Wall clock time and date at job start Tue Mar 31 2020 22:51:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 O 1.34451 * 124.92127 * 2 1 4 4 C 1.34803 * 110.89134 * 180.02562 * 3 2 1 5 5 C 1.38936 * 133.49767 * 179.97438 * 4 3 2 6 6 C 1.37850 * 119.82128 * 179.97438 * 5 4 3 7 7 C 1.38745 * 120.68041 * 359.97438 * 6 5 4 8 8 C 1.36735 * 120.42334 * 0.02572 * 7 6 5 9 9 C 1.39408 * 119.71307 * 359.67356 * 8 7 6 10 10 C 1.33989 * 124.92419 * 180.02562 * 2 1 3 11 11 C 1.50702 * 126.90874 * 359.96398 * 10 2 1 12 12 C 1.50704 * 109.47115 * 90.01801 * 11 10 2 13 13 O 1.21297 * 119.99886 * 0.02562 * 12 11 10 14 14 N 1.34779 * 120.00092 * 180.02562 * 12 11 10 15 15 C 1.40151 * 120.00099 * 180.02562 * 14 12 11 16 16 C 1.40416 * 125.97476 * 0.02562 * 15 14 12 17 17 C 1.35237 * 107.86796 * 179.97438 * 16 15 14 18 18 N 1.34970 * 107.85941 * 0.26441 * 17 16 15 19 19 C 1.46504 * 125.96940 * 179.73198 * 18 17 16 20 20 C 1.50699 * 109.46610 * 125.00265 * 19 18 17 21 21 H 1.08001 * 120.00250 * 359.97438 * 20 19 18 22 22 C 1.37878 * 120.00163 * 179.97438 * 20 19 18 23 23 N 1.31523 * 119.99479 * 359.97438 * 22 20 19 24 24 Si 1.86797 * 120.00617 * 179.97438 * 22 20 19 25 25 H 1.48502 * 109.46913 * 59.99694 * 24 22 20 26 26 H 1.48497 * 109.47477 * 179.97438 * 24 22 20 27 27 H 1.48507 * 109.46927 * 300.00226 * 24 22 20 28 28 N 1.31213 * 125.97528 * 180.02562 * 15 14 12 29 29 H 1.09001 * 109.47164 * 269.97769 * 1 2 3 30 30 H 1.09000 * 109.46836 * 29.97840 * 1 2 3 31 31 H 1.08998 * 109.46915 * 149.97744 * 1 2 3 32 32 H 1.08006 * 120.08992 * 359.97384 * 5 4 3 33 33 H 1.07996 * 119.66188 * 179.97438 * 6 5 4 34 34 H 1.08000 * 119.78649 * 180.02562 * 7 6 5 35 35 H 1.07996 * 120.14555 * 180.02562 * 8 7 6 36 36 H 1.08999 * 109.46960 * 330.01957 * 11 10 2 37 37 H 1.08996 * 109.47368 * 210.02061 * 11 10 2 38 38 H 0.96994 * 119.99525 * 0.02562 * 14 12 11 39 39 H 1.08000 * 126.06023 * 359.97438 * 16 15 14 40 40 H 1.08002 * 126.06518 * 179.97438 * 17 16 15 41 41 H 1.08998 * 109.46990 * 244.99353 * 19 18 17 42 42 H 1.08992 * 109.47218 * 5.00271 * 19 18 17 43 43 H 0.97001 * 119.99807 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.2767 1.1024 0.0000 4 6 3.5845 0.7756 -0.0006 5 6 4.7566 1.5216 -0.0013 6 6 5.9771 0.8806 -0.0012 7 6 6.0491 -0.5049 0.0001 8 6 4.9075 -1.2576 0.0008 9 6 3.6642 -0.6271 0.0071 10 6 2.2741 -1.0986 -0.0005 11 6 1.8042 -2.5305 -0.0004 12 6 1.6473 -3.0078 -1.4212 13 8 1.8933 -2.2590 -2.3432 14 7 1.2336 -4.2667 -1.6674 15 6 1.0882 -4.7107 -2.9887 16 6 1.3377 -3.9545 -4.1452 17 6 1.0809 -4.7384 -5.2170 18 7 0.6782 -5.9434 -4.7615 19 6 0.2936 -7.0908 -5.5872 20 6 1.1202 -8.2892 -5.1980 21 1 1.8585 -8.2045 -4.4143 22 6 0.9341 -9.4938 -5.8424 23 7 0.0346 -9.5970 -6.7965 24 14 1.9591 -10.9792 -5.3605 25 1 1.7259 -11.2982 -3.9291 26 1 1.5684 -12.1426 -6.1965 27 1 3.3978 -10.6776 -5.5723 28 7 0.6950 -5.9058 -3.3614 29 1 -0.3633 -0.0004 1.0277 30 1 -0.3633 0.8902 -0.5135 31 1 -0.3633 -0.8898 -0.5142 32 1 4.7117 2.6007 -0.0019 33 1 6.8866 1.4630 -0.0021 34 1 7.0130 -0.9921 0.0006 35 1 4.9688 -2.3358 0.0022 36 1 0.8454 -2.5982 0.5136 37 1 2.5366 -3.1532 0.5133 38 1 1.0365 -4.8653 -0.9301 39 1 1.6750 -2.9289 -4.1737 40 1 1.1763 -4.4496 -6.2533 41 1 -0.7624 -7.3121 -5.4324 42 1 0.4656 -6.8564 -6.6377 43 1 -0.0966 -10.4446 -7.2496 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000341492522.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:51:53 Heat of formation + Delta-G solvation = 73.630799 kcal Electronic energy + Delta-G solvation = -27649.048035 eV Core-core repulsion = 23662.640040 eV Total energy + Delta-G solvation = -3986.407995 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 339.137 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -42.69771 -40.66221 -39.23101 -38.08098 -34.87407 -34.41090 -33.35643 -31.45220 -31.17631 -30.71558 -29.45180 -29.20601 -26.93122 -26.33430 -23.25443 -23.12766 -22.05598 -21.75200 -20.57176 -19.85788 -19.47510 -17.35830 -17.16050 -16.99679 -16.59720 -16.50675 -16.19141 -15.62978 -15.39270 -15.23555 -14.40544 -14.22771 -14.08533 -13.89669 -13.81873 -13.45221 -13.38592 -13.14196 -12.78922 -12.49250 -12.38248 -12.35638 -12.30573 -12.19827 -11.82444 -11.69781 -11.08037 -11.05198 -10.87112 -10.44996 -10.26858 -10.17106 -9.97498 -9.56152 -9.51118 -8.79034 -8.64044 -8.22671 -8.13969 -7.47803 -6.25366 -4.30574 0.72190 1.18349 2.01400 2.32846 2.49617 2.85783 2.93546 3.24589 3.27936 3.32363 3.53885 3.71029 3.91772 4.15888 4.31176 4.32340 4.57948 4.69585 4.75657 4.85976 4.94030 5.08217 5.09693 5.13592 5.15866 5.21519 5.31980 5.40893 5.50594 5.56276 5.73143 5.80251 6.04126 6.07309 6.21476 6.26419 6.28062 6.47560 6.48832 6.61451 6.85258 6.99877 7.04045 7.40504 7.57154 7.69947 7.87982 8.03456 8.26720 8.62517 8.78777 9.34987 10.83329 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.018564 B = 0.002199 C = 0.002082 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1507.963837 B =12731.648193 C =13442.900501 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.082 4.082 2 C 0.052 3.948 3 O -0.191 6.191 4 C 0.051 3.949 5 C -0.107 4.107 6 C -0.098 4.098 7 C -0.135 4.135 8 C -0.069 4.069 9 C -0.109 4.109 10 C -0.160 4.160 11 C -0.063 4.063 12 C 0.516 3.484 13 O -0.506 6.506 14 N -0.633 5.633 15 C 0.257 3.743 16 C -0.287 4.287 17 C 0.051 3.949 18 N -0.319 5.319 19 C 0.259 3.741 20 C -0.529 4.529 21 H 0.068 0.932 22 C 0.062 3.938 23 N -0.895 5.895 24 Si 0.908 3.092 25 H -0.274 1.274 26 H -0.285 1.285 27 H -0.275 1.275 28 N -0.305 5.305 29 H 0.087 0.913 30 H 0.082 0.918 31 H 0.092 0.908 32 H 0.130 0.870 33 H 0.133 0.867 34 H 0.128 0.872 35 H 0.125 0.875 36 H 0.108 0.892 37 H 0.108 0.892 38 H 0.411 0.589 39 H 0.159 0.841 40 H 0.167 0.833 41 H 0.045 0.955 42 H 0.057 0.943 43 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.439 20.420 16.496 26.808 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C 0.005 3.995 3 O -0.093 6.093 4 C 0.004 3.996 5 C -0.126 4.126 6 C -0.116 4.116 7 C -0.153 4.153 8 C -0.088 4.088 9 C -0.110 4.110 10 C -0.162 4.162 11 C -0.103 4.103 12 C 0.301 3.699 13 O -0.379 6.379 14 N -0.281 5.281 15 C 0.004 3.996 16 C -0.319 4.319 17 C -0.099 4.099 18 N -0.101 5.101 19 C 0.141 3.859 20 C -0.567 4.567 21 H 0.086 0.914 22 C -0.141 4.141 23 N -0.534 5.534 24 Si 0.735 3.265 25 H -0.199 1.199 26 H -0.210 1.210 27 H -0.200 1.200 28 N -0.136 5.136 29 H 0.105 0.895 30 H 0.101 0.899 31 H 0.111 0.889 32 H 0.148 0.852 33 H 0.151 0.849 34 H 0.146 0.854 35 H 0.143 0.857 36 H 0.126 0.874 37 H 0.126 0.874 38 H 0.246 0.754 39 H 0.176 0.824 40 H 0.185 0.815 41 H 0.063 0.937 42 H 0.074 0.926 43 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 5.017 19.859 16.004 25.994 hybrid contribution 0.752 -0.618 0.107 0.979 sum 5.768 19.241 16.111 25.749 Atomic orbital electron populations 1.20476 0.84714 1.04915 1.03737 1.22044 0.93764 0.83216 1.00502 1.83936 1.15064 1.33767 1.76555 1.19526 0.83181 0.93420 1.03474 1.19912 0.88116 0.99644 1.04883 1.20898 0.96429 0.94658 0.99631 1.20770 0.98369 0.93883 1.02299 1.20290 0.90223 1.00098 0.98141 1.19695 0.93532 0.92932 1.04828 1.19996 0.90965 0.94108 1.11155 1.19918 1.03974 0.92377 0.94012 1.20565 0.77005 0.80728 0.91568 1.90672 1.47459 1.54208 1.45517 1.42501 1.66570 1.13763 1.05240 1.19116 1.02497 0.92964 0.85050 1.21518 1.18155 1.03016 0.89168 1.22564 1.00740 0.86652 0.99958 1.49087 1.47371 1.11125 1.02513 1.19741 0.97285 0.80541 0.88319 1.21213 1.21097 0.93815 1.20622 0.91375 1.24949 0.95498 0.98965 0.94669 1.69912 1.33232 1.26615 1.23593 0.86381 0.80313 0.81091 0.78677 1.19934 1.21026 1.20040 1.77324 1.27128 1.16663 0.92451 0.89473 0.89899 0.88948 0.85202 0.84898 0.85387 0.85685 0.87406 0.87432 0.75433 0.82391 0.81538 0.93711 0.92557 0.92259 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.61 10.00 36.01 0.36 -0.25 16 2 C 0.05 0.58 7.23 -35.80 -0.26 0.32 16 3 O -0.19 -2.39 10.58 3.92 0.04 -2.35 16 4 C 0.05 0.63 7.42 -38.47 -0.29 0.34 16 5 C -0.11 -1.06 10.07 -39.46 -0.40 -1.46 16 6 C -0.10 -0.84 10.01 -39.54 -0.40 -1.24 16 7 C -0.14 -1.25 9.98 -39.94 -0.40 -1.65 16 8 C -0.07 -0.76 10.05 -39.69 -0.40 -1.16 16 9 C -0.11 -1.36 6.38 -105.15 -0.67 -2.03 16 10 C -0.16 -1.85 4.84 -102.66 -0.50 -2.35 16 11 C -0.06 -0.59 5.79 -29.03 -0.17 -0.75 16 12 C 0.52 7.10 7.79 -10.98 -0.09 7.01 16 13 O -0.51 -8.89 13.17 5.54 0.07 -8.81 16 14 N -0.63 -9.31 5.45 -11.13 -0.06 -9.37 16 15 C 0.26 5.08 8.11 -154.40 -1.25 3.83 16 16 C -0.29 -5.72 9.61 -39.83 -0.38 -6.10 16 17 C 0.05 1.02 11.44 -17.24 -0.20 0.83 16 18 N -0.32 -7.42 3.67 -62.56 -0.23 -7.65 16 19 C 0.26 6.56 6.26 -5.19 -0.03 6.53 16 20 C -0.53 -14.69 9.23 -34.44 -0.32 -15.01 16 21 H 0.07 1.95 7.81 -52.49 -0.41 1.54 16 22 C 0.06 1.70 5.46 -17.82 -0.10 1.61 16 23 N -0.90 -25.27 13.29 55.43 0.74 -24.53 16 24 Si 0.91 21.29 29.54 -169.99 -5.02 16.27 16 25 H -0.27 -6.39 7.11 56.52 0.40 -5.99 16 26 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 27 H -0.27 -6.38 7.11 56.52 0.40 -5.98 16 28 N -0.30 -6.94 12.42 31.44 0.39 -6.55 16 29 H 0.09 0.44 8.14 -51.93 -0.42 0.02 16 30 H 0.08 0.57 8.14 -51.93 -0.42 0.15 16 31 H 0.09 0.69 7.68 -51.93 -0.40 0.29 16 32 H 0.13 0.99 8.06 -52.48 -0.42 0.56 16 33 H 0.13 0.75 8.06 -52.49 -0.42 0.32 16 34 H 0.13 0.88 8.06 -52.49 -0.42 0.46 16 35 H 0.13 1.21 8.06 -52.49 -0.42 0.78 16 36 H 0.11 0.67 7.72 -51.93 -0.40 0.27 16 37 H 0.11 0.79 8.14 -51.93 -0.42 0.37 16 38 H 0.41 4.72 8.82 -40.82 -0.36 4.36 16 39 H 0.16 3.11 5.91 -52.49 -0.31 2.80 16 40 H 0.17 2.75 8.06 -52.49 -0.42 2.33 16 41 H 0.05 1.20 8.14 -51.93 -0.42 0.77 16 42 H 0.06 1.40 8.07 -51.93 -0.42 0.99 16 43 H 0.27 7.15 8.31 -40.82 -0.34 6.81 16 LS Contribution 376.28 15.07 5.67 5.67 Total: -1.00 -35.02 376.28 -9.12 -44.13 By element: Atomic # 1 Polarization: 9.97 SS G_CDS: -5.24 Total: 4.73 kcal Atomic # 6 Polarization: -6.06 SS G_CDS: -5.48 Total: -11.53 kcal Atomic # 7 Polarization: -48.94 SS G_CDS: 0.84 Total: -48.10 kcal Atomic # 8 Polarization: -11.28 SS G_CDS: 0.11 Total: -11.16 kcal Atomic # 14 Polarization: 21.29 SS G_CDS: -5.02 Total: 16.27 kcal Total LS contribution 5.67 Total: 5.67 kcal Total: -35.02 -9.12 -44.13 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000341492522.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 117.763 kcal (2) G-P(sol) polarization free energy of solvation -35.017 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 82.746 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.115 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.132 kcal (6) G-S(sol) free energy of system = (1) + (5) 73.631 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds