Wall clock time and date at job start Tue Mar 31 2020 23:10:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 O 1.21283 * 119.99931 * 2 1 4 4 N 1.34773 * 120.00164 * 180.02562 * 2 1 3 5 5 C 1.46508 * 119.99870 * 179.97438 * 4 2 1 6 6 C 1.53004 * 109.46728 * 179.97438 * 5 4 2 7 7 N 1.46900 * 109.46840 * 181.24746 * 6 5 4 8 8 C 1.46899 * 111.00012 * 288.12183 * 7 6 5 9 9 C 1.50705 * 109.47350 * 170.00080 * 8 7 6 10 10 O 1.21291 * 119.99500 * 359.97438 * 9 8 7 11 11 N 1.34777 * 120.00366 * 179.97438 * 9 8 7 12 12 C 1.37097 * 120.00178 * 179.97438 * 11 9 8 13 13 H 1.07996 * 119.99500 * 0.02562 * 12 11 9 14 14 C 1.38941 * 119.99974 * 179.97438 * 12 11 9 15 15 N 1.31419 * 120.00224 * 0.02562 * 14 12 11 16 16 Si 1.86804 * 120.00154 * 180.02562 * 14 12 11 17 17 H 1.48504 * 109.46874 * 359.97438 * 16 14 12 18 18 H 1.48493 * 109.47305 * 119.99856 * 16 14 12 19 19 H 1.48498 * 109.47115 * 240.00336 * 16 14 12 20 20 C 1.46897 * 110.99982 * 164.16487 * 7 6 5 21 21 C 1.50692 * 109.47140 * 287.60177 * 20 7 6 22 22 C 1.33394 * 125.20145 * 94.01723 * 21 20 7 23 23 C 1.38422 * 114.92078 * 179.97438 * 22 21 20 24 24 C 1.33391 * 114.92327 * 0.02562 * 23 22 21 25 25 C 1.50694 * 125.20435 * 179.97438 * 24 23 22 26 26 S 1.75886 * 109.59199 * 0.23648 * 24 23 22 27 27 H 1.09001 * 109.46666 * 179.97438 * 1 2 3 28 28 H 1.09004 * 109.46843 * 299.99300 * 1 2 3 29 29 H 1.08999 * 109.47173 * 59.99938 * 1 2 3 30 30 H 0.96997 * 120.00299 * 0.02562 * 4 2 1 31 31 H 1.08995 * 109.46872 * 60.00025 * 5 4 2 32 32 H 1.08994 * 109.46850 * 299.99852 * 5 4 2 33 33 H 1.09003 * 109.47176 * 61.24985 * 6 5 4 34 34 H 1.08996 * 109.47518 * 301.24660 * 6 5 4 35 35 H 1.09007 * 109.47139 * 289.99672 * 8 7 6 36 36 H 1.08999 * 109.47412 * 49.99878 * 8 7 6 37 37 H 0.97004 * 119.99447 * 0.02562 * 11 9 8 38 38 H 0.97002 * 119.99904 * 180.02562 * 15 14 12 39 39 H 1.09005 * 109.46723 * 167.59886 * 20 7 6 40 40 H 1.09000 * 109.47138 * 47.60501 * 20 7 6 41 41 H 1.08000 * 122.54085 * 359.97438 * 22 21 20 42 42 H 1.07997 * 122.54110 * 180.02562 * 23 22 21 43 43 H 1.09005 * 109.47193 * 89.99574 * 25 24 23 44 44 H 1.08996 * 109.47486 * 329.99430 * 25 24 23 45 45 H 1.09000 * 109.46890 * 209.98811 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1134 1.0503 0.0000 4 7 2.1809 -1.1671 -0.0005 5 6 3.6460 -1.1671 -0.0011 6 6 4.1560 -2.6096 -0.0010 7 7 5.6247 -2.6097 0.0286 8 6 6.1772 -2.1740 -1.2609 9 6 7.6611 -1.9504 -1.1218 10 8 8.2047 -2.1354 -0.0535 11 7 8.3841 -1.5450 -2.1846 12 6 9.7339 -1.3411 -2.0579 13 1 10.2178 -1.5058 -1.1066 14 6 10.4792 -0.9236 -3.1537 15 7 9.8903 -0.7237 -4.3114 16 14 12.3185 -0.6465 -2.9813 17 1 12.7344 -0.9383 -1.5859 18 1 13.0442 -1.5466 -3.9131 19 1 12.6390 0.7663 -3.3076 20 6 6.1436 -3.9316 0.4041 21 6 5.8929 -4.1717 1.8705 22 6 4.8351 -4.8083 2.3756 23 6 4.8196 -4.9093 3.7561 24 6 5.8645 -4.3543 4.3721 25 6 6.0813 -4.3294 5.8631 26 16 6.9467 -3.6493 3.1782 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3633 0.5137 0.8901 29 1 -0.3633 0.5138 -0.8900 30 1 1.6960 -2.0072 -0.0013 31 1 4.0096 -0.6534 0.8888 32 1 4.0089 -0.6531 -0.8911 33 1 3.8107 -3.1171 -0.9017 34 1 3.7749 -3.1297 0.8778 35 1 5.9944 -2.9419 -2.0126 36 1 5.6969 -1.2445 -1.5666 37 1 7.9491 -1.3967 -3.0389 38 1 10.4108 -0.4326 -5.0764 39 1 7.2151 -3.9706 0.2074 40 1 5.6386 -4.6999 -0.1815 41 1 4.0502 -5.2142 1.7546 42 1 4.0219 -5.4002 4.2937 43 1 6.6417 -5.2148 6.1636 44 1 5.1167 -4.3206 6.3705 45 1 6.6425 -3.4351 6.1338 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000338323222.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:10:30 Heat of formation + Delta-G solvation = -62.124563 kcal Electronic energy + Delta-G solvation = -26804.959947 eV Core-core repulsion = 22948.109109 eV Total energy + Delta-G solvation = -3856.850838 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -40.79938 -40.34588 -39.10375 -37.89607 -36.01780 -35.57461 -33.38247 -33.08344 -31.66478 -29.96742 -29.52498 -27.39669 -26.03077 -24.85701 -23.46452 -22.54678 -21.59030 -20.94288 -19.86459 -19.63020 -18.21393 -17.71211 -17.66381 -17.23482 -16.91936 -16.47590 -16.31568 -16.10937 -15.73034 -15.48273 -15.22425 -15.11936 -14.69115 -14.54868 -14.26347 -13.96299 -13.88979 -13.53019 -13.44900 -13.23272 -13.13781 -13.08282 -12.89734 -12.82126 -12.70554 -12.47864 -12.40094 -12.16766 -12.14109 -12.02241 -11.45578 -11.35644 -11.01152 -10.28075 -10.12995 -9.98305 -9.38407 -9.33327 -9.20273 -8.46199 -5.93940 0.15402 0.82294 1.32877 1.35171 1.40229 1.54132 1.65607 1.85738 2.06656 2.16739 2.29919 2.91865 3.21048 3.38821 3.79705 3.92473 4.00379 4.06148 4.10801 4.22955 4.31004 4.42467 4.44121 4.48602 4.53563 4.57591 4.64479 4.69102 4.75888 4.80128 4.83672 4.93182 4.97340 5.12129 5.12256 5.33222 5.39894 5.41954 5.42268 5.75277 5.83556 6.02477 6.13205 6.60108 6.61512 7.14392 7.30031 7.58011 8.13782 8.71577 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.007170 B = 0.003673 C = 0.002594 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3904.084901 B = 7622.160446 C =10793.625639 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.498 3.502 3 O -0.610 6.610 4 N -0.711 5.711 5 C 0.126 3.874 6 C 0.054 3.946 7 N -0.528 5.528 8 C 0.056 3.944 9 C 0.440 3.560 10 O -0.606 6.606 11 N -0.576 5.576 12 C -0.327 4.327 13 H 0.078 0.922 14 C -0.014 4.014 15 N -0.922 5.922 16 Si 0.990 3.010 17 H -0.274 1.274 18 H -0.270 1.270 19 H -0.273 1.273 20 C 0.129 3.871 21 C -0.169 4.169 22 C -0.130 4.130 23 C -0.145 4.145 24 C -0.195 4.195 25 C -0.080 4.080 26 S 0.062 5.938 27 H 0.111 0.889 28 H 0.100 0.900 29 H 0.100 0.900 30 H 0.420 0.580 31 H 0.045 0.955 32 H 0.050 0.950 33 H 0.069 0.931 34 H 0.100 0.900 35 H 0.077 0.923 36 H 0.103 0.897 37 H 0.395 0.605 38 H 0.276 0.724 39 H 0.067 0.933 40 H 0.073 0.927 41 H 0.164 0.836 42 H 0.164 0.836 43 H 0.082 0.918 44 H 0.094 0.906 45 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.094 -10.614 10.969 26.037 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.288 3.712 3 O -0.491 6.491 4 N -0.365 5.365 5 C 0.001 3.999 6 C -0.074 4.074 7 N -0.253 5.253 8 C -0.075 4.075 9 C 0.227 3.773 10 O -0.491 6.491 11 N -0.214 5.214 12 C -0.457 4.457 13 H 0.096 0.904 14 C -0.213 4.213 15 N -0.563 5.563 16 Si 0.814 3.186 17 H -0.199 1.199 18 H -0.195 1.195 19 H -0.198 1.198 20 C 0.001 3.999 21 C -0.287 4.287 22 C -0.161 4.161 23 C -0.174 4.174 24 C -0.312 4.312 25 C -0.139 4.139 26 S 0.326 5.674 27 H 0.130 0.870 28 H 0.119 0.881 29 H 0.119 0.881 30 H 0.258 0.742 31 H 0.063 0.937 32 H 0.068 0.932 33 H 0.087 0.913 34 H 0.118 0.882 35 H 0.095 0.905 36 H 0.120 0.880 37 H 0.228 0.772 38 H 0.086 0.914 39 H 0.086 0.914 40 H 0.091 0.909 41 H 0.181 0.819 42 H 0.182 0.818 43 H 0.101 0.899 44 H 0.113 0.887 45 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -18.696 -8.834 11.922 23.868 hybrid contribution -0.387 -0.911 -1.374 1.694 sum -19.083 -9.745 10.547 23.882 Atomic orbital electron populations 1.21859 0.87375 1.06700 1.05869 1.21795 0.92609 0.82684 0.74156 1.90740 1.72392 1.33706 1.52288 1.45899 1.06458 1.09562 1.74594 1.21064 0.80364 0.97452 1.01000 1.22259 0.86324 0.95259 1.03518 1.61226 1.06949 1.27835 1.29315 1.21795 0.91744 1.02559 0.91391 1.20736 0.89840 0.82434 0.84254 1.90500 1.73446 1.56785 1.28358 1.41935 1.07970 1.60030 1.11425 1.19654 0.84335 1.44089 0.97574 0.90387 1.25990 1.04500 0.96543 0.94285 1.69682 1.38320 1.46988 1.01314 0.84917 0.77279 0.78206 0.78226 1.19892 1.19490 1.19844 1.20472 1.01013 0.88975 0.89471 1.24233 0.99786 1.06500 0.98184 1.20337 0.98417 1.01818 0.95526 1.20293 0.99862 1.03376 0.93902 1.25001 0.99715 1.05790 1.00723 1.20390 1.03885 1.02801 0.86780 1.85216 1.27149 1.56922 0.98083 0.87012 0.88127 0.88110 0.74197 0.93684 0.93175 0.91283 0.88170 0.90481 0.87952 0.77182 0.91423 0.91413 0.90912 0.81904 0.81840 0.89928 0.88689 0.91928 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.61 10.39 71.24 0.74 -0.87 16 2 C 0.50 10.91 7.94 87.66 0.70 11.60 16 3 O -0.61 -21.25 17.10 -3.04 -0.05 -21.30 16 4 N -0.71 -12.53 5.56 -463.05 -2.57 -15.10 16 5 C 0.13 3.16 5.71 86.38 0.49 3.65 16 6 C 0.05 1.14 4.92 86.30 0.42 1.57 16 7 N -0.53 -16.30 4.14 -905.36 -3.75 -20.05 16 8 C 0.06 1.91 5.30 85.56 0.45 2.36 16 9 C 0.44 20.90 7.34 87.66 0.64 21.55 16 10 O -0.61 -32.97 14.06 -3.06 -0.04 -33.01 16 11 N -0.58 -29.84 5.29 -306.99 -1.62 -31.46 16 12 C -0.33 -18.80 9.68 84.04 0.81 -17.99 16 13 H 0.08 4.80 7.16 -2.91 -0.02 4.78 16 14 C -0.01 -0.75 5.50 84.92 0.47 -0.28 16 15 N -0.92 -50.62 13.05 21.66 0.28 -50.34 16 16 Si 0.99 44.01 29.55 68.60 2.03 46.03 16 17 H -0.27 -12.36 7.11 99.48 0.71 -11.65 16 18 H -0.27 -11.40 7.11 99.48 0.71 -10.70 16 19 H -0.27 -11.72 7.11 99.48 0.71 -11.01 16 20 C 0.13 3.95 5.02 85.56 0.43 4.38 16 21 C -0.17 -4.82 5.56 24.59 0.14 -4.69 16 22 C -0.13 -2.74 8.73 21.22 0.19 -2.56 16 23 C -0.14 -2.88 10.05 21.22 0.21 -2.66 16 24 C -0.19 -4.55 6.51 24.59 0.16 -4.39 16 25 C -0.08 -1.35 10.38 71.23 0.74 -0.61 16 26 S 0.06 1.99 23.31 -56.49 -1.32 0.67 16 27 H 0.11 0.30 7.91 -2.39 -0.02 0.28 16 28 H 0.10 0.94 8.14 -2.38 -0.02 0.92 16 29 H 0.10 0.95 8.14 -2.39 -0.02 0.93 16 30 H 0.42 3.64 8.31 -92.71 -0.77 2.87 16 31 H 0.04 1.43 8.14 -2.39 -0.02 1.41 16 32 H 0.05 1.46 6.64 -2.39 -0.02 1.44 16 33 H 0.07 1.10 8.05 -2.39 -0.02 1.08 16 34 H 0.10 1.82 6.07 -2.39 -0.01 1.81 16 35 H 0.08 2.23 8.12 -2.38 -0.02 2.21 16 36 H 0.10 3.32 6.42 -2.39 -0.02 3.30 16 37 H 0.39 19.54 7.90 -92.71 -0.73 18.81 16 38 H 0.28 14.21 8.31 -92.71 -0.77 13.44 16 39 H 0.07 2.70 5.81 -2.38 -0.01 2.68 16 40 H 0.07 1.76 8.04 -2.39 -0.02 1.74 16 41 H 0.16 2.35 7.96 -2.91 -0.02 2.32 16 42 H 0.16 2.17 8.06 -2.91 -0.02 2.15 16 43 H 0.08 1.21 8.14 -2.38 -0.02 1.19 16 44 H 0.09 1.17 8.14 -2.39 -0.02 1.15 16 45 H 0.06 1.12 8.14 -2.39 -0.02 1.10 16 Total: -1.00 -80.32 390.03 -0.92 -81.25 By element: Atomic # 1 Polarization: 32.72 SS G_CDS: -0.47 Total: 32.25 kcal Atomic # 6 Polarization: 4.47 SS G_CDS: 6.60 Total: 11.06 kcal Atomic # 7 Polarization: -109.29 SS G_CDS: -7.66 Total: -116.95 kcal Atomic # 8 Polarization: -54.22 SS G_CDS: -0.10 Total: -54.31 kcal Atomic # 14 Polarization: 44.01 SS G_CDS: 2.03 Total: 46.03 kcal Atomic # 16 Polarization: 1.99 SS G_CDS: -1.32 Total: 0.67 kcal Total: -80.32 -0.92 -81.25 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000338323222.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.123 kcal (2) G-P(sol) polarization free energy of solvation -80.323 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.200 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.925 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.248 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.125 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds