Wall clock time and date at job start Tue Mar 31 2020 22:52:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50707 * 1 3 3 C 1.37839 * 120.01752 * 2 1 4 4 C 1.39041 * 120.04570 * 180.02562 * 3 2 1 5 5 N 1.39549 * 119.95779 * 179.97438 * 4 3 2 6 6 C 1.34783 * 119.99909 * 33.49830 * 5 4 3 7 7 O 1.21374 * 119.99767 * 5.28414 * 6 5 4 8 8 C 1.49344 * 119.99853 * 185.28116 * 6 5 4 9 9 O 1.21355 * 120.00316 * 359.97438 * 8 6 5 10 10 N 1.34780 * 119.99913 * 180.02562 * 8 6 5 11 11 C 1.46493 * 120.00023 * 179.97438 * 10 8 6 12 12 C 1.50706 * 109.47269 * 179.97438 * 11 10 8 13 13 H 1.08007 * 119.99573 * 0.02562 * 12 11 10 14 14 C 1.37868 * 120.00458 * 180.02562 * 12 11 10 15 15 N 1.31524 * 119.99774 * 359.97438 * 14 12 11 16 16 Si 1.86800 * 120.00436 * 180.02562 * 14 12 11 17 17 H 1.48507 * 109.47118 * 89.99479 * 16 14 12 18 18 H 1.48494 * 109.47358 * 209.99769 * 16 14 12 19 19 H 1.48504 * 109.46882 * 330.00070 * 16 14 12 20 20 C 1.39089 * 120.09054 * 0.02562 * 4 3 2 21 21 C 1.37796 * 120.04129 * 359.71217 * 20 4 3 22 22 C 1.39419 * 120.02835 * 180.02562 * 2 1 3 23 23 C 1.48293 * 120.04281 * 359.97438 * 22 2 1 24 24 C 1.39811 * 120.91086 * 310.27128 * 23 22 2 25 25 C 1.37954 * 119.01576 * 180.24292 * 24 23 22 26 26 N 1.31939 * 120.88519 * 359.47941 * 25 24 23 27 27 C 1.31946 * 122.01338 * 0.27552 * 26 25 24 28 28 C 1.37954 * 120.88301 * 359.97438 * 27 26 25 29 29 H 1.08992 * 109.47366 * 269.97428 * 1 2 3 30 30 H 1.09003 * 109.47072 * 29.98252 * 1 2 3 31 31 H 1.09005 * 109.46249 * 149.97592 * 1 2 3 32 32 H 1.07995 * 119.98010 * 0.02562 * 3 2 1 33 33 H 0.96997 * 120.00663 * 213.50255 * 5 4 3 34 34 H 0.96999 * 119.99642 * 359.97438 * 10 8 6 35 35 H 1.08997 * 109.47445 * 299.99384 * 11 10 8 36 36 H 1.09000 * 109.47354 * 59.99877 * 11 10 8 37 37 H 0.97001 * 119.99694 * 180.02562 * 15 14 12 38 38 H 1.07989 * 119.97627 * 179.97438 * 20 4 3 39 39 H 1.08007 * 120.01849 * 180.27497 * 21 20 4 40 40 H 1.08001 * 120.49379 * 0.02562 * 24 23 22 41 41 H 1.07996 * 119.55327 * 179.75543 * 25 24 23 42 42 H 1.07998 * 119.55612 * 180.02562 * 27 26 25 43 43 H 1.07997 * 120.48783 * 180.02562 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1966 1.1935 0.0000 4 6 3.5870 1.1942 -0.0005 5 7 4.2833 2.4036 -0.0011 6 6 3.7762 3.4734 0.6431 7 8 2.7639 3.3607 1.3031 8 6 4.4600 4.7975 0.5448 9 8 5.4725 4.9101 -0.1147 10 7 3.9532 5.8671 1.1894 11 6 4.6243 7.1658 1.0934 12 6 3.8614 8.1862 1.8984 13 1 2.9664 7.8961 2.4288 14 6 4.3059 9.4899 1.9577 15 7 5.3960 9.8430 1.3122 16 14 3.3606 10.7546 2.9561 17 1 3.8800 10.7758 4.3472 18 1 3.5309 12.0965 2.3436 19 1 1.9195 10.3965 2.9713 20 6 4.2850 -0.0089 -0.0016 21 6 3.5993 -1.2042 0.0038 22 6 2.2048 -1.2071 -0.0005 23 6 1.4649 -2.4922 -0.0005 24 6 0.4349 -2.7280 0.9150 25 6 -0.2241 -3.9396 0.8835 26 7 0.0994 -4.8637 -0.0009 27 6 1.0613 -4.6795 -0.8850 28 6 1.7745 -3.4991 -0.9200 29 1 -0.3633 -0.0005 1.0276 30 1 -0.3633 0.8902 -0.5136 31 1 -0.3632 -0.8899 -0.5143 32 1 1.6566 2.1288 0.0004 33 1 5.1321 2.4744 -0.4651 34 1 3.1442 5.7770 1.7168 35 1 5.6388 7.0803 1.4826 36 1 4.6606 7.4798 0.0502 37 1 5.7090 10.7602 1.3543 38 1 5.3649 -0.0062 -0.0025 39 1 4.1417 -2.1382 0.0075 40 1 0.1616 -1.9742 1.6386 41 1 -1.0183 -4.1324 1.5894 42 1 1.2929 -5.4629 -1.5913 43 1 2.5602 -3.3549 -1.6467 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000340403326.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:52:50 Heat of formation + Delta-G solvation = -12.764442 kcal Electronic energy + Delta-G solvation = -27049.839406 eV Core-core repulsion = 23059.685032 eV Total energy + Delta-G solvation = -3990.154374 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 339.137 amu Computer time = 1.54 seconds Orbital eigenvalues (eV) -41.10930 -40.49102 -39.18378 -37.98665 -35.73225 -34.44042 -33.07882 -32.90918 -32.41218 -31.48332 -29.46463 -27.78447 -27.41473 -25.31379 -23.90776 -23.57737 -22.51737 -22.06659 -21.01425 -19.99505 -18.67136 -17.70894 -17.31152 -16.68554 -16.41936 -16.11926 -15.94333 -15.66356 -15.30340 -15.08474 -14.92978 -14.37459 -14.25660 -14.08275 -14.05814 -13.74317 -13.62989 -13.37494 -13.18481 -12.75397 -12.57223 -12.12185 -12.11159 -11.96325 -11.89365 -11.66689 -11.29796 -11.05313 -10.95818 -10.60714 -10.37325 -9.96853 -9.83613 -9.53545 -9.52188 -9.26167 -9.00670 -8.88398 -8.24510 -8.16540 -6.26500 -4.34184 0.40983 0.78228 1.10210 1.18400 1.78224 2.53500 3.20512 3.27015 3.29913 3.30825 3.49677 3.62531 3.94405 4.09326 4.12817 4.27575 4.46283 4.53106 4.61404 4.71458 4.78934 4.94936 4.96902 5.05021 5.10365 5.20723 5.24195 5.34355 5.34642 5.44201 5.54083 5.61193 5.79977 5.84184 5.99824 6.04503 6.15304 6.28717 6.36083 6.68744 6.90811 7.01323 7.12492 7.30193 7.49102 7.61710 7.74708 7.81685 8.29831 8.48641 8.76690 9.32364 10.83480 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.027552 B = 0.001837 C = 0.001745 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1016.028191 B =15234.729144 C =16045.569486 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C -0.043 4.043 3 C -0.122 4.122 4 C 0.166 3.834 5 N -0.652 5.652 6 C 0.509 3.491 7 O -0.501 6.501 8 C 0.491 3.509 9 O -0.535 6.535 10 N -0.669 5.669 11 C 0.246 3.754 12 C -0.548 4.548 13 H 0.067 0.933 14 C 0.066 3.934 15 N -0.885 5.885 16 Si 0.907 3.093 17 H -0.278 1.278 18 H -0.284 1.284 19 H -0.272 1.272 20 C -0.149 4.149 21 C -0.074 4.074 22 C -0.085 4.085 23 C 0.013 3.987 24 C -0.162 4.162 25 C 0.099 3.901 26 N -0.491 5.491 27 C 0.099 3.901 28 C -0.164 4.164 29 H 0.076 0.924 30 H 0.070 0.930 31 H 0.068 0.932 32 H 0.141 0.859 33 H 0.424 0.576 34 H 0.405 0.595 35 H 0.036 0.964 36 H 0.036 0.964 37 H 0.267 0.733 38 H 0.132 0.868 39 H 0.129 0.871 40 H 0.138 0.862 41 H 0.156 0.844 42 H 0.156 0.844 43 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.431 -26.627 -4.016 27.935 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C -0.044 4.044 3 C -0.142 4.142 4 C 0.071 3.929 5 N -0.299 5.299 6 C 0.292 3.708 7 O -0.374 6.374 8 C 0.269 3.731 9 O -0.414 6.414 10 N -0.318 5.318 11 C 0.126 3.874 12 C -0.586 4.586 13 H 0.085 0.915 14 C -0.139 4.139 15 N -0.522 5.522 16 Si 0.734 3.266 17 H -0.204 1.204 18 H -0.209 1.209 19 H -0.196 1.196 20 C -0.169 4.169 21 C -0.093 4.093 22 C -0.086 4.086 23 C 0.004 3.996 24 C -0.181 4.181 25 C -0.058 4.058 26 N -0.200 5.200 27 C -0.058 4.058 28 C -0.184 4.184 29 H 0.094 0.906 30 H 0.089 0.911 31 H 0.087 0.913 32 H 0.158 0.842 33 H 0.263 0.737 34 H 0.239 0.761 35 H 0.054 0.946 36 H 0.054 0.946 37 H 0.077 0.923 38 H 0.150 0.850 39 H 0.147 0.853 40 H 0.155 0.845 41 H 0.173 0.827 42 H 0.173 0.827 43 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges -7.759 -27.102 -4.038 28.479 hybrid contribution 0.255 1.622 0.551 1.732 sum -7.504 -25.480 -3.488 26.790 Atomic orbital electron populations 1.20936 0.90702 1.03082 1.02753 1.19738 0.96118 0.91297 0.97248 1.21016 0.92386 0.98813 1.02031 1.17850 0.91507 0.85044 0.98492 1.43259 1.25438 1.08527 1.52669 1.20956 0.85005 0.85990 0.78836 1.90748 1.24009 1.84829 1.37822 1.19645 0.85766 0.84865 0.82809 1.90741 1.24466 1.84876 1.41300 1.46434 1.28833 1.10011 1.46522 1.19369 0.93475 0.76170 0.98385 1.21193 1.11552 0.93933 1.31906 0.91532 1.24940 0.95076 0.98356 0.95494 1.69967 1.21999 1.19014 1.41186 0.86355 0.80090 0.80223 0.79938 1.20357 1.20927 1.19621 1.20838 1.00214 0.90687 1.05210 1.20889 0.92532 0.97655 0.98242 1.18492 0.92906 0.91039 1.06125 1.19108 0.93843 0.92731 0.93870 1.22344 0.96806 0.99075 0.99901 1.22707 0.98119 0.89129 0.95805 1.67658 1.15252 1.32902 1.04192 1.22696 0.91241 0.95996 0.95828 1.22265 1.01888 0.94326 0.99926 0.90559 0.91071 0.91301 0.84159 0.73718 0.76055 0.94642 0.94635 0.92289 0.84980 0.85304 0.84460 0.82658 0.82703 0.84605 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.99 8.47 36.01 0.31 -0.68 16 2 C -0.04 -0.45 5.88 -104.32 -0.61 -1.06 16 3 C -0.12 -1.50 8.29 -39.43 -0.33 -1.82 16 4 C 0.17 1.98 6.27 -83.73 -0.53 1.46 16 5 N -0.65 -8.44 5.31 -10.28 -0.05 -8.49 16 6 C 0.51 8.18 7.62 -11.63 -0.09 8.09 16 7 O -0.50 -8.62 14.16 5.48 0.08 -8.54 16 8 C 0.49 9.44 7.89 -11.63 -0.09 9.35 16 9 O -0.53 -11.40 16.48 5.49 0.09 -11.31 16 10 N -0.67 -13.96 5.54 -61.95 -0.34 -14.31 16 11 C 0.25 6.23 5.43 -5.19 -0.03 6.20 16 12 C -0.55 -14.48 9.28 -34.44 -0.32 -14.80 16 13 H 0.07 1.67 7.60 -52.48 -0.40 1.27 16 14 C 0.07 1.77 5.46 -17.82 -0.10 1.67 16 15 N -0.88 -25.17 13.29 55.43 0.74 -24.43 16 16 Si 0.91 20.46 29.54 -169.99 -5.02 15.44 16 17 H -0.28 -6.20 7.11 56.52 0.40 -5.80 16 18 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 19 H -0.27 -5.99 7.11 56.52 0.40 -5.59 16 20 C -0.15 -1.43 9.95 -39.43 -0.39 -1.82 16 21 C -0.07 -0.65 9.54 -39.29 -0.37 -1.02 16 22 C -0.08 -0.80 5.52 -104.87 -0.58 -1.38 16 23 C 0.01 0.11 4.73 -104.58 -0.50 -0.39 16 24 C -0.16 -1.26 8.01 -39.10 -0.31 -1.57 16 25 C 0.10 0.77 11.17 -17.61 -0.20 0.57 16 26 N -0.49 -4.51 10.35 -13.35 -0.14 -4.65 16 27 C 0.10 0.75 11.17 -17.61 -0.20 0.55 16 28 C -0.16 -1.21 9.66 -39.10 -0.38 -1.58 16 29 H 0.08 0.57 7.52 -51.93 -0.39 0.18 16 30 H 0.07 0.58 8.08 -51.93 -0.42 0.16 16 31 H 0.07 0.54 6.44 -51.93 -0.33 0.20 16 32 H 0.14 1.89 6.41 -52.49 -0.34 1.55 16 33 H 0.42 4.81 8.29 -40.82 -0.34 4.47 16 34 H 0.40 7.80 7.79 -40.82 -0.32 7.48 16 35 H 0.04 0.98 8.14 -51.93 -0.42 0.55 16 36 H 0.04 0.98 8.14 -51.93 -0.42 0.55 16 37 H 0.27 7.14 8.31 -40.82 -0.34 6.80 16 38 H 0.13 0.99 8.06 -52.49 -0.42 0.57 16 39 H 0.13 0.85 8.06 -52.48 -0.42 0.42 16 40 H 0.14 0.92 6.91 -52.49 -0.36 0.56 16 41 H 0.16 0.83 8.06 -52.49 -0.42 0.41 16 42 H 0.16 0.77 8.06 -52.49 -0.42 0.35 16 43 H 0.14 0.76 8.06 -52.49 -0.42 0.33 16 LS Contribution 374.24 15.07 5.64 5.64 Total: -1.00 -31.65 374.24 -8.72 -40.37 By element: Atomic # 1 Polarization: 13.51 SS G_CDS: -4.99 Total: 8.52 kcal Atomic # 6 Polarization: 6.48 SS G_CDS: -4.71 Total: 1.77 kcal Atomic # 7 Polarization: -52.08 SS G_CDS: 0.20 Total: -51.88 kcal Atomic # 8 Polarization: -20.02 SS G_CDS: 0.17 Total: -19.86 kcal Atomic # 14 Polarization: 20.46 SS G_CDS: -5.02 Total: 15.44 kcal Total LS contribution 5.64 Total: 5.64 kcal Total: -31.65 -8.72 -40.37 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000340403326.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.606 kcal (2) G-P(sol) polarization free energy of solvation -31.653 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.047 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.717 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.370 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.764 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.54 seconds