Wall clock time and date at job start Tue Mar 31 2020 22:23:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30650 * 1 3 3 Si 1.86799 * 119.99537 * 2 1 4 4 H 1.48492 * 109.47238 * 269.99612 * 3 2 1 5 5 H 1.48499 * 109.47573 * 29.99831 * 3 2 1 6 6 H 1.48503 * 109.47126 * 149.99919 * 3 2 1 7 7 C 1.40220 * 120.00072 * 179.97438 * 2 1 3 8 8 H 1.08005 * 119.99951 * 185.59106 * 7 2 1 9 9 C 1.41103 * 120.00436 * 5.58791 * 7 2 1 10 10 C 1.40893 * 120.10757 * 214.19237 * 9 7 2 11 11 C 1.36308 * 119.89338 * 180.02562 * 10 9 7 12 12 C 1.40017 * 120.10915 * 0.02562 * 11 10 9 13 13 C 1.47640 * 119.89513 * 179.97438 * 12 11 10 14 14 O 1.21586 * 120.00202 * 359.97438 * 13 12 11 15 15 N 1.34782 * 119.99711 * 180.02562 * 13 12 11 16 16 C 1.46500 * 119.99907 * 179.97438 * 15 13 12 17 17 C 1.52996 * 109.46947 * 179.97438 * 16 15 13 18 18 C 1.50704 * 109.47086 * 179.97438 * 17 16 15 19 19 O 1.21296 * 119.99801 * 0.02562 * 18 17 16 20 20 N 1.34771 * 120.00290 * 180.27691 * 18 17 16 21 21 C 1.39950 * 120.00293 * 174.07050 * 20 18 17 22 22 C 1.39286 * 120.48759 * 325.37731 * 21 20 18 23 23 C 1.38504 * 118.35928 * 179.73691 * 22 21 20 24 24 C 1.38272 * 119.23814 * 0.53375 * 23 22 21 25 25 N 1.31860 * 120.91538 * 359.72930 * 24 23 22 26 26 C 1.31817 * 121.79588 * 359.97438 * 25 24 23 27 27 C 1.40011 * 120.20790 * 0.24918 * 12 11 10 28 28 C 1.36319 * 120.10588 * 359.48499 * 27 12 11 29 29 H 0.96990 * 120.00246 * 0.02562 * 1 2 3 30 30 H 1.07998 * 120.04941 * 359.97438 * 10 9 7 31 31 H 1.08004 * 119.95020 * 179.97438 * 11 10 9 32 32 H 0.96995 * 120.00215 * 359.97438 * 15 13 12 33 33 H 1.09000 * 109.46887 * 59.99585 * 16 15 13 34 34 H 1.08994 * 109.47169 * 299.99707 * 16 15 13 35 35 H 1.09000 * 109.47179 * 60.00360 * 17 16 15 36 36 H 1.08994 * 109.47434 * 300.00141 * 17 16 15 37 37 H 0.97005 * 119.99718 * 354.07832 * 20 18 17 38 38 H 1.08003 * 120.81616 * 0.02562 * 22 21 20 39 39 H 1.08005 * 120.38226 * 180.26819 * 23 22 21 40 40 H 1.07994 * 119.53950 * 179.75037 * 24 23 22 41 41 H 1.08006 * 119.66652 * 179.97438 * 26 25 24 42 42 H 1.08000 * 119.94862 * 179.74843 * 27 12 11 43 43 H 1.07994 * 120.05715 * 180.22949 * 28 27 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3065 0.0000 0.0000 3 14 2.2404 1.6178 0.0000 4 1 2.4879 2.0465 -1.4000 5 1 1.4378 2.6527 0.7000 6 1 3.5380 1.4403 0.7001 7 6 2.0076 -1.2143 0.0005 8 1 3.0838 -1.2165 0.0917 9 6 1.3072 -2.4335 -0.1179 10 6 1.7698 -3.5824 0.5538 11 6 1.0901 -4.7581 0.4359 12 6 -0.0657 -4.8253 -0.3516 13 6 -0.7979 -6.1013 -0.4764 14 8 -0.3968 -7.0917 0.1037 15 7 -1.9104 -6.1684 -1.2343 16 6 -2.6367 -7.4346 -1.3587 17 6 -3.8518 -7.2384 -2.2674 18 6 -4.5986 -8.5411 -2.3958 19 8 -4.1984 -9.5291 -1.8170 20 7 -5.7081 -8.6096 -3.1578 21 6 -6.3309 -9.8434 -3.3778 22 6 -5.5740 -11.0075 -3.4874 23 6 -6.2363 -12.2053 -3.6996 24 6 -7.6149 -12.2052 -3.8059 25 7 -8.3022 -11.0846 -3.7029 26 6 -7.7120 -9.9244 -3.4953 27 6 -0.5260 -3.6877 -1.0256 28 6 0.1439 -2.5062 -0.9094 29 1 -0.4850 0.8399 -0.0004 30 1 2.6618 -3.5318 1.1604 31 1 1.4440 -5.6394 0.9501 32 1 -2.2302 -5.3784 -1.6974 33 1 -2.9692 -7.7610 -0.3733 34 1 -1.9790 -8.1899 -1.7888 35 1 -3.5196 -6.9119 -3.2528 36 1 -4.5093 -6.4832 -1.8369 37 1 -6.0749 -7.8036 -3.5539 38 1 -4.4976 -10.9774 -3.4043 39 1 -5.6819 -13.1283 -3.7852 40 1 -8.1359 -13.1358 -3.9754 41 1 -8.3086 -9.0275 -3.4169 42 1 -1.4157 -3.7453 -1.6351 43 1 -0.2139 -1.6284 -1.4267 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000340140083.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:23:00 Heat of formation + Delta-G solvation = -44.327172 kcal Electronic energy + Delta-G solvation = -26509.337930 eV Core-core repulsion = 22517.814894 eV Total energy + Delta-G solvation = -3991.523036 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 339.137 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -41.90141 -40.84640 -40.24154 -38.91145 -36.42499 -36.05080 -35.57786 -33.25495 -32.74313 -31.69672 -31.31371 -30.51077 -27.79022 -25.74036 -24.76375 -23.94371 -23.26190 -22.68238 -21.68183 -21.21358 -19.32996 -19.08818 -18.35789 -18.27725 -17.79342 -17.33699 -17.18981 -16.80486 -16.51153 -15.80542 -15.73180 -15.44291 -15.33597 -15.00046 -14.91921 -14.71218 -14.46994 -14.40354 -14.03114 -13.86805 -13.64499 -13.30477 -13.13785 -12.94931 -12.84505 -12.63639 -12.48739 -12.34318 -12.01557 -11.72312 -11.39330 -11.36598 -11.16531 -10.78297 -10.72189 -10.39600 -10.12242 -9.56410 -9.38586 -9.29168 -8.68649 -6.49112 0.00266 0.24520 0.41631 1.13783 1.42024 1.43867 1.44958 1.54614 1.72968 2.14002 2.21133 2.46780 2.82521 2.83193 3.48559 3.59409 3.66314 3.78228 3.85596 4.01080 4.04950 4.10928 4.25301 4.33107 4.35920 4.44052 4.50343 4.66975 4.81276 4.91955 4.93858 5.00775 5.08196 5.14647 5.15503 5.20632 5.30724 5.49538 5.62454 5.74504 5.80500 5.92811 6.01606 6.25915 6.26221 6.56811 6.70160 6.81466 6.89664 6.93015 6.99999 7.41940 8.27211 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.028100 B = 0.001622 C = 0.001546 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 996.198542 B =17259.647915 C =18108.319058 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.816 5.816 2 C 0.036 3.964 3 Si 0.988 3.012 4 H -0.258 1.258 5 H -0.267 1.267 6 H -0.262 1.262 7 C -0.485 4.485 8 H 0.081 0.919 9 C 0.103 3.897 10 C -0.243 4.243 11 C -0.041 4.041 12 C -0.279 4.279 13 C 0.570 3.430 14 O -0.607 6.607 15 N -0.720 5.720 16 C 0.138 3.862 17 C -0.136 4.136 18 C 0.521 3.479 19 O -0.561 6.561 20 N -0.653 5.653 21 C 0.088 3.912 22 C -0.099 4.099 23 C -0.152 4.152 24 C 0.073 3.927 25 N -0.491 5.491 26 C 0.075 3.925 27 C -0.054 4.054 28 C -0.182 4.182 29 H 0.293 0.707 30 H 0.103 0.897 31 H 0.101 0.899 32 H 0.414 0.586 33 H 0.049 0.951 34 H 0.052 0.948 35 H 0.141 0.859 36 H 0.140 0.860 37 H 0.435 0.565 38 H 0.130 0.870 39 H 0.159 0.841 40 H 0.182 0.818 41 H 0.183 0.817 42 H 0.135 0.865 43 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.148 -10.276 -12.001 22.592 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.441 5.441 2 C -0.180 4.180 3 Si 0.809 3.191 4 H -0.183 1.183 5 H -0.192 1.192 6 H -0.186 1.186 7 C -0.513 4.513 8 H 0.099 0.901 9 C 0.100 3.900 10 C -0.262 4.262 11 C -0.060 4.060 12 C -0.283 4.283 13 C 0.363 3.637 14 O -0.491 6.491 15 N -0.373 5.373 16 C 0.014 3.986 17 C -0.176 4.176 18 C 0.310 3.690 19 O -0.438 6.438 20 N -0.301 5.301 21 C -0.008 4.008 22 C -0.128 4.128 23 C -0.172 4.172 24 C -0.083 4.083 25 N -0.199 5.199 26 C -0.085 4.085 27 C -0.073 4.073 28 C -0.201 4.201 29 H 0.104 0.896 30 H 0.121 0.879 31 H 0.119 0.881 32 H 0.252 0.748 33 H 0.067 0.933 34 H 0.070 0.930 35 H 0.159 0.841 36 H 0.158 0.842 37 H 0.275 0.725 38 H 0.147 0.853 39 H 0.177 0.823 40 H 0.199 0.801 41 H 0.200 0.800 42 H 0.153 0.847 43 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges -16.696 -11.494 -11.273 23.194 hybrid contribution 1.295 1.177 0.168 1.758 sum -15.401 -10.317 -11.105 21.609 Atomic orbital electron populations 1.69711 1.08810 1.31110 1.34424 1.26808 0.95740 1.04384 0.91111 0.85092 0.78832 0.75500 0.79695 1.18278 1.19180 1.18551 1.20014 0.95587 0.91189 1.44544 0.90092 1.18185 0.92025 0.92588 0.87221 1.20963 1.04081 0.94329 1.06865 1.20551 0.93698 0.96465 0.95333 1.19241 1.02402 0.93642 1.13062 1.18441 0.80083 0.87813 0.77346 1.90649 1.69535 1.39112 1.49789 1.45598 1.27030 1.13517 1.51144 1.20845 0.92670 0.85540 0.99531 1.21772 0.96377 0.95189 1.04250 1.21028 0.80124 0.91029 0.76854 1.90782 1.67234 1.39516 1.46273 1.43311 1.27448 1.08973 1.50413 1.18929 0.93331 0.87237 1.01337 1.21737 1.01127 0.92699 0.97197 1.22358 0.96143 0.99069 0.99640 1.23189 0.91666 0.97187 0.96306 1.67699 1.40979 0.99149 1.12107 1.23000 0.89812 0.97390 0.98289 1.20810 0.98155 0.91511 0.96835 1.21050 0.99368 0.97083 1.02620 0.89562 0.87884 0.88079 0.74762 0.93287 0.92990 0.84111 0.84246 0.72474 0.85256 0.82331 0.80053 0.80001 0.84730 0.86704 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -38.54 10.95 21.87 0.24 -38.30 16 2 C 0.04 1.66 5.31 85.35 0.45 2.11 16 3 Si 0.99 34.91 29.57 68.60 2.03 36.94 16 4 H -0.26 -8.74 7.11 99.48 0.71 -8.03 16 5 H -0.27 -9.01 7.11 99.48 0.71 -8.30 16 6 H -0.26 -9.20 7.11 99.48 0.71 -8.50 16 7 C -0.48 -24.29 9.03 23.46 0.21 -24.07 16 8 H 0.08 3.92 7.86 -2.91 -0.02 3.90 16 9 C 0.10 5.23 5.51 -21.28 -0.12 5.11 16 10 C -0.24 -11.88 9.73 22.47 0.22 -11.66 16 11 C -0.04 -1.95 9.52 22.25 0.21 -1.73 16 12 C -0.28 -12.17 5.89 -19.93 -0.12 -12.29 16 13 C 0.57 23.11 7.76 86.73 0.67 23.78 16 14 O -0.61 -29.20 16.32 -3.99 -0.07 -29.27 16 15 N -0.72 -20.45 5.50 -466.17 -2.57 -23.02 16 16 C 0.14 3.49 4.96 86.38 0.43 3.92 16 17 C -0.14 -1.71 5.82 29.85 0.17 -1.53 16 18 C 0.52 8.98 7.58 87.66 0.66 9.65 16 19 O -0.56 -15.40 13.82 -3.08 -0.04 -15.44 16 20 N -0.65 -7.40 5.35 -303.19 -1.62 -9.02 16 21 C 0.09 1.40 6.27 38.24 0.24 1.64 16 22 C -0.10 -1.84 8.77 22.59 0.20 -1.64 16 23 C -0.15 -2.22 10.10 22.34 0.23 -1.99 16 24 C 0.07 1.05 11.18 84.70 0.95 1.99 16 25 N -0.49 -8.51 10.35 -195.33 -2.02 -10.53 16 26 C 0.07 1.08 11.12 84.84 0.94 2.02 16 27 C -0.05 -2.20 9.47 22.25 0.21 -1.98 16 28 C -0.18 -8.56 8.57 22.47 0.19 -8.36 16 29 H 0.29 12.40 8.29 -92.72 -0.77 11.63 16 30 H 0.10 4.78 8.06 -2.91 -0.02 4.76 16 31 H 0.10 4.70 7.63 -2.91 -0.02 4.68 16 32 H 0.41 8.87 6.47 -92.71 -0.60 8.26 16 33 H 0.05 1.48 8.10 -2.39 -0.02 1.46 16 34 H 0.05 1.54 8.10 -2.39 -0.02 1.52 16 35 H 0.14 0.91 8.14 -2.39 -0.02 0.89 16 36 H 0.14 0.93 8.14 -2.39 -0.02 0.91 16 37 H 0.43 1.24 8.83 -92.70 -0.82 0.43 16 38 H 0.13 2.75 6.63 -2.91 -0.02 2.73 16 39 H 0.16 1.52 8.06 -2.91 -0.02 1.50 16 40 H 0.18 1.49 8.06 -2.91 -0.02 1.46 16 41 H 0.18 1.48 8.06 -2.91 -0.02 1.46 16 42 H 0.14 4.09 6.37 -2.91 -0.02 4.07 16 43 H 0.12 5.49 6.45 -2.91 -0.02 5.47 16 Total: -1.00 -74.75 373.03 1.37 -73.39 By element: Atomic # 1 Polarization: 30.63 SS G_CDS: -0.34 Total: 30.29 kcal Atomic # 6 Polarization: -20.80 SS G_CDS: 5.76 Total: -15.05 kcal Atomic # 7 Polarization: -74.89 SS G_CDS: -5.97 Total: -80.86 kcal Atomic # 8 Polarization: -44.60 SS G_CDS: -0.11 Total: -44.71 kcal Atomic # 14 Polarization: 34.91 SS G_CDS: 2.03 Total: 36.94 kcal Total: -74.75 1.37 -73.39 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000340140083.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.059 kcal (2) G-P(sol) polarization free energy of solvation -74.754 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.695 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.368 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.386 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.327 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds