Wall clock time and date at job start Tue Mar 31 2020 22:13:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31412 * 1 3 3 Si 1.86804 * 119.99442 * 2 1 4 4 H 1.48498 * 109.47256 * 180.02562 * 3 2 1 5 5 H 1.48500 * 109.47120 * 300.00063 * 3 2 1 6 6 H 1.48500 * 109.47352 * 60.00023 * 3 2 1 7 7 C 1.38941 * 120.00651 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00425 * 180.02562 * 7 2 1 9 9 N 1.37106 * 119.99929 * 359.97438 * 7 2 1 10 10 C 1.34769 * 120.00013 * 180.02562 * 9 7 2 11 11 O 1.21297 * 120.00056 * 359.97438 * 10 9 7 12 12 C 1.50699 * 120.00076 * 180.02562 * 10 9 7 13 13 N 1.46501 * 109.47236 * 179.97438 * 12 10 9 14 14 C 1.34781 * 119.99976 * 179.97438 * 13 12 10 15 15 O 1.21602 * 119.99834 * 359.97438 * 14 13 12 16 16 C 1.47437 * 120.00068 * 180.02562 * 14 13 12 17 17 C 1.39722 * 120.20678 * 6.35999 * 16 14 13 18 18 C 1.37759 * 119.92695 * 180.02562 * 17 16 14 19 19 C 1.38617 * 120.35279 * 359.97438 * 18 17 16 20 20 C 1.37953 * 120.42419 * 359.74143 * 19 18 17 21 21 C 1.38970 * 120.06238 * 0.51662 * 20 19 18 22 22 N 1.38926 * 120.17829 * 179.76696 * 21 20 19 23 23 C 1.39731 * 119.99936 * 257.28240 * 22 21 20 24 24 C 1.38928 * 120.07541 * 175.76356 * 23 22 21 25 25 C 1.38098 * 119.92478 * 180.25456 * 24 23 22 26 26 C 1.38296 * 120.07402 * 359.42117 * 25 24 23 27 27 C 1.38290 * 120.14781 * 0.60146 * 26 25 24 28 28 C 1.38101 * 120.07816 * 359.67709 * 27 26 25 29 29 H 0.96999 * 120.00410 * 359.97438 * 1 2 3 30 30 H 0.97003 * 119.99567 * 0.02562 * 9 7 2 31 31 H 1.08993 * 109.47330 * 59.99310 * 12 10 9 32 32 H 1.09000 * 109.46660 * 299.99812 * 12 10 9 33 33 H 0.96991 * 120.00129 * 359.97438 * 13 12 10 34 34 H 1.07998 * 120.03703 * 0.02562 * 17 16 14 35 35 H 1.08001 * 119.82151 * 179.97438 * 18 17 16 36 36 H 1.07996 * 119.78418 * 180.02562 * 19 18 17 37 37 H 1.08001 * 119.97142 * 180.27899 * 20 19 18 38 38 H 0.96998 * 120.00236 * 77.27846 * 22 21 20 39 39 H 1.07997 * 120.03352 * 359.97438 * 24 23 22 40 40 H 1.07999 * 119.96185 * 179.71759 * 25 24 23 41 41 H 1.07998 * 119.92782 * 180.28068 * 26 25 24 42 42 H 1.08001 * 119.96111 * 179.69804 * 27 26 25 43 43 H 1.08007 * 120.03755 * 179.97438 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2480 1.6179 0.0000 4 1 3.7080 1.3467 -0.0006 5 1 1.8891 2.3965 -1.2125 6 1 1.8892 2.3966 1.2125 7 6 2.0090 -1.2032 0.0005 8 1 3.0889 -1.2031 0.0010 9 7 1.3235 -2.3906 0.0016 10 6 1.9975 -3.5577 0.0026 11 8 3.2105 -3.5576 0.0022 12 6 1.2442 -4.8629 0.0032 13 7 2.1963 -5.9763 0.0037 14 6 1.7471 -7.2471 0.0048 15 8 0.5516 -7.4693 0.0059 16 6 2.7053 -8.3676 0.0059 17 6 4.0742 -8.1219 0.1395 18 6 4.9644 -9.1732 0.1393 19 6 4.5098 -10.4760 0.0075 20 6 3.1609 -10.7357 -0.1195 21 6 2.2479 -9.6880 -0.1268 22 7 0.8894 -9.9464 -0.2595 23 6 0.2548 -9.7366 -1.4866 24 6 -1.0826 -10.0772 -1.6460 25 6 -1.7052 -9.8734 -2.8617 26 6 -1.0022 -9.3199 -3.9162 27 6 0.3293 -8.9802 -3.7611 28 6 0.9597 -9.1866 -2.5498 29 1 -0.4851 0.8400 0.0004 30 1 0.3535 -2.3907 0.0016 31 1 0.6178 -4.9213 -0.8868 32 1 0.6172 -4.9200 0.8930 33 1 3.1498 -5.7990 0.0033 34 1 4.4340 -7.1089 0.2429 35 1 6.0223 -8.9812 0.2423 36 1 5.2157 -11.2933 0.0089 37 1 2.8143 -11.7539 -0.2172 38 1 0.3813 -10.2726 0.4997 39 1 -1.6334 -10.5050 -0.8215 40 1 -2.7436 -10.1422 -2.9877 41 1 -1.4927 -9.1574 -4.8646 42 1 0.8768 -8.5526 -4.5881 43 1 1.9998 -8.9214 -2.4295 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000343521634.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:13:57 Heat of formation + Delta-G solvation = -4.246061 kcal Electronic energy + Delta-G solvation = -28202.443569 eV Core-core repulsion = 24212.658580 eV Total energy + Delta-G solvation = -3989.784989 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 339.137 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -40.68920 -39.10234 -38.52030 -37.82070 -35.55114 -34.38883 -33.65360 -31.61842 -31.30247 -30.96172 -30.45120 -28.24585 -27.48929 -24.74809 -23.56457 -23.09732 -22.34581 -21.23962 -20.25858 -19.61563 -18.33789 -17.84890 -17.58533 -17.10140 -16.07448 -15.88068 -15.64124 -15.25272 -15.15356 -14.76855 -14.66558 -14.37139 -14.13467 -13.90698 -13.85332 -13.74536 -13.27166 -13.21486 -12.95875 -12.58186 -12.24663 -12.17110 -11.89093 -11.71236 -11.64146 -11.37386 -11.15275 -10.92146 -10.51220 -10.41917 -10.33396 -9.66083 -9.57754 -9.24635 -9.02717 -8.81583 -8.74380 -8.65090 -8.11491 -7.43347 -6.52626 -3.94787 0.65041 1.02620 1.55088 1.74372 2.91480 3.09349 3.21117 3.26317 3.31312 3.35689 3.68976 3.75671 4.02306 4.10258 4.61611 4.66637 4.78751 4.86466 4.96898 5.06607 5.14092 5.15991 5.19236 5.24574 5.29018 5.55603 5.60853 5.68110 5.85604 5.89622 5.95751 5.98972 6.05659 6.09806 6.14513 6.18655 6.37904 6.51155 6.58055 6.66652 6.72741 6.95564 7.45026 7.47518 7.65687 7.80391 7.90893 8.41863 8.46348 9.03294 9.37904 9.85490 10.64281 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.012495 B = 0.002796 C = 0.002412 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2240.271246 B =10010.186990 C =11604.797498 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.026 3.974 3 Si 0.932 3.068 4 H -0.267 1.267 5 H -0.280 1.280 6 H -0.280 1.280 7 C -0.305 4.305 8 H 0.106 0.894 9 N -0.548 5.548 10 C 0.428 3.572 11 O -0.598 6.598 12 C 0.112 3.888 13 N -0.704 5.704 14 C 0.551 3.449 15 O -0.524 6.524 16 C -0.136 4.136 17 C -0.078 4.078 18 C -0.127 4.127 19 C -0.089 4.089 20 C -0.133 4.133 21 C 0.202 3.798 22 N -0.689 5.689 23 C 0.242 3.758 24 C -0.187 4.187 25 C -0.077 4.077 26 C -0.180 4.180 27 C -0.075 4.075 28 C -0.186 4.186 29 H 0.274 0.726 30 H 0.396 0.604 31 H 0.084 0.916 32 H 0.083 0.917 33 H 0.408 0.592 34 H 0.135 0.865 35 H 0.131 0.869 36 H 0.129 0.871 37 H 0.131 0.869 38 H 0.409 0.591 39 H 0.117 0.883 40 H 0.118 0.882 41 H 0.115 0.885 42 H 0.117 0.883 43 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.816 -22.642 -2.098 22.912 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.534 5.534 2 C -0.177 4.177 3 Si 0.759 3.241 4 H -0.191 1.191 5 H -0.206 1.206 6 H -0.206 1.206 7 C -0.434 4.434 8 H 0.124 0.876 9 N -0.183 5.183 10 C 0.214 3.786 11 O -0.485 6.485 12 C -0.016 4.016 13 N -0.359 5.359 14 C 0.337 3.663 15 O -0.402 6.402 16 C -0.142 4.142 17 C -0.098 4.098 18 C -0.145 4.145 19 C -0.108 4.108 20 C -0.153 4.153 21 C 0.107 3.893 22 N -0.316 5.316 23 C 0.141 3.859 24 C -0.209 4.209 25 C -0.096 4.096 26 C -0.199 4.199 27 C -0.094 4.094 28 C -0.208 4.208 29 H 0.084 0.916 30 H 0.230 0.770 31 H 0.102 0.898 32 H 0.101 0.899 33 H 0.247 0.753 34 H 0.152 0.848 35 H 0.149 0.851 36 H 0.147 0.853 37 H 0.148 0.852 38 H 0.246 0.754 39 H 0.135 0.865 40 H 0.136 0.864 41 H 0.133 0.867 42 H 0.135 0.865 43 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges 2.749 -22.535 -2.114 22.801 hybrid contribution 0.064 1.069 0.387 1.138 sum 2.813 -21.467 -1.728 21.719 Atomic orbital electron populations 1.69622 1.06022 1.28447 1.49316 1.25329 0.95664 0.99949 0.96774 0.85760 0.79683 0.80814 0.77844 1.19119 1.20589 1.20603 1.19780 0.93487 0.81973 1.48185 0.87611 1.41801 1.09495 1.04480 1.62515 1.19733 0.88282 0.84994 0.85611 1.90487 1.13708 1.86847 1.57480 1.20930 0.91789 0.85632 1.03241 1.45628 1.11517 1.04541 1.74174 1.17985 0.88231 0.82461 0.77598 1.90797 1.15629 1.84609 1.49131 1.20522 0.94005 0.93972 1.05651 1.21443 0.91680 1.00224 0.96406 1.21163 1.00143 0.92361 1.00799 1.21220 0.95141 0.97051 0.97411 1.21429 0.92894 0.99012 1.01954 1.17333 0.84531 0.90647 0.96766 1.41435 1.05618 1.73561 1.10951 1.17556 0.91380 0.92246 0.84687 1.20476 0.93239 1.08500 0.98657 1.20810 0.99023 0.97229 0.92508 1.20861 0.94920 1.04865 0.99289 1.20856 0.94736 0.97353 0.96452 1.20611 1.00307 1.06309 0.93549 0.91618 0.77029 0.89806 0.89878 0.75292 0.84764 0.85087 0.85295 0.85151 0.75367 0.86511 0.86428 0.86713 0.86507 0.86910 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -23.93 13.05 55.50 0.72 -23.21 16 2 C 0.03 0.67 5.50 -17.47 -0.10 0.58 16 3 Si 0.93 20.52 29.55 -169.99 -5.02 15.50 16 4 H -0.27 -5.85 7.11 56.52 0.40 -5.45 16 5 H -0.28 -6.08 7.11 56.52 0.40 -5.68 16 6 H -0.28 -6.08 7.11 56.52 0.40 -5.68 16 7 C -0.30 -8.29 9.68 -14.93 -0.14 -8.44 16 8 H 0.11 3.00 7.16 -52.49 -0.38 2.62 16 9 N -0.55 -13.66 5.29 -10.97 -0.06 -13.72 16 10 C 0.43 9.88 7.85 -10.99 -0.09 9.79 16 11 O -0.60 -15.26 15.24 5.54 0.08 -15.17 16 12 C 0.11 2.11 6.15 -5.19 -0.03 2.07 16 13 N -0.70 -12.05 5.48 -62.56 -0.34 -12.40 16 14 C 0.55 9.05 7.30 -12.51 -0.09 8.96 16 15 O -0.52 -9.73 13.71 5.28 0.07 -9.66 16 16 C -0.14 -1.82 5.03 -104.80 -0.53 -2.34 16 17 C -0.08 -0.87 9.52 -39.20 -0.37 -1.25 16 18 C -0.13 -1.11 10.02 -39.62 -0.40 -1.50 16 19 C -0.09 -0.71 10.03 -39.55 -0.40 -1.11 16 20 C -0.13 -1.23 9.96 -39.41 -0.39 -1.62 16 21 C 0.20 2.40 4.73 -83.58 -0.40 2.00 16 22 N -0.69 -8.34 4.03 -8.24 -0.03 -8.37 16 23 C 0.24 3.27 5.02 -83.75 -0.42 2.85 16 24 C -0.19 -2.34 9.90 -39.38 -0.39 -2.73 16 25 C -0.08 -0.91 10.04 -39.61 -0.40 -1.31 16 26 C -0.18 -2.19 10.04 -39.54 -0.40 -2.59 16 27 C -0.08 -0.98 10.04 -39.61 -0.40 -1.38 16 28 C -0.19 -2.62 8.65 -39.38 -0.34 -2.96 16 29 H 0.27 6.90 8.31 -40.82 -0.34 6.56 16 30 H 0.40 9.53 7.90 -40.82 -0.32 9.21 16 31 H 0.08 1.55 8.14 -51.93 -0.42 1.13 16 32 H 0.08 1.51 8.14 -51.93 -0.42 1.09 16 33 H 0.41 6.81 5.51 -40.82 -0.22 6.58 16 34 H 0.13 1.45 6.45 -52.49 -0.34 1.11 16 35 H 0.13 0.84 8.06 -52.49 -0.42 0.42 16 36 H 0.13 0.67 8.06 -52.49 -0.42 0.25 16 37 H 0.13 0.98 8.06 -52.49 -0.42 0.56 16 38 H 0.41 4.33 8.84 -40.82 -0.36 3.97 16 39 H 0.12 1.24 8.06 -52.49 -0.42 0.81 16 40 H 0.12 1.11 8.06 -52.49 -0.42 0.68 16 41 H 0.11 1.16 8.06 -52.49 -0.42 0.74 16 42 H 0.12 1.32 8.06 -52.49 -0.42 0.90 16 43 H 0.11 1.62 6.46 -52.48 -0.34 1.28 16 LS Contribution 370.43 15.07 5.58 5.58 Total: -1.00 -32.14 370.43 -9.17 -41.31 By element: Atomic # 1 Polarization: 26.02 SS G_CDS: -4.90 Total: 21.12 kcal Atomic # 6 Polarization: 4.29 SS G_CDS: -5.28 Total: -0.98 kcal Atomic # 7 Polarization: -57.99 SS G_CDS: 0.29 Total: -57.70 kcal Atomic # 8 Polarization: -24.99 SS G_CDS: 0.16 Total: -24.83 kcal Atomic # 14 Polarization: 20.52 SS G_CDS: -5.02 Total: 15.50 kcal Total LS contribution 5.58 Total: 5.58 kcal Total: -32.14 -9.17 -41.31 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000343521634.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.064 kcal (2) G-P(sol) polarization free energy of solvation -32.139 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.925 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.171 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.310 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.246 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds