Wall clock time and date at job start Tue Mar 31 2020 22:13:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31412 * 1 3 3 Si 1.86804 * 119.99442 * 2 1 4 4 H 1.48498 * 109.47256 * 180.02562 * 3 2 1 5 5 H 1.48500 * 109.47120 * 300.00063 * 3 2 1 6 6 H 1.48500 * 109.47352 * 60.00023 * 3 2 1 7 7 C 1.38941 * 120.00651 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00425 * 180.02562 * 7 2 1 9 9 N 1.37106 * 119.99929 * 359.97438 * 7 2 1 10 10 C 1.34769 * 120.00013 * 180.02562 * 9 7 2 11 11 O 1.21297 * 120.00056 * 359.97438 * 10 9 7 12 12 C 1.50699 * 120.00076 * 180.02562 * 10 9 7 13 13 N 1.46501 * 109.47236 * 179.97438 * 12 10 9 14 14 C 1.34781 * 119.99976 * 179.97438 * 13 12 10 15 15 O 1.21602 * 119.99834 * 359.97438 * 14 13 12 16 16 C 1.47437 * 120.00068 * 180.02562 * 14 13 12 17 17 C 1.39722 * 120.20678 * 6.35999 * 16 14 13 18 18 C 1.37759 * 119.92695 * 180.02562 * 17 16 14 19 19 C 1.38617 * 120.35279 * 359.97438 * 18 17 16 20 20 C 1.37953 * 120.42419 * 359.74143 * 19 18 17 21 21 C 1.38970 * 120.06238 * 0.51662 * 20 19 18 22 22 N 1.38926 * 120.17829 * 179.76696 * 21 20 19 23 23 C 1.39731 * 119.99936 * 257.28240 * 22 21 20 24 24 C 1.38928 * 120.07541 * 175.76356 * 23 22 21 25 25 C 1.38098 * 119.92478 * 180.25456 * 24 23 22 26 26 C 1.38296 * 120.07402 * 359.42117 * 25 24 23 27 27 C 1.38290 * 120.14781 * 0.60146 * 26 25 24 28 28 C 1.38101 * 120.07816 * 359.67709 * 27 26 25 29 29 H 0.96999 * 120.00410 * 359.97438 * 1 2 3 30 30 H 0.97003 * 119.99567 * 0.02562 * 9 7 2 31 31 H 1.08993 * 109.47330 * 59.99310 * 12 10 9 32 32 H 1.09000 * 109.46660 * 299.99812 * 12 10 9 33 33 H 0.96991 * 120.00129 * 359.97438 * 13 12 10 34 34 H 1.07998 * 120.03703 * 0.02562 * 17 16 14 35 35 H 1.08001 * 119.82151 * 179.97438 * 18 17 16 36 36 H 1.07996 * 119.78418 * 180.02562 * 19 18 17 37 37 H 1.08001 * 119.97142 * 180.27899 * 20 19 18 38 38 H 0.96998 * 120.00236 * 77.27846 * 22 21 20 39 39 H 1.07997 * 120.03352 * 359.97438 * 24 23 22 40 40 H 1.07999 * 119.96185 * 179.71759 * 25 24 23 41 41 H 1.07998 * 119.92782 * 180.28068 * 26 25 24 42 42 H 1.08001 * 119.96111 * 179.69804 * 27 26 25 43 43 H 1.08007 * 120.03755 * 179.97438 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2480 1.6179 0.0000 4 1 3.7080 1.3467 -0.0006 5 1 1.8891 2.3965 -1.2125 6 1 1.8892 2.3966 1.2125 7 6 2.0090 -1.2032 0.0005 8 1 3.0889 -1.2031 0.0010 9 7 1.3235 -2.3906 0.0016 10 6 1.9975 -3.5577 0.0026 11 8 3.2105 -3.5576 0.0022 12 6 1.2442 -4.8629 0.0032 13 7 2.1963 -5.9763 0.0037 14 6 1.7471 -7.2471 0.0048 15 8 0.5516 -7.4693 0.0059 16 6 2.7053 -8.3676 0.0059 17 6 4.0742 -8.1219 0.1395 18 6 4.9644 -9.1732 0.1393 19 6 4.5098 -10.4760 0.0075 20 6 3.1609 -10.7357 -0.1195 21 6 2.2479 -9.6880 -0.1268 22 7 0.8894 -9.9464 -0.2595 23 6 0.2548 -9.7366 -1.4866 24 6 -1.0826 -10.0772 -1.6460 25 6 -1.7052 -9.8734 -2.8617 26 6 -1.0022 -9.3199 -3.9162 27 6 0.3293 -8.9802 -3.7611 28 6 0.9597 -9.1866 -2.5498 29 1 -0.4851 0.8400 0.0004 30 1 0.3535 -2.3907 0.0016 31 1 0.6178 -4.9213 -0.8868 32 1 0.6172 -4.9200 0.8930 33 1 3.1498 -5.7990 0.0033 34 1 4.4340 -7.1089 0.2429 35 1 6.0223 -8.9812 0.2423 36 1 5.2157 -11.2933 0.0089 37 1 2.8143 -11.7539 -0.2172 38 1 0.3813 -10.2726 0.4997 39 1 -1.6334 -10.5050 -0.8215 40 1 -2.7436 -10.1422 -2.9877 41 1 -1.4927 -9.1574 -4.8646 42 1 0.8768 -8.5526 -4.5881 43 1 1.9998 -8.9214 -2.4295 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000343521634.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:13:56 Heat of formation + Delta-G solvation = -24.740112 kcal Electronic energy + Delta-G solvation = -28203.332257 eV Core-core repulsion = 24212.658580 eV Total energy + Delta-G solvation = -3990.673678 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 339.137 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -41.71844 -40.51101 -39.76880 -39.10030 -36.53752 -36.15657 -35.20526 -33.42244 -32.43859 -31.87041 -31.34587 -29.40681 -28.79688 -26.55763 -24.61534 -23.99872 -23.26824 -22.21571 -21.45090 -21.35642 -20.13165 -19.21558 -18.52092 -18.09227 -17.40753 -17.17665 -16.82003 -16.74616 -16.53719 -16.07540 -15.82560 -15.64597 -15.45822 -15.40863 -14.92563 -14.77176 -14.51287 -14.22277 -13.95128 -13.88605 -13.72921 -13.57418 -13.25267 -12.97180 -12.92623 -12.48214 -12.46900 -12.26017 -12.12184 -11.85265 -11.60435 -11.50480 -10.76391 -10.59982 -10.27782 -10.12327 -9.98272 -9.80748 -9.77844 -8.53322 -8.36665 -6.03960 -0.22681 0.25648 0.57962 0.79186 1.33361 1.41627 1.55862 1.82587 1.89992 1.98138 2.30001 2.45136 2.80278 3.05985 3.07589 3.13652 3.66674 3.83843 4.03448 4.11323 4.15201 4.17140 4.34201 4.36853 4.38363 4.39005 4.41239 4.47524 4.65505 4.73946 4.85914 4.96818 5.17256 5.21893 5.26037 5.35019 5.36371 5.44093 5.45794 5.62921 5.76939 5.77760 5.89023 6.05471 6.42507 6.49315 6.54454 6.79923 7.00553 7.13822 7.40577 7.90223 8.63851 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.012495 B = 0.002796 C = 0.002412 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2240.271246 B =10010.186990 C =11604.797498 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.916 5.916 2 C -0.011 4.011 3 Si 0.998 3.002 4 H -0.269 1.269 5 H -0.271 1.271 6 H -0.270 1.270 7 C -0.337 4.337 8 H 0.087 0.913 9 N -0.558 5.558 10 C 0.433 3.567 11 O -0.623 6.623 12 C 0.126 3.874 13 N -0.707 5.707 14 C 0.551 3.449 15 O -0.551 6.551 16 C -0.163 4.163 17 C -0.087 4.087 18 C -0.122 4.122 19 C -0.073 4.073 20 C -0.131 4.131 21 C 0.190 3.810 22 N -0.687 5.687 23 C 0.231 3.769 24 C -0.200 4.200 25 C -0.080 4.080 26 C -0.189 4.189 27 C -0.089 4.089 28 C -0.207 4.207 29 H 0.280 0.720 30 H 0.398 0.602 31 H 0.088 0.912 32 H 0.092 0.908 33 H 0.410 0.590 34 H 0.130 0.870 35 H 0.159 0.841 36 H 0.167 0.833 37 H 0.150 0.850 38 H 0.413 0.587 39 H 0.132 0.868 40 H 0.143 0.857 41 H 0.135 0.865 42 H 0.127 0.873 43 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.612 -24.019 -2.117 24.381 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.556 5.556 2 C -0.211 4.211 3 Si 0.821 3.179 4 H -0.193 1.193 5 H -0.196 1.196 6 H -0.196 1.196 7 C -0.467 4.467 8 H 0.105 0.895 9 N -0.193 5.193 10 C 0.220 3.780 11 O -0.511 6.511 12 C -0.002 4.002 13 N -0.362 5.362 14 C 0.340 3.660 15 O -0.430 6.430 16 C -0.168 4.168 17 C -0.107 4.107 18 C -0.140 4.140 19 C -0.091 4.091 20 C -0.151 4.151 21 C 0.095 3.905 22 N -0.314 5.314 23 C 0.130 3.870 24 C -0.222 4.222 25 C -0.099 4.099 26 C -0.209 4.209 27 C -0.108 4.108 28 C -0.230 4.230 29 H 0.090 0.910 30 H 0.232 0.768 31 H 0.106 0.894 32 H 0.110 0.890 33 H 0.249 0.751 34 H 0.148 0.852 35 H 0.177 0.823 36 H 0.185 0.815 37 H 0.168 0.832 38 H 0.251 0.749 39 H 0.150 0.850 40 H 0.161 0.839 41 H 0.152 0.848 42 H 0.145 0.855 43 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges 3.543 -23.937 -2.124 24.291 hybrid contribution -0.144 1.386 0.392 1.448 sum 3.400 -22.551 -1.732 22.872 Atomic orbital electron populations 1.69688 1.07064 1.29637 1.49220 1.26153 0.96539 1.02743 0.95686 0.84799 0.78157 0.76602 0.78345 1.19330 1.19600 1.19568 1.19790 0.92991 0.83466 1.50408 0.89490 1.41847 1.09560 1.04628 1.63278 1.20353 0.88124 0.85838 0.83715 1.90461 1.15045 1.87510 1.58083 1.20698 0.91620 0.84031 1.03804 1.45645 1.11210 1.04526 1.74843 1.18505 0.88572 0.82632 0.76333 1.90766 1.16907 1.84922 1.50423 1.20381 0.94234 0.93329 1.08897 1.21524 0.91257 1.01024 0.96848 1.21507 1.01100 0.92013 0.99391 1.21674 0.95139 0.97753 0.94565 1.21676 0.93122 0.99148 1.01103 1.17582 0.84833 0.90784 0.97319 1.41451 1.05991 1.73271 1.10701 1.17747 0.91927 0.92283 0.85050 1.20784 0.93123 1.08674 0.99602 1.21181 1.00234 0.96376 0.92088 1.21163 0.94690 1.04676 1.00386 1.21109 0.95511 0.97578 0.96580 1.20666 1.00164 1.07673 0.94451 0.91026 0.76778 0.89394 0.89023 0.75095 0.85218 0.82307 0.81519 0.83183 0.74889 0.84965 0.83911 0.84752 0.85515 0.87935 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -49.08 13.05 21.66 0.28 -48.80 16 2 C -0.01 -0.55 5.50 84.92 0.47 -0.09 16 3 Si 1.00 41.91 29.55 68.60 2.03 43.94 16 4 H -0.27 -11.28 7.11 99.48 0.71 -10.57 16 5 H -0.27 -10.93 7.11 99.48 0.71 -10.22 16 6 H -0.27 -10.90 7.11 99.48 0.71 -10.19 16 7 C -0.34 -18.76 9.68 84.04 0.81 -17.94 16 8 H 0.09 5.08 7.16 -2.91 -0.02 5.06 16 9 N -0.56 -28.54 5.29 -306.99 -1.62 -30.17 16 10 C 0.43 20.49 7.85 87.66 0.69 21.18 16 11 O -0.62 -32.59 15.24 -3.08 -0.05 -32.64 16 12 C 0.13 4.88 6.15 85.63 0.53 5.41 16 13 N -0.71 -24.90 5.48 -470.10 -2.57 -27.47 16 14 C 0.55 18.56 7.30 86.67 0.63 19.19 16 15 O -0.55 -20.95 13.71 -4.04 -0.06 -21.00 16 16 C -0.16 -4.36 5.03 -19.98 -0.10 -4.47 16 17 C -0.09 -1.89 9.52 22.52 0.21 -1.68 16 18 C -0.12 -1.82 10.02 22.25 0.22 -1.60 16 19 C -0.07 -0.90 10.03 22.29 0.22 -0.68 16 20 C -0.13 -2.12 9.96 22.38 0.22 -1.90 16 21 C 0.19 4.39 4.73 38.71 0.18 4.57 16 22 N -0.69 -16.55 4.03 -179.97 -0.73 -17.28 16 23 C 0.23 6.27 5.02 38.21 0.19 6.46 16 24 C -0.20 -4.90 9.90 22.40 0.22 -4.68 16 25 C -0.08 -1.82 10.04 22.25 0.22 -1.60 16 26 C -0.19 -4.49 10.04 22.30 0.22 -4.27 16 27 C -0.09 -2.35 10.04 22.25 0.22 -2.13 16 28 C -0.21 -5.97 8.65 22.40 0.19 -5.78 16 29 H 0.28 13.98 8.31 -92.71 -0.77 13.21 16 30 H 0.40 19.68 7.90 -92.71 -0.73 18.95 16 31 H 0.09 3.34 8.14 -2.39 -0.02 3.32 16 32 H 0.09 3.39 8.14 -2.39 -0.02 3.37 16 33 H 0.41 14.13 5.51 -92.72 -0.51 13.62 16 34 H 0.13 2.84 6.45 -2.91 -0.02 2.82 16 35 H 0.16 1.47 8.06 -2.91 -0.02 1.45 16 36 H 0.17 0.87 8.06 -2.91 -0.02 0.84 16 37 H 0.15 1.82 8.06 -2.91 -0.02 1.80 16 38 H 0.41 8.71 8.84 -92.71 -0.82 7.89 16 39 H 0.13 2.69 8.06 -2.91 -0.02 2.67 16 40 H 0.14 2.40 8.06 -2.91 -0.02 2.38 16 41 H 0.13 2.54 8.06 -2.91 -0.02 2.52 16 42 H 0.13 2.90 8.06 -2.91 -0.02 2.88 16 43 H 0.10 3.06 6.46 -2.91 -0.02 3.04 16 Total: -1.00 -70.27 370.43 1.68 -68.58 By element: Atomic # 1 Polarization: 55.80 SS G_CDS: -0.97 Total: 54.83 kcal Atomic # 6 Polarization: 4.63 SS G_CDS: 5.37 Total: 10.00 kcal Atomic # 7 Polarization: -119.07 SS G_CDS: -4.64 Total: -123.71 kcal Atomic # 8 Polarization: -53.54 SS G_CDS: -0.10 Total: -53.64 kcal Atomic # 14 Polarization: 41.91 SS G_CDS: 2.03 Total: 43.94 kcal Total: -70.27 1.68 -68.58 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000343521634.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.842 kcal (2) G-P(sol) polarization free energy of solvation -70.267 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.425 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.685 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.582 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.740 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds