Wall clock time and date at job start Tue Mar 31 2020 22:23:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30650 * 1 3 3 Si 1.86799 * 119.99537 * 2 1 4 4 H 1.48492 * 109.47238 * 269.99612 * 3 2 1 5 5 H 1.48499 * 109.47573 * 29.99831 * 3 2 1 6 6 H 1.48503 * 109.47126 * 149.99919 * 3 2 1 7 7 C 1.40220 * 120.00072 * 179.97438 * 2 1 3 8 8 H 1.08005 * 119.99951 * 185.59106 * 7 2 1 9 9 C 1.41103 * 120.00436 * 5.58791 * 7 2 1 10 10 C 1.40893 * 120.10757 * 214.19237 * 9 7 2 11 11 C 1.36308 * 119.89338 * 180.02562 * 10 9 7 12 12 C 1.40017 * 120.10915 * 0.02562 * 11 10 9 13 13 C 1.47640 * 119.89513 * 179.97438 * 12 11 10 14 14 O 1.21586 * 120.00202 * 359.97438 * 13 12 11 15 15 N 1.34782 * 119.99711 * 180.02562 * 13 12 11 16 16 C 1.46500 * 119.99907 * 179.97438 * 15 13 12 17 17 C 1.52996 * 109.46947 * 179.97438 * 16 15 13 18 18 C 1.50704 * 109.47086 * 179.97438 * 17 16 15 19 19 O 1.21296 * 119.99801 * 0.02562 * 18 17 16 20 20 N 1.34771 * 120.00290 * 180.27691 * 18 17 16 21 21 C 1.39950 * 120.00293 * 174.07050 * 20 18 17 22 22 C 1.39286 * 120.48759 * 325.37731 * 21 20 18 23 23 C 1.38504 * 118.35928 * 179.73691 * 22 21 20 24 24 C 1.38272 * 119.23814 * 0.53375 * 23 22 21 25 25 N 1.31860 * 120.91538 * 359.72930 * 24 23 22 26 26 C 1.31817 * 121.79588 * 359.97438 * 25 24 23 27 27 C 1.40011 * 120.20790 * 0.24918 * 12 11 10 28 28 C 1.36319 * 120.10588 * 359.48499 * 27 12 11 29 29 H 0.96990 * 120.00246 * 0.02562 * 1 2 3 30 30 H 1.07998 * 120.04941 * 359.97438 * 10 9 7 31 31 H 1.08004 * 119.95020 * 179.97438 * 11 10 9 32 32 H 0.96995 * 120.00215 * 359.97438 * 15 13 12 33 33 H 1.09000 * 109.46887 * 59.99585 * 16 15 13 34 34 H 1.08994 * 109.47169 * 299.99707 * 16 15 13 35 35 H 1.09000 * 109.47179 * 60.00360 * 17 16 15 36 36 H 1.08994 * 109.47434 * 300.00141 * 17 16 15 37 37 H 0.97005 * 119.99718 * 354.07832 * 20 18 17 38 38 H 1.08003 * 120.81616 * 0.02562 * 22 21 20 39 39 H 1.08005 * 120.38226 * 180.26819 * 23 22 21 40 40 H 1.07994 * 119.53950 * 179.75037 * 24 23 22 41 41 H 1.08006 * 119.66652 * 179.97438 * 26 25 24 42 42 H 1.08000 * 119.94862 * 179.74843 * 27 12 11 43 43 H 1.07994 * 120.05715 * 180.22949 * 28 27 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3065 0.0000 0.0000 3 14 2.2404 1.6178 0.0000 4 1 2.4879 2.0465 -1.4000 5 1 1.4378 2.6527 0.7000 6 1 3.5380 1.4403 0.7001 7 6 2.0076 -1.2143 0.0005 8 1 3.0838 -1.2165 0.0917 9 6 1.3072 -2.4335 -0.1179 10 6 1.7698 -3.5824 0.5538 11 6 1.0901 -4.7581 0.4359 12 6 -0.0657 -4.8253 -0.3516 13 6 -0.7979 -6.1013 -0.4764 14 8 -0.3968 -7.0917 0.1037 15 7 -1.9104 -6.1684 -1.2343 16 6 -2.6367 -7.4346 -1.3587 17 6 -3.8518 -7.2384 -2.2674 18 6 -4.5986 -8.5411 -2.3958 19 8 -4.1984 -9.5291 -1.8170 20 7 -5.7081 -8.6096 -3.1578 21 6 -6.3309 -9.8434 -3.3778 22 6 -5.5740 -11.0075 -3.4874 23 6 -6.2363 -12.2053 -3.6996 24 6 -7.6149 -12.2052 -3.8059 25 7 -8.3022 -11.0846 -3.7029 26 6 -7.7120 -9.9244 -3.4953 27 6 -0.5260 -3.6877 -1.0256 28 6 0.1439 -2.5062 -0.9094 29 1 -0.4850 0.8399 -0.0004 30 1 2.6618 -3.5318 1.1604 31 1 1.4440 -5.6394 0.9501 32 1 -2.2302 -5.3784 -1.6974 33 1 -2.9692 -7.7610 -0.3733 34 1 -1.9790 -8.1899 -1.7888 35 1 -3.5196 -6.9119 -3.2528 36 1 -4.5093 -6.4832 -1.8369 37 1 -6.0749 -7.8036 -3.5539 38 1 -4.4976 -10.9774 -3.4043 39 1 -5.6819 -13.1283 -3.7852 40 1 -8.1359 -13.1358 -3.9754 41 1 -8.3086 -9.0275 -3.4169 42 1 -1.4157 -3.7453 -1.6351 43 1 -0.2139 -1.6284 -1.4267 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000340140083.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:23:01 Heat of formation + Delta-G solvation = -22.329307 kcal Electronic energy + Delta-G solvation = -26508.384031 eV Core-core repulsion = 22517.814894 eV Total energy + Delta-G solvation = -3990.569137 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 339.137 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -41.22631 -39.70200 -39.05729 -37.18825 -35.60339 -34.83630 -33.81394 -32.57561 -31.61155 -30.40885 -29.56590 -29.45273 -26.16439 -24.72580 -24.07283 -22.99288 -21.76341 -21.00216 -20.77653 -19.75858 -18.35118 -17.55433 -17.48885 -17.28560 -16.76870 -16.56624 -15.94559 -15.56165 -15.17677 -14.68206 -14.61374 -14.19022 -14.12443 -14.05372 -13.77821 -13.47509 -13.23270 -13.16750 -12.74331 -12.55864 -12.22741 -11.95991 -11.92683 -11.66686 -11.47894 -11.33043 -11.30223 -10.95994 -10.63752 -10.59792 -10.09436 -10.01325 -9.76428 -9.58033 -9.47120 -9.05590 -8.77736 -8.69498 -7.77192 -7.48075 -6.95543 -4.64664 0.61314 0.88776 2.14187 2.16132 2.42920 2.92083 2.95189 2.96805 2.99560 3.43547 3.65949 3.75843 3.85461 4.09494 4.27925 4.43459 4.51126 4.57072 4.63783 4.72078 4.77018 4.93786 5.14267 5.19015 5.48525 5.59287 5.74801 5.76205 5.80478 5.81752 5.96140 6.12137 6.26295 6.34396 6.72303 6.78844 6.81053 6.85385 6.97524 7.08390 7.41768 7.53195 7.57805 7.62586 7.70910 7.83562 8.05681 8.13256 8.38539 8.62518 8.71010 8.98733 9.97799 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.028100 B = 0.001622 C = 0.001546 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 996.198542 B =17259.647915 C =18108.319058 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.790 5.790 2 C 0.072 3.928 3 Si 0.917 3.083 4 H -0.266 1.266 5 H -0.276 1.276 6 H -0.260 1.260 7 C -0.451 4.451 8 H 0.083 0.917 9 C 0.131 3.869 10 C -0.229 4.229 11 C -0.028 4.028 12 C -0.273 4.273 13 C 0.572 3.428 14 O -0.569 6.569 15 N -0.744 5.744 16 C 0.139 3.861 17 C -0.152 4.152 18 C 0.521 3.479 19 O -0.511 6.511 20 N -0.673 5.673 21 C 0.100 3.900 22 C -0.079 4.079 23 C -0.150 4.150 24 C 0.078 3.922 25 N -0.467 5.467 26 C 0.076 3.924 27 C -0.068 4.068 28 C -0.165 4.165 29 H 0.284 0.716 30 H 0.100 0.900 31 H 0.102 0.898 32 H 0.397 0.603 33 H 0.071 0.929 34 H 0.071 0.929 35 H 0.107 0.893 36 H 0.106 0.894 37 H 0.415 0.585 38 H 0.145 0.855 39 H 0.139 0.861 40 H 0.158 0.842 41 H 0.158 0.842 42 H 0.090 0.910 43 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.138 -11.400 -10.421 20.939 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.415 5.415 2 C -0.147 4.147 3 Si 0.741 3.259 4 H -0.191 1.191 5 H -0.201 1.201 6 H -0.184 1.184 7 C -0.480 4.480 8 H 0.101 0.899 9 C 0.128 3.872 10 C -0.248 4.248 11 C -0.047 4.047 12 C -0.278 4.278 13 C 0.366 3.634 14 O -0.450 6.450 15 N -0.398 5.398 16 C 0.014 3.986 17 C -0.192 4.192 18 C 0.308 3.692 19 O -0.384 6.384 20 N -0.320 5.320 21 C 0.003 3.997 22 C -0.107 4.107 23 C -0.171 4.171 24 C -0.080 4.080 25 N -0.176 5.176 26 C -0.084 4.084 27 C -0.087 4.087 28 C -0.184 4.184 29 H 0.095 0.905 30 H 0.118 0.882 31 H 0.121 0.879 32 H 0.232 0.768 33 H 0.089 0.911 34 H 0.089 0.911 35 H 0.125 0.875 36 H 0.125 0.875 37 H 0.252 0.748 38 H 0.163 0.837 39 H 0.157 0.843 40 H 0.175 0.825 41 H 0.175 0.825 42 H 0.108 0.892 43 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges -14.618 -12.645 -9.633 21.596 hybrid contribution 0.752 1.671 -0.307 1.858 sum -13.866 -10.974 -9.940 20.285 Atomic orbital electron populations 1.69684 1.07634 1.29691 1.34462 1.26022 0.94956 1.01584 0.92119 0.86149 0.80387 0.79898 0.79426 1.19142 1.20065 1.18410 1.19779 0.95393 0.90166 1.42699 0.89877 1.17831 0.90916 0.92049 0.86450 1.20849 1.03567 0.94091 1.06338 1.20407 0.92878 0.96695 0.94713 1.18960 1.02701 0.92454 1.13657 1.18582 0.78940 0.88968 0.76886 1.90664 1.68189 1.38163 1.47999 1.45866 1.28876 1.11998 1.53109 1.20835 0.91146 0.87230 0.99394 1.21859 0.98460 0.95284 1.03619 1.20786 0.79843 0.91229 0.77338 1.90784 1.65794 1.37807 1.44008 1.43531 1.28471 1.08594 1.51400 1.18822 0.92965 0.86908 1.00959 1.21648 1.01539 0.91392 0.96097 1.22116 0.95869 0.98748 1.00325 1.22746 0.91514 0.96540 0.97155 1.67651 1.40253 0.98364 1.11290 1.22620 0.89875 0.96765 0.99190 1.20500 0.97468 0.93117 0.97619 1.21013 0.99005 0.96263 1.02102 0.90476 0.88194 0.87947 0.76774 0.91070 0.91096 0.87491 0.87539 0.74800 0.83748 0.84291 0.82503 0.82514 0.89218 0.86151 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -18.81 10.95 55.56 0.61 -18.20 16 2 C 0.07 1.67 5.31 -17.31 -0.09 1.58 16 3 Si 0.92 17.31 29.57 -169.99 -5.03 12.28 16 4 H -0.27 -4.94 7.11 56.52 0.40 -4.54 16 5 H -0.28 -5.12 7.11 56.52 0.40 -4.72 16 6 H -0.26 -4.89 7.11 56.52 0.40 -4.49 16 7 C -0.45 -11.11 9.03 -37.75 -0.34 -11.45 16 8 H 0.08 1.96 7.86 -52.48 -0.41 1.55 16 9 C 0.13 3.26 5.51 -106.80 -0.59 2.67 16 10 C -0.23 -5.44 9.73 -39.27 -0.38 -5.82 16 11 C -0.03 -0.64 9.52 -39.61 -0.38 -1.02 16 12 C -0.27 -6.03 5.89 -104.73 -0.62 -6.65 16 13 C 0.57 11.80 7.76 -12.42 -0.10 11.71 16 14 O -0.57 -13.53 16.32 5.29 0.09 -13.45 16 15 N -0.74 -11.41 5.50 -61.32 -0.34 -11.75 16 16 C 0.14 1.84 4.96 -4.04 -0.02 1.82 16 17 C -0.15 -1.21 5.82 -27.88 -0.16 -1.37 16 18 C 0.52 4.94 7.58 -10.99 -0.08 4.85 16 19 O -0.51 -6.98 13.82 5.54 0.08 -6.90 16 20 N -0.67 -4.59 5.35 -9.76 -0.05 -4.64 16 21 C 0.10 0.86 6.27 -83.54 -0.52 0.34 16 22 C -0.08 -0.74 8.77 -39.09 -0.34 -1.08 16 23 C -0.15 -1.16 10.10 -39.47 -0.40 -1.56 16 24 C 0.08 0.61 11.18 -17.53 -0.20 0.41 16 25 N -0.47 -4.41 10.35 -13.09 -0.14 -4.54 16 26 C 0.08 0.61 11.12 -17.33 -0.19 0.42 16 27 C -0.07 -1.43 9.47 -39.61 -0.38 -1.80 16 28 C -0.16 -3.89 8.57 -39.27 -0.34 -4.23 16 29 H 0.28 6.13 8.29 -40.82 -0.34 5.79 16 30 H 0.10 2.22 8.06 -52.49 -0.42 1.80 16 31 H 0.10 2.30 7.63 -52.48 -0.40 1.90 16 32 H 0.40 5.04 6.47 -40.82 -0.26 4.78 16 33 H 0.07 1.08 8.10 -51.93 -0.42 0.66 16 34 H 0.07 1.05 8.10 -51.93 -0.42 0.63 16 35 H 0.11 0.61 8.14 -51.93 -0.42 0.19 16 36 H 0.11 0.62 8.14 -51.93 -0.42 0.20 16 37 H 0.42 1.33 8.83 -40.82 -0.36 0.97 16 38 H 0.14 1.48 6.63 -52.48 -0.35 1.13 16 39 H 0.14 0.74 8.06 -52.48 -0.42 0.31 16 40 H 0.16 0.79 8.06 -52.49 -0.42 0.37 16 41 H 0.16 0.85 8.06 -52.48 -0.42 0.43 16 42 H 0.09 1.53 6.37 -52.49 -0.33 1.20 16 43 H 0.12 2.89 6.45 -52.49 -0.34 2.55 16 LS Contribution 373.03 15.07 5.62 5.62 Total: -1.00 -32.80 373.03 -9.25 -42.06 By element: Atomic # 1 Polarization: 15.67 SS G_CDS: -4.97 Total: 10.70 kcal Atomic # 6 Polarization: -6.04 SS G_CDS: -5.12 Total: -11.17 kcal Atomic # 7 Polarization: -39.22 SS G_CDS: 0.08 Total: -39.14 kcal Atomic # 8 Polarization: -20.51 SS G_CDS: 0.16 Total: -20.35 kcal Atomic # 14 Polarization: 17.31 SS G_CDS: -5.03 Total: 12.28 kcal Total LS contribution 5.62 Total: 5.62 kcal Total: -32.80 -9.25 -42.06 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000340140083.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.726 kcal (2) G-P(sol) polarization free energy of solvation -32.801 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.075 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.254 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.055 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.329 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds