * 47.60501 * 20 7 6 41 41 H 1.08000 * 122.54085 * 359.97438 * 22 21 20 42 42 H 1.07997 * 122.54110 * 180.02562 * 23 22 21 43 43 H 1.09005 * 109.47193 * 89.99574 * 25 24 23 44 44 H 1.08996 * 109.47486 * 329.99430 * 25 24 23 45 45 H 1.09000 * 109.46890 * 209.98811 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1134 1.0503 0.0000 4 7 2.1809 -1.1671 -0.0005 5 6 3.6460 -1.1671 -0.0011 6 6 4.1560 -2.6096 -0.0010 7 7 5.6247 -2.6097 0.0286 8 6 6.1772 -2.1740 -1.2609 9 6 7.6611 -1.9504 -1.1218 10 8 8.2047 -2.1354 -0.0535 11 7 8.3841 -1.5450 -2.1846 12 6 9.7339 -1.3411 -2.0579 13 1 10.2178 -1.5058 -1.1066 14 6 10.4792 -0.9236 -3.1537 15 7 9.8903 -0.7237 -4.3114 16 14 12.3185 -0.6465 -2.9813 17 1 12.7344 -0.9383 -1.5859 18 1 13.0442 -1.5466 -3.9131 19 1 12.6390 0.7663 -3.3076 20 6 6.1436 -3.9316 0.4041 21 6 5.8929 -4.1717 1.8705 22 6 4.8351 -4.8083 2.3756 23 6 4.8196 -4.9093 3.7561 24 6 5.8645 -4.3543 4.3721 25 6 6.0813 -4.3294 5.8631 26 16 6.9467 -3.6493 3.1782 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3633 0.5137 0.8901 29 1 -0.3633 0.5138 -0.8900 30 1 1.6960 -2.0072 -0.0013 31 1 4.0096 -0.6534 0.8888 32 1 4.0089 -0.6531 -0.8911 33 1 3.8107 -3.1171 -0.9017 34 1 3.7749 -3.1297 0.8778 35 1 5.9944 -2.9419 -2.0126 36 1 5.6969 -1.2445 -1.5666 37 1 7.9491 -1.3967 -3.0389 38 1 10.4108 -0.4326 -5.0764 39 1 7.2151 -3.9706 0.2074 40 1 5.6386 -4.6999 -0.1815 41 1 4.0502 -5.2142 1.7546 42 1 4.0219 -5.4002 4.2937 43 1 6.6417 -5.2148 6.1636 44 1 5.1167 -4.3206 6.3705 45 1 6.6425 -3.4351 6.1338 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000338323222.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:10:31 Heat of formation + Delta-G solvation = -36.586906 kcal Electronic energy + Delta-G solvation = -26803.852551 eV Core-core repulsion = 22948.109109 eV Total energy + Delta-G solvation = -3855.743442 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -39.71896 -38.93034 -37.84528 -36.64906 -34.71542 -33.82706 -32.26013 -31.22952 -30.80681 -28.87596 -28.48758 -26.02251 -24.37970 -23.82033 -22.46177 -21.36006 -20.62418 -19.21547 -18.66808 -17.87438 -17.08307 -16.72363 -16.31675 -16.11806 -15.66077 -15.27630 -15.00432 -14.56309 -14.40686 -14.05070 -13.88347 -13.75191 -13.68649 -13.46819 -13.21902 -13.05590 -12.75617 -12.47697 -12.38582 -12.22817 -11.95737 -11.76987 -11.69067 -11.50095 -11.48986 -11.15468 -11.04271 -10.85830 -10.34354 -10.31452 -10.22195 -10.01052 -9.48645 -9.14758 -8.56525 -8.26182 -8.19985 -8.02487 -7.93732 -6.41577 -3.82205 1.16112 1.87142 2.34232 2.55015 2.80460 3.05883 3.16780 3.27740 3.34769 3.88569 4.04783 4.26499 4.65569 4.80022 4.89918 4.94257 4.95437 5.00625 5.17248 5.20370 5.23919 5.27140 5.38634 5.42373 5.45514 5.52853 5.56817 5.65034 5.71779 5.86246 5.87853 5.92224 6.03394 6.06015 6.23558 6.30467 6.33382 6.40711 6.67712 7.11640 7.20713 7.37774 7.55886 8.06161 8.12369 8.60923 9.18117 9.53963 10.04840 10.76139 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.007170 