Wall clock time and date at job start Tue Mar 31 2020 22:17:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30643 * 1 3 3 Si 1.86809 * 120.00093 * 2 1 4 4 H 1.48498 * 109.47137 * 239.99789 * 3 2 1 5 5 H 1.48498 * 109.46860 * 359.97438 * 3 2 1 6 6 H 1.48493 * 109.46990 * 119.99640 * 3 2 1 7 7 C 1.40227 * 120.00300 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00573 * 175.57544 * 7 2 1 9 9 C 1.41115 * 119.99549 * 355.58131 * 7 2 1 10 10 C 1.40886 * 120.09902 * 214.76524 * 9 7 2 11 11 C 1.36320 * 119.89082 * 180.02562 * 10 9 7 12 12 C 1.40018 * 120.10347 * 0.02562 * 11 10 9 13 13 C 1.47646 * 119.89070 * 179.97438 * 12 11 10 14 14 O 1.21580 * 120.00169 * 0.02562 * 13 12 11 15 15 N 1.34777 * 119.99329 * 180.02562 * 13 12 11 16 16 C 1.46502 * 119.99265 * 179.72706 * 15 13 12 17 17 C 1.50707 * 109.46742 * 180.27634 * 16 15 13 18 18 C 1.38306 * 119.96022 * 269.72155 * 17 16 15 19 19 C 1.38267 * 120.13596 * 179.72453 * 18 17 16 20 20 C 1.38132 * 120.06747 * 0.55299 * 19 18 17 21 21 C 1.38841 * 119.93128 * 359.72149 * 20 19 18 22 22 N 1.39948 * 120.06666 * 180.02562 * 21 20 19 23 23 C 1.34773 * 120.00454 * 324.82518 * 22 21 20 24 24 N 1.34778 * 120.00014 * 184.31754 * 23 22 21 25 25 O 1.21585 * 119.99757 * 4.31875 * 23 22 21 26 26 C 1.38090 * 119.96768 * 89.99899 * 17 16 15 27 27 C 1.40010 * 120.21147 * 0.25857 * 12 11 10 28 28 C 1.36321 * 120.10218 * 359.48071 * 27 12 11 29 29 H 0.97002 * 119.99888 * 0.02562 * 1 2 3 30 30 H 1.08003 * 120.05675 * 0.02562 * 10 9 7 31 31 H 1.08000 * 119.94646 * 179.97438 * 11 10 9 32 32 H 0.97001 * 120.00603 * 359.97438 * 15 13 12 33 33 H 1.08996 * 109.47455 * 300.26820 * 16 15 13 34 34 H 1.08998 * 109.47459 * 60.27245 * 16 15 13 35 35 H 1.08003 * 119.93224 * 0.02562 * 18 17 16 36 36 H 1.07999 * 119.96047 * 180.27990 * 19 18 17 37 37 H 1.08004 * 120.02928 * 179.75134 * 20 19 18 38 38 H 0.97003 * 119.99464 * 144.81920 * 22 21 20 39 39 H 0.96998 * 120.00447 * 0.02562 * 24 23 22 40 40 H 0.97001 * 119.99453 * 179.97438 * 24 23 22 41 41 H 1.07995 * 120.03313 * 359.97438 * 26 17 16 42 42 H 1.07995 * 119.94715 * 179.73711 * 27 12 11 43 43 H 1.08000 * 120.05005 * 180.23624 * 28 27 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3064 0.0000 0.0000 3 14 2.2405 1.6178 0.0000 4 1 3.0943 1.6964 -1.2125 5 1 1.2755 2.7465 -0.0006 6 1 3.0941 1.6965 1.2125 7 6 2.0076 -1.2144 0.0005 8 1 3.0852 -1.2158 -0.0716 9 6 1.3052 -2.4346 0.0952 10 6 1.8657 -3.5199 0.7973 11 6 1.1836 -4.6969 0.8857 12 6 -0.0718 -4.8283 0.2797 13 6 -0.8062 -6.1053 0.3779 14 8 -0.3209 -7.0406 0.9845 15 7 -2.0145 -6.2343 -0.2051 16 6 -2.7405 -7.5034 -0.1127 17 6 -4.0508 -7.3871 -0.8482 18 6 -5.1837 -6.9623 -0.1780 19 6 -6.3864 -6.8489 -0.8505 20 6 -6.4625 -7.1706 -2.1917 21 6 -5.3283 -7.6028 -2.8658 22 7 -5.4020 -7.9290 -4.2248 23 6 -6.5139 -8.5078 -4.7196 24 7 -6.5526 -8.9012 -6.0081 25 8 -7.4822 -8.6751 -4.0035 26 6 -4.1203 -7.7102 -2.1889 27 6 -0.6302 -3.7544 -0.4241 28 6 0.0420 -2.5719 -0.5133 29 1 -0.4850 0.8401 -0.0004 30 1 2.8342 -3.4196 1.2647 31 1 1.6126 -5.5295 1.4232 32 1 -2.4018 -5.4880 -0.6888 33 1 -2.1424 -8.2975 -0.5596 34 1 -2.9311 -7.7376 0.9346 35 1 -5.1276 -6.7141 0.8716 36 1 -7.2683 -6.5126 -0.3255 37 1 -7.4032 -7.0856 -2.7154 38 1 -4.6527 -7.7383 -4.8106 39 1 -5.7800 -8.7680 -6.5793 40 1 -7.3528 -9.3181 -6.3640 41 1 -3.2363 -8.0458 -2.7106 42 1 -1.5969 -3.8618 -0.8934 43 1 -0.3912 -1.7429 -1.0532 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000340118967.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:17:49 Heat of formation + Delta-G solvation = -47.481891 kcal Electronic energy + Delta-G solvation = -27039.169025 eV Core-core repulsion = 23047.509190 eV Total energy + Delta-G solvation = -3991.659835 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 339.137 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -41.66726 -40.82960 -39.75826 -38.83621 -36.32543 -35.57115 -35.44942 -34.54198 -32.67442 -31.61319 -31.27093 -30.38449 -28.14344 -26.62869 -24.01795 -23.67928 -23.17608 -22.70327 -21.51869 -21.23561 -19.42744 -19.34227 -19.03890 -18.25810 -17.40104 -17.28197 -16.83571 -16.64924 -16.52873 -16.11614 -15.73334 -15.65286 -15.42127 -15.22354 -14.99632 -14.69685 -14.43993 -14.02016 -13.88299 -13.72590 -13.52661 -13.44859 -13.28919 -12.81298 -12.71021 -12.57657 -12.32851 -12.24281 -11.74514 -11.54988 -11.36593 -11.18505 -11.14758 -10.79964 -10.72762 -10.07118 -9.82615 -9.55175 -9.25370 -9.11546 -8.62548 -6.49637 0.25487 0.35347 0.43244 1.15138 1.41546 1.45912 1.53037 1.75408 2.00761 2.15999 2.22050 2.42362 2.83992 2.94425 3.48997 3.62910 3.66836 3.93489 4.18464 4.25357 4.33126 4.35718 4.39251 4.46943 4.52232 4.74801 4.75256 4.95298 4.98314 5.08700 5.17549 5.27054 5.33942 5.36322 5.52508 5.53790 5.62167 5.64589 5.81265 5.82881 5.94757 5.96763 6.04543 6.05803 6.27486 6.59412 6.70408 6.83542 6.91574 6.92423 7.42537 7.51297 8.28287 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.013941 B = 0.002127 C = 0.001974 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2008.008416 B =13161.810221 C =14180.526726 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.819 5.819 2 C 0.031 3.969 3 Si 0.991 3.009 4 H -0.257 1.257 5 H -0.267 1.267 6 H -0.263 1.263 7 C -0.482 4.482 8 H 0.082 0.918 9 C 0.097 3.903 10 C -0.239 4.239 11 C -0.042 4.042 12 C -0.275 4.275 13 C 0.573 3.427 14 O -0.602 6.602 15 N -0.718 5.718 16 C 0.168 3.832 17 C -0.089 4.089 18 C -0.119 4.119 19 C -0.105 4.105 20 C -0.126 4.126 21 C 0.152 3.848 22 N -0.674 5.674 23 C 0.699 3.301 24 N -0.839 5.839 25 O -0.624 6.624 26 C -0.124 4.124 27 C -0.058 4.058 28 C -0.186 4.186 29 H 0.291 0.709 30 H 0.106 0.894 31 H 0.106 0.894 32 H 0.407 0.593 33 H 0.072 0.928 34 H 0.070 0.930 35 H 0.134 0.866 36 H 0.144 0.856 37 H 0.129 0.871 38 H 0.424 0.576 39 H 0.417 0.583 40 H 0.425 0.575 41 H 0.143 0.857 42 H 0.124 0.876 43 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.410 -9.977 -11.970 19.921 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.444 5.444 2 C -0.184 4.184 3 Si 0.811 3.189 4 H -0.181 1.181 5 H -0.191 1.191 6 H -0.187 1.187 7 C -0.511 4.511 8 H 0.100 0.900 9 C 0.094 3.906 10 C -0.259 4.259 11 C -0.061 4.061 12 C -0.280 4.280 13 C 0.366 3.634 14 O -0.486 6.486 15 N -0.370 5.370 16 C 0.045 3.955 17 C -0.090 4.090 18 C -0.138 4.138 19 C -0.123 4.123 20 C -0.147 4.147 21 C 0.056 3.944 22 N -0.324 5.324 23 C 0.398 3.602 24 N -0.409 5.409 25 O -0.504 6.504 26 C -0.145 4.145 27 C -0.077 4.077 28 C -0.205 4.205 29 H 0.102 0.898 30 H 0.124 0.876 31 H 0.124 0.876 32 H 0.244 0.756 33 H 0.091 0.909 34 H 0.088 0.912 35 H 0.152 0.848 36 H 0.161 0.839 37 H 0.147 0.853 38 H 0.263 0.737 39 H 0.248 0.752 40 H 0.259 0.741 41 H 0.160 0.840 42 H 0.141 0.859 43 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -13.031 -10.607 -10.950 20.055 hybrid contribution 0.534 0.924 -0.688 1.270 sum -12.497 -9.683 -11.638 19.631 Atomic orbital electron populations 1.69709 1.08808 1.30866 1.35038 1.26880 0.95815 1.04556 0.91175 0.85105 0.78579 0.75130 0.80069 1.18109 1.19123 1.18734 1.19979 0.95413 0.91076 1.44586 0.89966 1.18205 0.92801 0.92439 0.87140 1.20992 1.02268 0.95270 1.07323 1.20557 0.93466 0.96247 0.95811 1.19282 0.99078 0.94817 1.14780 1.18375 0.80728 0.87217 0.77100 1.90628 1.69625 1.42559 1.45763 1.45818 1.18768 1.15920 1.56481 1.20108 0.89130 0.86188 1.00057 1.19556 0.94415 1.01259 0.93765 1.21270 0.92117 0.99534 1.00867 1.21254 0.98367 0.98863 0.93859 1.21388 0.98668 0.99016 0.95630 1.17492 0.94495 0.98725 0.83656 1.42372 1.18849 1.63106 1.08047 1.16169 0.82644 0.78020 0.83396 1.42769 1.22422 1.66566 1.09103 1.90959 1.36639 1.63236 1.59576 1.20890 0.97383 1.02525 0.93695 1.20800 0.98170 0.92338 0.96424 1.21281 0.97916 0.97108 1.04204 0.89756 0.87596 0.87597 0.75574 0.90940 0.91171 0.84799 0.83865 0.85330 0.73710 0.75195 0.74144 0.83957 0.85869 0.86035 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -39.60 10.59 21.87 0.23 -39.37 16 2 C 0.03 1.48 5.42 85.35 0.46 1.94 16 3 Si 0.99 35.61 29.56 68.60 2.03 37.64 16 4 H -0.26 -8.91 7.11 99.48 0.71 -8.20 16 5 H -0.27 -9.08 7.11 99.48 0.71 -8.37 16 6 H -0.26 -9.36 7.11 99.48 0.71 -8.65 16 7 C -0.48 -24.35 9.03 23.46 0.21 -24.14 16 8 H 0.08 3.97 7.85 -2.91 -0.02 3.95 16 9 C 0.10 5.00 5.55 -21.28 -0.12 4.88 16 10 C -0.24 -11.64 9.73 22.47 0.22 -11.42 16 11 C -0.04 -1.94 9.52 22.25 0.21 -1.73 16 12 C -0.28 -12.14 5.89 -19.93 -0.12 -12.26 16 13 C 0.57 23.07 7.76 86.73 0.67 23.74 16 14 O -0.60 -27.57 16.32 -3.97 -0.06 -27.63 16 15 N -0.72 -21.97 5.50 -469.88 -2.58 -24.55 16 16 C 0.17 4.33 5.80 85.64 0.50 4.82 16 17 C -0.09 -1.93 5.25 -19.88 -0.10 -2.03 16 18 C -0.12 -2.48 9.70 22.29 0.22 -2.26 16 19 C -0.10 -2.14 10.04 22.25 0.22 -1.91 16 20 C -0.13 -2.83 8.69 22.39 0.19 -2.64 16 21 C 0.15 3.03 6.30 38.14 0.24 3.27 16 22 N -0.67 -9.68 5.34 -317.19 -1.69 -11.38 16 23 C 0.70 11.86 8.68 179.06 1.55 13.41 16 24 N -0.84 -5.79 8.88 -184.75 -1.64 -7.43 16 25 O -0.62 -16.52 14.63 -3.98 -0.06 -16.58 16 26 C -0.12 -2.40 9.62 22.39 0.22 -2.19 16 27 C -0.06 -2.49 9.47 22.25 0.21 -2.28 16 28 C -0.19 -9.07 8.61 22.47 0.19 -8.88 16 29 H 0.29 12.72 8.29 -92.71 -0.77 11.95 16 30 H 0.11 4.83 8.06 -2.91 -0.02 4.81 16 31 H 0.11 4.78 7.63 -2.91 -0.02 4.76 16 32 H 0.41 11.19 6.47 -92.71 -0.60 10.59 16 33 H 0.07 1.87 8.08 -2.39 -0.02 1.85 16 34 H 0.07 1.88 8.08 -2.39 -0.02 1.86 16 35 H 0.13 2.54 8.06 -2.91 -0.02 2.52 16 36 H 0.14 2.33 8.06 -2.91 -0.02 2.31 16 37 H 0.13 3.18 6.24 -2.91 -0.02 3.16 16 38 H 0.42 3.09 8.84 -92.71 -0.82 2.27 16 39 H 0.42 0.04 8.85 -92.71 -0.82 -0.79 16 40 H 0.42 2.21 8.93 -92.71 -0.83 1.38 16 41 H 0.14 2.27 8.06 -2.91 -0.02 2.25 16 42 H 0.12 4.30 6.37 -2.91 -0.02 4.28 16 43 H 0.12 6.12 6.13 -2.91 -0.02 6.10 16 Total: -1.00 -70.20 371.21 -0.74 -70.94 By element: Atomic # 1 Polarization: 39.99 SS G_CDS: -1.95 Total: 38.04 kcal Atomic # 6 Polarization: -24.66 SS G_CDS: 4.98 Total: -19.68 kcal Atomic # 7 Polarization: -77.04 SS G_CDS: -5.69 Total: -82.73 kcal Atomic # 8 Polarization: -44.09 SS G_CDS: -0.12 Total: -44.21 kcal Atomic # 14 Polarization: 35.61 SS G_CDS: 2.03 Total: 37.64 kcal Total: -70.20 -0.74 -70.94 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000340118967.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.460 kcal (2) G-P(sol) polarization free energy of solvation -70.197 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.737 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.745 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.942 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.482 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds