Wall clock time and date at job start Tue Mar 31 2020 22:52:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50707 * 1 3 3 C 1.37839 * 120.01752 * 2 1 4 4 C 1.39041 * 120.04570 * 180.02562 * 3 2 1 5 5 N 1.39549 * 119.95779 * 179.97438 * 4 3 2 6 6 C 1.34783 * 119.99909 * 33.49830 * 5 4 3 7 7 O 1.21374 * 119.99767 * 5.28414 * 6 5 4 8 8 C 1.49344 * 119.99853 * 185.28116 * 6 5 4 9 9 O 1.21355 * 120.00316 * 359.97438 * 8 6 5 10 10 N 1.34780 * 119.99913 * 180.02562 * 8 6 5 11 11 C 1.46493 * 120.00023 * 179.97438 * 10 8 6 12 12 C 1.50706 * 109.47269 * 179.97438 * 11 10 8 13 13 H 1.08007 * 119.99573 * 0.02562 * 12 11 10 14 14 C 1.37868 * 120.00458 * 180.02562 * 12 11 10 15 15 N 1.31524 * 119.99774 * 359.97438 * 14 12 11 16 16 Si 1.86800 * 120.00436 * 180.02562 * 14 12 11 17 17 H 1.48507 * 109.47118 * 89.99479 * 16 14 12 18 18 H 1.48494 * 109.47358 * 209.99769 * 16 14 12 19 19 H 1.48504 * 109.46882 * 330.00070 * 16 14 12 20 20 C 1.39089 * 120.09054 * 0.02562 * 4 3 2 21 21 C 1.37796 * 120.04129 * 359.71217 * 20 4 3 22 22 C 1.39419 * 120.02835 * 180.02562 * 2 1 3 23 23 C 1.48293 * 120.04281 * 359.97438 * 22 2 1 24 24 C 1.39811 * 120.91086 * 310.27128 * 23 22 2 25 25 C 1.37954 * 119.01576 * 180.24292 * 24 23 22 26 26 N 1.31939 * 120.88519 * 359.47941 * 25 24 23 27 27 C 1.31946 * 122.01338 * 0.27552 * 26 25 24 28 28 C 1.37954 * 120.88301 * 359.97438 * 27 26 25 29 29 H 1.08992 * 109.47366 * 269.97428 * 1 2 3 30 30 H 1.09003 * 109.47072 * 29.98252 * 1 2 3 31 31 H 1.09005 * 109.46249 * 149.97592 * 1 2 3 32 32 H 1.07995 * 119.98010 * 0.02562 * 3 2 1 33 33 H 0.96997 * 120.00663 * 213.50255 * 5 4 3 34 34 H 0.96999 * 119.99642 * 359.97438 * 10 8 6 35 35 H 1.08997 * 109.47445 * 299.99384 * 11 10 8 36 36 H 1.09000 * 109.47354 * 59.99877 * 11 10 8 37 37 H 0.97001 * 119.99694 * 180.02562 * 15 14 12 38 38 H 1.07989 * 119.97627 * 179.97438 * 20 4 3 39 39 H 1.08007 * 120.01849 * 180.27497 * 21 20 4 40 40 H 1.08001 * 120.49379 * 0.02562 * 24 23 22 41 41 H 1.07996 * 119.55327 * 179.75543 * 25 24 23 42 42 H 1.07998 * 119.55612 * 180.02562 * 27 26 25 43 43 H 1.07997 * 120.48783 * 180.02562 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1966 1.1935 0.0000 4 6 3.5870 1.1942 -0.0005 5 7 4.2833 2.4036 -0.0011 6 6 3.7762 3.4734 0.6431 7 8 2.7639 3.3607 1.3031 8 6 4.4600 4.7975 0.5448 9 8 5.4725 4.9101 -0.1147 10 7 3.9532 5.8671 1.1894 11 6 4.6243 7.1658 1.0934 12 6 3.8614 8.1862 1.8984 13 1 2.9664 7.8961 2.4288 14 6 4.3059 9.4899 1.9577 15 7 5.3960 9.8430 1.3122 16 14 3.3606 10.7546 2.9561 17 1 3.8800 10.7758 4.3472 18 1 3.5309 12.0965 2.3436 19 1 1.9195 10.3965 2.9713 20 6 4.2850 -0.0089 -0.0016 21 6 3.5993 -1.2042 0.0038 22 6 2.2048 -1.2071 -0.0005 23 6 1.4649 -2.4922 -0.0005 24 6 0.4349 -2.7280 0.9150 25 6 -0.2241 -3.9396 0.8835 26 7 0.0994 -4.8637 -0.0009 27 6 1.0613 -4.6795 -0.8850 28 6 1.7745 -3.4991 -0.9200 29 1 -0.3633 -0.0005 1.0276 30 1 -0.3633 0.8902 -0.5136 31 1 -0.3632 -0.8899 -0.5143 32 1 1.6566 2.1288 0.0004 33 1 5.1321 2.4744 -0.4651 34 1 3.1442 5.7770 1.7168 35 1 5.6388 7.0803 1.4826 36 1 4.6606 7.4798 0.0502 37 1 5.7090 10.7602 1.3543 38 1 5.3649 -0.0062 -0.0025 39 1 4.1417 -2.1382 0.0075 40 1 0.1616 -1.9742 1.6386 41 1 -1.0183 -4.1324 1.5894 42 1 1.2929 -5.4629 -1.5913 43 1 2.5602 -3.3549 -1.6467 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000340403326.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:52:48 Heat of formation + Delta-G solvation = -33.407776 kcal Electronic energy + Delta-G solvation = -27050.734568 eV Core-core repulsion = 23059.685032 eV Total energy + Delta-G solvation = -3991.049536 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 339.137 amu Computer time = 2.57 seconds Orbital eigenvalues (eV) -42.21431 -41.29030 -40.29015 -39.27023 -36.91075 -36.11817 -34.42800 -33.83819 -33.61438 -32.04505 -30.39304 -29.62470 -28.14323 -26.65432 -25.03108 -24.30008 -23.72142 -23.09101 -21.95755 -21.41269 -20.11959 -18.43478 -18.35132 -18.29312 -17.38697 -17.19885 -17.06901 -16.87778 -16.65424 -16.26084 -15.91816 -15.77056 -15.26632 -15.04404 -14.89044 -14.69317 -14.54683 -14.30398 -14.16296 -14.09195 -13.93692 -13.51159 -13.29759 -13.05389 -12.90735 -12.74430 -12.65291 -12.50466 -12.33156 -12.21815 -11.54638 -11.48413 -10.85903 -10.77016 -10.67832 -10.41645 -10.08540 -10.06466 -9.80935 -9.08752 -8.32655 -6.48829 -0.38227 0.20112 0.23816 0.33907 0.69734 1.22859 1.44227 1.44850 1.56764 2.02999 2.34814 2.62800 2.65673 2.92509 3.02847 3.38422 3.44476 3.63300 3.76878 3.84756 4.02547 4.11113 4.22024 4.24586 4.31463 4.45169 4.64528 4.66223 4.73050 4.79241 4.90673 4.93554 4.95644 5.10814 5.15539 5.17180 5.19961 5.23201 5.26574 5.36036 5.49217 5.56591 5.76021 5.78929 5.84769 5.93591 6.43113 6.55761 6.69356 6.96118 7.06151 7.24176 8.78847 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.027552 B = 0.001837 C = 0.001745 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1016.028191 B =15234.729144 C =16045.569486 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C -0.051 4.051 3 C -0.139 4.139 4 C 0.139 3.861 5 N -0.635 5.635 6 C 0.520 3.480 7 O -0.514 6.514 8 C 0.493 3.507 9 O -0.557 6.557 10 N -0.672 5.672 11 C 0.262 3.738 12 C -0.563 4.563 13 H 0.080 0.920 14 C 0.011 3.989 15 N -0.924 5.924 16 Si 0.982 3.018 17 H -0.271 1.271 18 H -0.281 1.281 19 H -0.260 1.260 20 C -0.140 4.140 21 C -0.071 4.071 22 C -0.078 4.078 23 C -0.001 4.001 24 C -0.163 4.163 25 C 0.091 3.909 26 N -0.515 5.515 27 C 0.092 3.908 28 C -0.161 4.161 29 H 0.085 0.915 30 H 0.068 0.932 31 H 0.075 0.925 32 H 0.121 0.879 33 H 0.432 0.568 34 H 0.413 0.587 35 H 0.006 0.994 36 H 0.006 0.994 37 H 0.271 0.729 38 H 0.155 0.845 39 H 0.157 0.843 40 H 0.145 0.855 41 H 0.175 0.825 42 H 0.178 0.822 43 H 0.155 0.845 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.312 -28.615 -3.562 30.010 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C -0.052 4.052 3 C -0.159 4.159 4 C 0.045 3.955 5 N -0.282 5.282 6 C 0.302 3.698 7 O -0.388 6.388 8 C 0.273 3.727 9 O -0.437 6.437 10 N -0.322 5.322 11 C 0.141 3.859 12 C -0.600 4.600 13 H 0.098 0.902 14 C -0.190 4.190 15 N -0.562 5.562 16 Si 0.805 3.195 17 H -0.196 1.196 18 H -0.207 1.207 19 H -0.184 1.184 20 C -0.160 4.160 21 C -0.090 4.090 22 C -0.079 4.079 23 C -0.009 4.009 24 C -0.183 4.183 25 C -0.064 4.064 26 N -0.225 5.225 27 C -0.064 4.064 28 C -0.181 4.181 29 H 0.103 0.897 30 H 0.087 0.913 31 H 0.094 0.906 32 H 0.139 0.861 33 H 0.272 0.728 34 H 0.250 0.750 35 H 0.024 0.976 36 H 0.024 0.976 37 H 0.080 0.920 38 H 0.173 0.827 39 H 0.174 0.826 40 H 0.163 0.837 41 H 0.192 0.808 42 H 0.195 0.805 43 H 0.172 0.828 Dipole moment (debyes) X Y Z Total from point charges -8.648 -29.155 -3.598 30.623 hybrid contribution 0.538 2.046 0.334 2.142 sum -8.110 -27.108 -3.264 28.483 Atomic orbital electron populations 1.20945 0.89644 1.03255 1.03369 1.19909 0.97035 0.91070 0.97181 1.20980 0.92745 0.98838 1.03341 1.18046 0.91585 0.85014 1.00860 1.43061 1.25429 1.08152 1.51511 1.20102 0.84707 0.85320 0.79633 1.90752 1.24432 1.84797 1.38855 1.20172 0.85251 0.85809 0.81425 1.90721 1.25494 1.85569 1.41875 1.46156 1.29187 1.09239 1.47576 1.18851 0.92531 0.78249 0.96314 1.21563 1.12016 0.94451 1.31993 0.90222 1.25953 0.95918 1.00632 0.96476 1.70100 1.23727 1.19707 1.42698 0.85191 0.79002 0.77082 0.78188 1.19608 1.20657 1.18378 1.21089 1.01387 0.89836 1.03696 1.21225 0.92392 0.98400 0.96977 1.18680 0.93421 0.91101 1.04668 1.19164 0.94377 0.92606 0.94804 1.22453 0.96568 0.99307 0.99968 1.23037 0.98547 0.88925 0.95938 1.67689 1.16132 1.33693 1.04985 1.23109 0.90739 0.96725 0.95826 1.22458 1.02063 0.93769 0.99768 0.89695 0.91322 0.90648 0.86081 0.72848 0.75032 0.97574 0.97597 0.92042 0.82711 0.82566 0.83730 0.80835 0.80498 0.82750 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.83 8.47 71.24 0.60 -1.22 16 2 C -0.05 -1.00 5.88 -19.67 -0.12 -1.12 16 3 C -0.14 -3.35 8.29 22.37 0.19 -3.17 16 4 C 0.14 3.17 6.27 38.31 0.24 3.41 16 5 N -0.63 -16.14 5.31 -304.77 -1.62 -17.76 16 6 C 0.52 16.84 7.62 87.24 0.66 17.50 16 7 O -0.51 -17.79 14.16 -3.32 -0.05 -17.84 16 8 C 0.49 19.46 7.89 87.24 0.69 20.14 16 9 O -0.56 -24.41 16.48 -3.26 -0.05 -24.47 16 10 N -0.67 -28.86 5.54 -468.26 -2.59 -31.45 16 11 C 0.26 13.83 5.43 85.64 0.46 14.30 16 12 C -0.56 -30.15 9.28 25.60 0.24 -29.91 16 13 H 0.08 3.96 7.60 -2.91 -0.02 3.94 16 14 C 0.01 0.58 5.46 84.65 0.46 1.04 16 15 N -0.92 -53.73 13.29 21.45 0.28 -53.44 16 16 Si 0.98 41.78 29.54 68.60 2.03 43.81 16 17 H -0.27 -11.17 7.11 99.48 0.71 -10.46 16 18 H -0.28 -11.76 7.11 99.48 0.71 -11.06 16 19 H -0.26 -10.49 7.11 99.48 0.71 -9.78 16 20 C -0.14 -2.35 9.95 22.37 0.22 -2.13 16 21 C -0.07 -1.04 9.54 22.46 0.21 -0.82 16 22 C -0.08 -1.30 5.52 -20.02 -0.11 -1.41 16 23 C 0.00 -0.02 4.73 -19.84 -0.09 -0.11 16 24 C -0.16 -2.23 8.01 22.58 0.18 -2.05 16 25 C 0.09 1.26 11.17 84.61 0.95 2.21 16 26 N -0.52 -8.53 10.35 -196.14 -2.03 -10.56 16 27 C 0.09 1.18 11.17 84.61 0.95 2.12 16 28 C -0.16 -1.93 9.66 22.58 0.22 -1.71 16 29 H 0.08 1.17 7.52 -2.39 -0.02 1.16 16 30 H 0.07 1.10 8.08 -2.39 -0.02 1.08 16 31 H 0.07 1.08 6.44 -2.38 -0.02 1.06 16 32 H 0.12 3.35 6.41 -2.91 -0.02 3.34 16 33 H 0.43 9.51 8.29 -92.71 -0.77 8.74 16 34 H 0.41 16.21 7.79 -92.71 -0.72 15.49 16 35 H 0.01 0.37 8.14 -2.39 -0.02 0.35 16 36 H 0.01 0.35 8.14 -2.39 -0.02 0.33 16 37 H 0.27 14.69 8.31 -92.71 -0.77 13.92 16 38 H 0.16 1.84 8.06 -2.92 -0.02 1.82 16 39 H 0.16 1.42 8.06 -2.91 -0.02 1.40 16 40 H 0.14 1.68 6.91 -2.91 -0.02 1.66 16 41 H 0.17 1.55 8.06 -2.91 -0.02 1.52 16 42 H 0.18 1.29 8.06 -2.91 -0.02 1.26 16 43 H 0.15 1.20 8.06 -2.91 -0.02 1.18 16 Total: -1.00 -69.19 374.24 1.51 -67.68 By element: Atomic # 1 Polarization: 27.36 SS G_CDS: -0.41 Total: 26.95 kcal Atomic # 6 Polarization: 11.13 SS G_CDS: 5.95 Total: 17.08 kcal Atomic # 7 Polarization: -107.25 SS G_CDS: -5.96 Total: -113.21 kcal Atomic # 8 Polarization: -42.20 SS G_CDS: -0.10 Total: -42.30 kcal Atomic # 14 Polarization: 41.78 SS G_CDS: 2.03 Total: 43.81 kcal Total: -69.19 1.51 -67.68 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000340403326.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.271 kcal (2) G-P(sol) polarization free energy of solvation -69.186 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.916 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.508 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.678 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.408 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.57 seconds