B = 0.003673 C = 0.002594 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3904.084901 B = 7622.160446 C =10793.625639 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.507 3.493 3 O -0.544 6.544 4 N -0.729 5.729 5 C 0.120 3.880 6 C 0.042 3.958 7 N -0.506 5.506 8 C 0.042 3.958 9 C 0.442 3.558 10 O -0.574 6.574 11 N -0.563 5.563 12 C -0.297 4.297 13 H 0.104 0.896 14 C 0.022 3.978 15 N -0.901 5.901 16 Si 0.928 3.072 17 H -0.268 1.268 18 H -0.282 1.282 19 H -0.281 1.281 20 C 0.121 3.879 21 C -0.151 4.151 22 C -0.152 4.152 23 C -0.143 4.143 24 C -0.209 4.209 25 C -0.079 4.079 26 S 0.165 5.835 27 H 0.074 0.926 28 H 0.093 0.907 29 H 0.093 0.907 30 H 0.398 0.602 31 H 0.078 0.922 32 H 0.070 0.930 33 H 0.038 0.962 34 H 0.084 0.916 35 H 0.050 0.950 36 H 0.093 0.907 37 H 0.392 0.608 38 H 0.271 0.729 39 H 0.112 0.888 40 H 0.045 0.955 41 H 0.130 0.870 42 H 0.129 0.871 43 H 0.070 0.930 44 H 0.070 0.930 45 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.842 -8.565 10.626 22.464 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C 0.293 3.707 3 O -0.421 6.421 4 N -0.382 5.382 5 C -0.004 4.004 6 C -0.086 4.086 7 N -0.230 5.230 8 C -0.089 4.089 9 C 0.227 3.773 10 O -0.459 6.459 11 N -0.199 5.199 12 C -0.427 4.427 13 H 0.122 0.878 14 C -0.179 4.179 15 N -0.543 5.543 16 Si 0.756 3.244 17 H -0.192 1.192 18 H -0.208 1.208 19 H -0.207 1.207 20 C -0.007 4.007 21 C -0.270 4.270 22 C -0.183 4.183 23 C -0.174 4.174 24 C -0.327 4.327 25 C -0.137 4.137 26 S 0.430 5.570 27 H 0.093 0.907 28 H 0.112 0.888 29 H 0.112 0.888 30 H 0.232 0.768 31 H 0.097 0.903 32 H 0.088 0.912 33 H 0.057 0.943 34 H 0.102 0.898 35 H 0.068 0.932 36 H 0.111 0.889 37 H 0.225 0.775 38 H 0.081 0.919 39 H 0.130 0.870 40 H 0.063 0.937 41 H 0.147 0.853 42 H 0.147 0.853 43 H 0.088 0.912 44 H 0.089 0.911 45 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -15.389 -6.728 11.585 20.404 hybrid contribution -1.300 -1.484 -1.384 2.410 sum -16.689 -8.212 10.201 21.214 Atomic orbital electron populations 1.21840 0.91821 1.04019 1.05245 1.20784 0.90518 0.83517 0.75840 1.90764 1.70719 1.31369 1.49294 1.46063 1.07744 1.08649 1.75742 1.21339 0.78478 0.97084 1.03526 1.22295 0.89028 0.95922 1.01394 1.61340 1.04474 1.27065 1.30142 1.21978 0.96266 1.01099 0.89605 1.19670 0.87454 0.84735 0.85441 1.90507 1.71937 1.56239 1.27173 1.41870 1.08512 1.58846 1.10681 1.19738 0.82688 1.42174 0.98057 0.87799 1.25257 1.00604 0.97256 0.94810 1.69623 1.36894 1.46821 1.00913 0.85816 0.82176 0.77880 0.78578 1.19194 1.20811 1.20745 1.20672 1.03377 0.88446 0.88209 1.24351 0.98959 1.04318 0.99360 1.19959 0.99188 1.04322 0.94817 1.19882 0.99559 1.04012 0.93943 1.24696 1.00920 1.06886 1.00165 1.20263 1.02405 1.02387 0.88670 1.84863 1.23606 1.54072 0.94459 0.90714 0.88834 0.88814 0.76805 0.90328 0.91193 0.94338 0.89779 0.93171 0.88891 0.77521 0.91932 0.86976 0.93724 0.85257 0.85326 0.91164 0.91114 0.91489 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.12 10.39 36.01 0.37 -0.75 16 2 C 0.51 5.88 7.94 -10.99 -0.09 5.79 16 3 O -0.54 -9.29 17.10 5.55 0.09 -9.19 16 4 N -0.73 -7.24 5.56 -60.29 -0.33 -7.57 16 5 C 0.12 1.54 5.71 -4.04 -0.02 1.51 16 6 C 0.04 0.50 4.92 -3.82 -0.02 0.48 16 7 N -0.51 -7.93 4.14 -237.52 -0.98 -8.91 16 8 C 0.04 0.71 5.30 -4.97 -0.03 0.68 16 9 C 0.44 10.06 7.34 -10.98 -0.08 9.98 16 10 O -0.57 -14.72 14.06 5.55 0.08 -14.64 16 11 N -0.56 -13.99 5.29 -10.97 -0.06 -14.05 16 12 C -0.30 -8.18 9.68 -14.94 -0.14 -8.32 16 13 H 0.10 3.00 7.16 -52.49 -0.38 2.63 16 14 C 0.02 0.60 5.50 -17.47 -0.10 0.50 16 15 N -0.90 -24.48 13.05 55.50 0.72 -23.76 16 16 Si 0.93 21.07 29.55 -169.99 -5.02 16.05 16 17 H -0.27 -6.08 7.11 56.52 0.40 -5.68 16 18 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16 19 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 20 C 0.12 1.88 5.02 -4.98 -0.03 1.86 16 21 C -0.15 -2.21 5.56 -36.01 -0.20 -2.41 16 22 C -0.15 -1.85 8.73 -41.21 -0.36 -2.21 16 23 C -0.14 -1.68 10.05 -41.21 -0.41 -2.09 16 24 C -0.21 -2.59 6.51 -36.01 -0.23 -2.83 16 25 C -0.08 -0.74 10.38 36.00 0.37 -0.37 16 26 S 0.16 2.52 23.31 -107.50 -2.51 0.02 16 27 H 0.07 0.29 7.91 -51.93 -0.41 -0.13 16 28 H 0.09 0.57 8.14 -51.93 -0.42 0.15 16 29 H 0.09 0.57 8.14 -51.93 -0.42 0.15 16 30 H 0.40 2.55 8.31 -40.82 -0.34 2.21 16 31 H 0.08 1.21 8.14 -51.93 -0.42 0.79 16 32 H 0.07 1.01 6.64 -51.93 -0.34 0.66 16 33 H 0.04 0.39 8.05 -51.93 -0.42 -0.02 16 34 H 0.08 0.92 6.07 -51.93 -0.32 0.61 16 35 H 0.05 0.77 8.12 -51.93 -0.42 0.34 16 36 H 0.09 1.51 6.42 -51.93 -0.33 1.17 16 37 H 0.39 9.39 7.90 -40.82 -0.32 9.07 16 38 H 0.27 6.97 8.31 -40.82 -0.34 6.63 16 39 H 0.11 2.13 5.81 -51.93 -0.30 1.83 16 40 H 0.04 0.59 8.04 -51.93 -0.42 0.18 16 41 H 0.13 1.29 7.96 -52.49 -0.42 0.87 16 42 H 0.13 1.20 8.06 -52.49 -0.42 0.78 16 43 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 44 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 45 H 0.07 0.62 8.14 -51.93 -0.42 0.19 16 LS Contribution 390.03 15.07 5.88 5.88 Total: -1.00 -33.84 390.03 -9.61 -43.44 By element: Atomic # 1 Polarization: 17.41 SS G_CDS: -6.51 Total: 10.90 kcal Atomic # 6 Polarization: 2.79 SS G_CDS: -0.96 Total: 1.83 kcal Atomic # 7 Polarization: -53.64 SS G_CDS: -0.65 Total: -54.29 kcal Atomic # 8 Polarization: -24.01 SS G_CDS: 0.17 Total: -23.83 kcal Atomic # 14 Polarization: 21.07 SS G_CDS: -5.02 Total: 16.05 kcal Atomic # 16 Polarization: 2.52 SS G_CDS: -2.51 Total: 0.02 kcal Total LS contribution 5.88 Total: 5.88 kcal Total: -33.84 -9.61 -43.44 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000338323222.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.858 kcal (2) G-P(sol) polarization free energy of solvation -33.837 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.980 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.607 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.444 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.587 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds