Wall clock time and date at job start Tue Mar 31 2020 22:19:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31411 * 1 3 3 Si 1.86797 * 120.00180 * 2 1 4 4 H 1.48503 * 109.47249 * 179.97438 * 3 2 1 5 5 H 1.48497 * 109.47291 * 299.99896 * 3 2 1 6 6 H 1.48496 * 109.46965 * 59.99893 * 3 2 1 7 7 C 1.38951 * 119.99738 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99803 * 180.02562 * 7 2 1 9 9 N 1.37100 * 120.00317 * 0.02562 * 7 2 1 10 10 C 1.34771 * 120.00000 * 179.97438 * 9 7 2 11 11 O 1.21293 * 120.00196 * 359.97438 * 10 9 7 12 12 C 1.50703 * 119.99996 * 180.02562 * 10 9 7 13 13 N 1.46494 * 109.47429 * 180.02562 * 12 10 9 14 14 C 1.34776 * 120.00220 * 180.02562 * 13 12 10 15 15 O 1.21585 * 119.99858 * 359.97438 * 14 13 12 16 16 N 1.34779 * 119.99945 * 179.97438 * 14 13 12 17 17 C 1.46506 * 119.99736 * 179.97438 * 16 14 13 18 18 C 1.52997 * 109.46784 * 180.02562 * 17 16 14 19 19 C 1.53008 * 109.46999 * 180.02562 * 18 17 16 20 20 O 1.42895 * 109.47006 * 179.97438 * 19 18 17 21 21 C 1.35951 * 116.99758 * 179.97438 * 20 19 18 22 22 C 1.38708 * 120.03040 * 0.28885 * 21 20 19 23 23 C 1.38147 * 119.96935 * 180.25012 * 22 21 20 24 24 C 1.38455 * 120.02958 * 359.46222 * 23 22 21 25 25 F 1.35101 * 119.97206 * 180.29906 * 24 23 22 26 26 C 1.38452 * 120.06193 * 0.28172 * 24 23 22 27 27 C 1.38156 * 120.03063 * 359.97438 * 26 24 23 28 28 H 0.96998 * 120.00078 * 359.97438 * 1 2 3 29 29 H 0.97002 * 119.99578 * 359.97438 * 9 7 2 30 30 H 1.08995 * 109.47333 * 59.99572 * 12 10 9 31 31 H 1.09004 * 109.46964 * 300.00115 * 12 10 9 32 32 H 0.97002 * 119.99894 * 359.97438 * 13 12 10 33 33 H 0.96993 * 120.00233 * 359.97438 * 16 14 13 34 34 H 1.08997 * 109.46725 * 59.99990 * 17 16 14 35 35 H 1.08995 * 109.47409 * 299.99983 * 17 16 14 36 36 H 1.08997 * 109.47586 * 60.00409 * 18 17 16 37 37 H 1.09003 * 109.47359 * 299.99548 * 18 17 16 38 38 H 1.09005 * 109.46539 * 60.00054 * 19 18 17 39 39 H 1.08995 * 109.46786 * 300.00191 * 19 18 17 40 40 H 1.07998 * 120.01328 * 0.02562 * 22 21 20 41 41 H 1.08002 * 119.98838 * 179.74746 * 23 22 21 42 42 H 1.07997 * 119.98751 * 179.97438 * 26 24 23 43 43 H 1.07999 * 120.02057 * 180.02562 * 27 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6177 0.0000 4 1 3.7082 1.3463 0.0006 5 1 1.8895 2.3964 -1.2125 6 1 1.8894 2.3964 1.2125 7 6 2.0088 -1.2034 0.0005 8 1 3.0888 -1.2034 0.0010 9 7 1.3233 -2.3907 0.0005 10 6 1.9972 -3.5579 0.0005 11 8 3.2101 -3.5579 0.0001 12 6 1.2437 -4.8630 0.0000 13 7 2.1956 -5.9765 0.0007 14 6 1.7463 -7.2472 -0.0002 15 8 0.5509 -7.4693 -0.0011 16 7 2.6222 -8.2716 0.0000 17 6 2.1338 -9.6528 -0.0004 18 6 3.3237 -10.6145 0.0005 19 6 2.8137 -12.0570 -0.0005 20 8 3.9251 -12.9552 -0.0003 21 6 3.6438 -14.2853 -0.0006 22 6 2.3253 -14.7159 -0.0071 23 6 2.0408 -16.0677 -0.0022 24 6 3.0711 -16.9926 -0.0020 25 9 2.7915 -18.3144 -0.0032 26 6 4.3877 -16.5642 -0.0007 27 6 4.6751 -15.2129 -0.0003 28 1 -0.4850 0.8400 0.0004 29 1 0.3533 -2.3907 0.0005 30 1 0.6173 -4.9205 -0.8902 31 1 0.6167 -4.9209 0.8897 32 1 3.1493 -5.7993 0.0011 33 1 3.5758 -8.0944 0.0003 34 1 1.5285 -9.8239 -0.8906 35 1 1.5279 -9.8243 0.8893 36 1 3.9286 -10.4433 0.8910 37 1 3.9300 -10.4433 -0.8890 38 1 2.2091 -12.2279 -0.8913 39 1 2.2072 -12.2285 0.8887 40 1 1.5214 -13.9946 -0.0125 41 1 1.0142 -16.4033 -0.0032 42 1 5.1904 -17.2867 -0.0001 43 1 5.7021 -14.8789 0.0002 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000344508652.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:19:53 Heat of formation + Delta-G solvation = -130.639104 kcal Electronic energy + Delta-G solvation = -26534.236826 eV Core-core repulsion = 22108.201799 eV Total energy + Delta-G solvation = -4426.035027 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.143 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -49.25498 -40.63527 -39.89499 -38.27595 -37.87473 -35.72330 -34.41953 -33.67838 -32.40357 -31.69070 -31.37240 -29.74864 -27.81524 -25.98139 -24.42296 -23.64871 -22.66372 -21.90133 -20.74310 -19.61192 -18.88058 -18.40781 -17.94987 -17.84237 -17.07509 -16.92685 -16.22318 -15.99378 -15.65918 -15.59850 -15.22801 -14.91775 -14.74899 -14.60807 -14.27268 -14.13742 -13.96984 -13.87439 -13.52333 -13.50094 -13.09479 -12.89222 -12.37852 -12.19778 -12.07323 -12.02772 -11.74236 -11.64442 -11.30490 -11.15556 -11.09707 -10.41973 -10.34147 -10.11845 -9.73472 -9.65875 -9.25568 -8.65860 -8.64161 -8.61396 -8.11193 -6.52671 -3.94686 0.61431 0.69721 2.39131 2.92059 3.04331 3.09287 3.21810 3.28456 3.34020 3.73720 3.81831 4.06865 4.12256 4.22894 4.32035 4.36176 4.51673 4.55251 4.61080 4.76502 4.84607 4.88509 4.99249 5.08341 5.16204 5.25982 5.33055 5.59214 5.61631 5.62043 5.65108 5.70284 5.89625 5.98466 6.06490 6.17073 6.38582 6.71136 6.82258 7.01901 7.45127 7.91446 8.17437 8.43850 8.73164 9.03640 9.38350 9.86078 10.64290 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.055308 B = 0.001212 C = 0.001187 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 506.133051 B =23098.490126 C =23573.571887 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.026 3.974 3 Si 0.932 3.068 4 H -0.267 1.267 5 H -0.280 1.280 6 H -0.280 1.280 7 C -0.305 4.305 8 H 0.106 0.894 9 N -0.549 5.549 10 C 0.428 3.572 11 O -0.598 6.598 12 C 0.128 3.872 13 N -0.723 5.723 14 C 0.705 3.295 15 O -0.598 6.598 16 N -0.750 5.750 17 C 0.145 3.855 18 C -0.132 4.132 19 C 0.062 3.938 20 O -0.310 6.310 21 C 0.125 3.875 22 C -0.181 4.181 23 C -0.112 4.112 24 C 0.056 3.944 25 F -0.142 7.142 26 C -0.113 4.113 27 C -0.124 4.124 28 H 0.274 0.726 29 H 0.396 0.604 30 H 0.082 0.918 31 H 0.082 0.918 32 H 0.407 0.593 33 H 0.398 0.602 34 H 0.069 0.931 35 H 0.069 0.931 36 H 0.083 0.917 37 H 0.083 0.917 38 H 0.069 0.931 39 H 0.069 0.931 40 H 0.140 0.860 41 H 0.139 0.861 42 H 0.142 0.858 43 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.418 -30.444 -0.003 30.922 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.534 5.534 2 C -0.177 4.177 3 Si 0.759 3.241 4 H -0.191 1.191 5 H -0.206 1.206 6 H -0.206 1.206 7 C -0.435 4.435 8 H 0.124 0.876 9 N -0.184 5.184 10 C 0.214 3.786 11 O -0.485 6.485 12 C 0.000 4.000 13 N -0.381 5.381 14 C 0.405 3.595 15 O -0.477 6.477 16 N -0.407 5.407 17 C 0.020 3.980 18 C -0.170 4.170 19 C -0.014 4.014 20 O -0.224 6.224 21 C 0.079 3.921 22 C -0.200 4.200 23 C -0.130 4.130 24 C 0.037 3.963 25 F -0.121 7.121 26 C -0.132 4.132 27 C -0.143 4.143 28 H 0.084 0.916 29 H 0.230 0.770 30 H 0.100 0.900 31 H 0.100 0.900 32 H 0.245 0.755 33 H 0.232 0.768 34 H 0.087 0.913 35 H 0.087 0.913 36 H 0.102 0.898 37 H 0.102 0.898 38 H 0.088 0.912 39 H 0.088 0.912 40 H 0.158 0.842 41 H 0.156 0.844 42 H 0.160 0.840 43 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges 5.132 -30.376 -0.004 30.807 hybrid contribution 0.299 0.780 0.001 0.836 sum 5.432 -29.596 -0.003 30.091 Atomic orbital electron populations 1.69622 1.06017 1.28428 1.49375 1.25321 0.95655 0.99920 0.96784 0.85761 0.79684 0.80833 0.77829 1.19133 1.20614 1.20619 1.19782 0.93491 0.81997 1.48186 0.87626 1.41791 1.09498 1.04453 1.62622 1.19762 0.88297 0.85017 0.85542 1.90491 1.13749 1.86862 1.57381 1.20791 0.91201 0.84837 1.03172 1.44767 1.11304 1.03303 1.78700 1.15815 0.85131 0.80575 0.78005 1.90910 1.14041 1.84291 1.58420 1.44935 1.09235 1.04892 1.81591 1.20899 0.95049 0.79263 1.02799 1.21698 0.98957 0.91496 1.04836 1.22716 0.88009 0.88389 1.02269 1.86070 1.35078 1.12911 1.88323 1.19019 0.93158 0.83536 0.96374 1.21189 0.95853 0.96315 1.06631 1.20977 0.99354 0.92298 1.00409 1.17604 0.93815 0.77835 1.07065 1.91499 1.94478 1.31761 1.94322 1.20982 0.95308 0.96042 1.00852 1.20317 0.99148 0.90565 1.04284 0.91634 0.77011 0.89981 0.89989 0.75543 0.76762 0.91293 0.91300 0.89805 0.89812 0.91237 0.91228 0.84210 0.84360 0.84005 0.84018 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -23.69 13.05 55.50 0.72 -22.96 16 2 C 0.03 0.68 5.50 -17.47 -0.10 0.58 16 3 Si 0.93 20.34 29.55 -169.99 -5.02 15.32 16 4 H -0.27 -5.81 7.11 56.52 0.40 -5.41 16 5 H -0.28 -6.03 7.11 56.52 0.40 -5.63 16 6 H -0.28 -6.04 7.11 56.52 0.40 -5.63 16 7 C -0.31 -8.22 9.68 -14.93 -0.14 -8.36 16 8 H 0.11 2.97 7.16 -52.49 -0.38 2.59 16 9 N -0.55 -13.45 5.29 -10.96 -0.06 -13.51 16 10 C 0.43 9.68 7.85 -10.99 -0.09 9.59 16 11 O -0.60 -15.06 15.24 5.55 0.08 -14.97 16 12 C 0.13 2.34 6.15 -5.20 -0.03 2.31 16 13 N -0.72 -11.75 5.53 -66.42 -0.37 -12.12 16 14 C 0.71 10.91 8.57 -86.92 -0.74 10.17 16 15 O -0.60 -11.27 16.34 5.29 0.09 -11.19 16 16 N -0.75 -8.06 5.56 -65.23 -0.36 -8.42 16 17 C 0.14 1.22 5.67 -4.04 -0.02 1.20 16 18 C -0.13 -0.78 5.70 -26.73 -0.15 -0.93 16 19 C 0.06 0.35 4.74 37.16 0.18 0.52 16 20 O -0.31 -2.32 10.14 -19.58 -0.20 -2.52 16 21 C 0.12 0.90 6.69 -39.23 -0.26 0.64 16 22 C -0.18 -1.15 9.04 -39.44 -0.36 -1.50 16 23 C -0.11 -0.73 10.02 -39.53 -0.40 -1.12 16 24 C 0.06 0.41 7.30 -39.42 -0.29 0.13 16 25 F -0.14 -1.19 17.27 2.25 0.04 -1.15 16 26 C -0.11 -0.71 10.02 -39.53 -0.40 -1.10 16 27 C -0.12 -0.80 9.99 -39.44 -0.39 -1.20 16 28 H 0.27 6.83 8.31 -40.82 -0.34 6.49 16 29 H 0.40 9.34 7.90 -40.82 -0.32 9.02 16 30 H 0.08 1.44 8.14 -51.93 -0.42 1.02 16 31 H 0.08 1.44 8.14 -51.93 -0.42 1.02 16 32 H 0.41 6.39 7.45 -40.82 -0.30 6.08 16 33 H 0.40 3.34 8.49 -40.82 -0.35 2.99 16 34 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 35 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 36 H 0.08 0.48 8.14 -51.93 -0.42 0.06 16 37 H 0.08 0.48 8.14 -51.93 -0.42 0.06 16 38 H 0.07 0.33 7.65 -51.93 -0.40 -0.07 16 39 H 0.07 0.33 7.67 -51.93 -0.40 -0.07 16 40 H 0.14 0.64 6.30 -52.49 -0.33 0.31 16 41 H 0.14 0.66 8.06 -52.49 -0.42 0.24 16 42 H 0.14 0.60 8.06 -52.49 -0.42 0.18 16 43 H 0.14 0.70 8.06 -52.49 -0.42 0.28 16 LS Contribution 380.15 15.07 5.73 5.73 Total: -1.00 -33.01 380.15 -7.96 -40.97 By element: Atomic # 1 Polarization: 19.32 SS G_CDS: -5.41 Total: 13.90 kcal Atomic # 6 Polarization: 14.12 SS G_CDS: -3.19 Total: 10.93 kcal Atomic # 7 Polarization: -56.95 SS G_CDS: -0.06 Total: -57.01 kcal Atomic # 8 Polarization: -28.65 SS G_CDS: -0.03 Total: -28.68 kcal Atomic # 9 Polarization: -1.19 SS G_CDS: 0.04 Total: -1.15 kcal Atomic # 14 Polarization: 20.34 SS G_CDS: -5.02 Total: 15.32 kcal Total LS contribution 5.73 Total: 5.73 kcal Total: -33.01 -7.96 -40.97 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000344508652.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -89.673 kcal (2) G-P(sol) polarization free energy of solvation -33.009 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -122.682 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.957 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.966 kcal (6) G-S(sol) free energy of system = (1) + (5) -130.639 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds