Wall clock time and date at job start Tue Mar 31 2020 22:19:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31411 * 1 3 3 Si 1.86797 * 120.00180 * 2 1 4 4 H 1.48503 * 109.47249 * 179.97438 * 3 2 1 5 5 H 1.48497 * 109.47291 * 299.99896 * 3 2 1 6 6 H 1.48496 * 109.46965 * 59.99893 * 3 2 1 7 7 C 1.38951 * 119.99738 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99803 * 180.02562 * 7 2 1 9 9 N 1.37100 * 120.00317 * 0.02562 * 7 2 1 10 10 C 1.34771 * 120.00000 * 179.97438 * 9 7 2 11 11 O 1.21293 * 120.00196 * 359.97438 * 10 9 7 12 12 C 1.50703 * 119.99996 * 180.02562 * 10 9 7 13 13 N 1.46494 * 109.47429 * 180.02562 * 12 10 9 14 14 C 1.34776 * 120.00220 * 180.02562 * 13 12 10 15 15 O 1.21585 * 119.99858 * 359.97438 * 14 13 12 16 16 N 1.34779 * 119.99945 * 179.97438 * 14 13 12 17 17 C 1.46506 * 119.99736 * 179.97438 * 16 14 13 18 18 C 1.52997 * 109.46784 * 180.02562 * 17 16 14 19 19 C 1.53008 * 109.46999 * 180.02562 * 18 17 16 20 20 O 1.42895 * 109.47006 * 179.97438 * 19 18 17 21 21 C 1.35951 * 116.99758 * 179.97438 * 20 19 18 22 22 C 1.38708 * 120.03040 * 0.28885 * 21 20 19 23 23 C 1.38147 * 119.96935 * 180.25012 * 22 21 20 24 24 C 1.38455 * 120.02958 * 359.46222 * 23 22 21 25 25 F 1.35101 * 119.97206 * 180.29906 * 24 23 22 26 26 C 1.38452 * 120.06193 * 0.28172 * 24 23 22 27 27 C 1.38156 * 120.03063 * 359.97438 * 26 24 23 28 28 H 0.96998 * 120.00078 * 359.97438 * 1 2 3 29 29 H 0.97002 * 119.99578 * 359.97438 * 9 7 2 30 30 H 1.08995 * 109.47333 * 59.99572 * 12 10 9 31 31 H 1.09004 * 109.46964 * 300.00115 * 12 10 9 32 32 H 0.97002 * 119.99894 * 359.97438 * 13 12 10 33 33 H 0.96993 * 120.00233 * 359.97438 * 16 14 13 34 34 H 1.08997 * 109.46725 * 59.99990 * 17 16 14 35 35 H 1.08995 * 109.47409 * 299.99983 * 17 16 14 36 36 H 1.08997 * 109.47586 * 60.00409 * 18 17 16 37 37 H 1.09003 * 109.47359 * 299.99548 * 18 17 16 38 38 H 1.09005 * 109.46539 * 60.00054 * 19 18 17 39 39 H 1.08995 * 109.46786 * 300.00191 * 19 18 17 40 40 H 1.07998 * 120.01328 * 0.02562 * 22 21 20 41 41 H 1.08002 * 119.98838 * 179.74746 * 23 22 21 42 42 H 1.07997 * 119.98751 * 179.97438 * 26 24 23 43 43 H 1.07999 * 120.02057 * 180.02562 * 27 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6177 0.0000 4 1 3.7082 1.3463 0.0006 5 1 1.8895 2.3964 -1.2125 6 1 1.8894 2.3964 1.2125 7 6 2.0088 -1.2034 0.0005 8 1 3.0888 -1.2034 0.0010 9 7 1.3233 -2.3907 0.0005 10 6 1.9972 -3.5579 0.0005 11 8 3.2101 -3.5579 0.0001 12 6 1.2437 -4.8630 0.0000 13 7 2.1956 -5.9765 0.0007 14 6 1.7463 -7.2472 -0.0002 15 8 0.5509 -7.4693 -0.0011 16 7 2.6222 -8.2716 0.0000 17 6 2.1338 -9.6528 -0.0004 18 6 3.3237 -10.6145 0.0005 19 6 2.8137 -12.0570 -0.0005 20 8 3.9251 -12.9552 -0.0003 21 6 3.6438 -14.2853 -0.0006 22 6 2.3253 -14.7159 -0.0071 23 6 2.0408 -16.0677 -0.0022 24 6 3.0711 -16.9926 -0.0020 25 9 2.7915 -18.3144 -0.0032 26 6 4.3877 -16.5642 -0.0007 27 6 4.6751 -15.2129 -0.0003 28 1 -0.4850 0.8400 0.0004 29 1 0.3533 -2.3907 0.0005 30 1 0.6173 -4.9205 -0.8902 31 1 0.6167 -4.9209 0.8897 32 1 3.1493 -5.7993 0.0011 33 1 3.5758 -8.0944 0.0003 34 1 1.5285 -9.8239 -0.8906 35 1 1.5279 -9.8243 0.8893 36 1 3.9286 -10.4433 0.8910 37 1 3.9300 -10.4433 -0.8890 38 1 2.2091 -12.2279 -0.8913 39 1 2.2072 -12.2285 0.8887 40 1 1.5214 -13.9946 -0.0125 41 1 1.0142 -16.4033 -0.0032 42 1 5.1904 -17.2867 -0.0001 43 1 5.7021 -14.8789 0.0002 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000344508652.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:19:52 Heat of formation + Delta-G solvation = -154.308376 kcal Electronic energy + Delta-G solvation = -26535.263203 eV Core-core repulsion = 22108.201799 eV Total energy + Delta-G solvation = -4427.061404 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.143 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -49.83098 -41.24058 -41.05062 -40.01175 -38.40073 -36.63362 -36.16504 -35.24884 -33.39736 -33.08572 -32.17485 -30.31077 -29.20775 -26.99022 -25.99369 -24.21375 -23.21914 -22.45819 -21.91347 -21.34563 -20.10074 -19.53983 -19.29332 -18.39286 -17.64595 -17.46134 -17.37341 -17.32150 -16.86671 -16.52199 -16.47688 -15.96365 -15.90012 -15.70350 -15.39296 -15.16649 -15.03884 -14.90955 -14.56968 -14.02235 -13.93233 -13.73947 -13.63289 -13.53551 -13.34216 -12.96814 -12.90497 -12.53872 -12.43087 -12.41963 -12.10339 -11.76037 -11.56613 -11.55976 -11.44125 -10.53821 -10.42258 -10.19352 -10.08640 -9.80493 -9.12597 -8.49925 -5.99930 0.15543 0.18742 1.36228 1.43518 1.51989 1.59484 1.91425 2.12898 2.16011 2.31005 2.56019 3.07609 3.17674 3.32326 3.36432 3.68450 3.80491 3.91837 3.95799 4.03082 4.14035 4.23472 4.31345 4.42236 4.43806 4.46128 4.49192 4.61644 4.67411 4.90557 5.06735 5.09345 5.12578 5.14674 5.22839 5.32603 5.40310 5.48016 5.69566 5.92802 5.97461 6.34513 6.49669 7.04041 7.05179 7.44469 7.54449 7.96287 8.67225 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.055308 B = 0.001212 C = 0.001187 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 506.133051 B =23098.490126 C =23573.571887 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.916 5.916 2 C -0.009 4.009 3 Si 0.996 3.004 4 H -0.270 1.270 5 H -0.272 1.272 6 H -0.272 1.272 7 C -0.337 4.337 8 H 0.086 0.914 9 N -0.559 5.559 10 C 0.433 3.567 11 O -0.624 6.624 12 C 0.142 3.858 13 N -0.725 5.725 14 C 0.704 3.296 15 O -0.632 6.632 16 N -0.733 5.733 17 C 0.143 3.857 18 C -0.119 4.119 19 C 0.058 3.942 20 O -0.322 6.322 21 C 0.113 3.887 22 C -0.184 4.184 23 C -0.116 4.116 24 C 0.035 3.965 25 F -0.152 7.152 26 C -0.113 4.113 27 C -0.131 4.131 28 H 0.279 0.721 29 H 0.399 0.601 30 H 0.092 0.908 31 H 0.092 0.908 32 H 0.411 0.589 33 H 0.412 0.588 34 H 0.067 0.933 35 H 0.066 0.934 36 H 0.088 0.912 37 H 0.088 0.912 38 H 0.079 0.921 39 H 0.079 0.921 40 H 0.157 0.843 41 H 0.152 0.848 42 H 0.159 0.841 43 H 0.154 0.846 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.835 -30.853 -0.004 31.400 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.556 5.556 2 C -0.210 4.210 3 Si 0.819 3.181 4 H -0.194 1.194 5 H -0.197 1.197 6 H -0.197 1.197 7 C -0.466 4.466 8 H 0.104 0.896 9 N -0.195 5.195 10 C 0.220 3.780 11 O -0.512 6.512 12 C 0.013 3.987 13 N -0.382 5.382 14 C 0.404 3.596 15 O -0.514 6.514 16 N -0.390 5.390 17 C 0.019 3.981 18 C -0.156 4.156 19 C -0.017 4.017 20 O -0.235 6.235 21 C 0.067 3.933 22 C -0.202 4.202 23 C -0.135 4.135 24 C 0.016 3.984 25 F -0.131 7.131 26 C -0.132 4.132 27 C -0.150 4.150 28 H 0.089 0.911 29 H 0.233 0.767 30 H 0.110 0.890 31 H 0.110 0.890 32 H 0.248 0.752 33 H 0.248 0.752 34 H 0.085 0.915 35 H 0.085 0.915 36 H 0.106 0.894 37 H 0.106 0.894 38 H 0.097 0.903 39 H 0.098 0.902 40 H 0.174 0.826 41 H 0.170 0.830 42 H 0.177 0.823 43 H 0.172 0.828 Dipole moment (debyes) X Y Z Total from point charges 5.573 -30.828 -0.005 31.328 hybrid contribution 0.190 0.819 0.001 0.841 sum 5.762 -30.010 -0.004 30.558 Atomic orbital electron populations 1.69684 1.07004 1.29538 1.49401 1.26102 0.96496 1.02610 0.95798 0.84824 0.78171 0.76807 0.78259 1.19400 1.19698 1.19707 1.19780 0.92976 0.83567 1.50304 0.89559 1.41835 1.09596 1.04582 1.63471 1.20441 0.88128 0.85934 0.83449 1.90469 1.15175 1.87568 1.57994 1.20577 0.90996 0.83036 1.04068 1.44688 1.11042 1.03303 1.79183 1.15929 0.85126 0.80805 0.77770 1.90888 1.15696 1.84729 1.60073 1.44871 1.09449 1.04805 1.79827 1.21028 0.96142 0.78280 1.02615 1.21538 0.97761 0.91054 1.05293 1.22798 0.87810 0.87800 1.03305 1.86036 1.35894 1.13147 1.88465 1.19230 0.93753 0.83585 0.96735 1.21383 0.96099 0.96546 1.06218 1.21191 0.99968 0.92346 0.99971 1.17883 0.94682 0.77621 1.08212 1.91471 1.94592 1.32457 1.94532 1.21189 0.95447 0.96420 1.00102 1.20532 0.99786 0.90564 1.04116 0.91102 0.76692 0.89029 0.89035 0.75167 0.75182 0.91510 0.91518 0.89359 0.89364 0.90251 0.90248 0.82596 0.83022 0.82337 0.82803 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -48.21 13.05 21.66 0.28 -47.93 16 2 C -0.01 -0.49 5.50 84.93 0.47 -0.02 16 3 Si 1.00 41.30 29.55 68.60 2.03 43.33 16 4 H -0.27 -11.18 7.11 99.48 0.71 -10.48 16 5 H -0.27 -10.85 7.11 99.48 0.71 -10.14 16 6 H -0.27 -10.85 7.11 99.48 0.71 -10.14 16 7 C -0.34 -18.35 9.68 84.04 0.81 -17.54 16 8 H 0.09 4.95 7.16 -2.91 -0.02 4.93 16 9 N -0.56 -27.67 5.29 -306.98 -1.62 -29.29 16 10 C 0.43 19.60 7.85 87.66 0.69 20.29 16 11 O -0.62 -31.54 15.24 -3.07 -0.05 -31.59 16 12 C 0.14 5.07 6.15 85.64 0.53 5.60 16 13 N -0.72 -22.78 5.53 -482.31 -2.67 -25.45 16 14 C 0.70 20.88 8.57 179.05 1.53 22.41 16 15 O -0.63 -23.20 16.34 -3.99 -0.07 -23.26 16 16 N -0.73 -14.46 5.56 -478.54 -2.66 -17.12 16 17 C 0.14 2.16 5.67 86.38 0.49 2.65 16 18 C -0.12 -1.14 5.70 30.60 0.17 -0.96 16 19 C 0.06 0.53 4.74 71.98 0.34 0.87 16 20 O -0.32 -4.27 10.14 -92.99 -0.94 -5.21 16 21 C 0.11 1.48 6.69 22.50 0.15 1.63 16 22 C -0.18 -2.07 9.04 22.36 0.20 -1.87 16 23 C -0.12 -1.40 10.02 22.30 0.22 -1.18 16 24 C 0.04 0.50 7.30 22.37 0.16 0.66 16 25 F -0.15 -2.51 17.27 44.97 0.78 -1.73 16 26 C -0.11 -1.31 10.02 22.30 0.22 -1.09 16 27 C -0.13 -1.55 9.99 22.36 0.22 -1.33 16 28 H 0.28 13.73 8.31 -92.71 -0.77 12.96 16 29 H 0.40 18.98 7.90 -92.71 -0.73 18.25 16 30 H 0.09 3.14 8.14 -2.39 -0.02 3.12 16 31 H 0.09 3.14 8.14 -2.39 -0.02 3.12 16 32 H 0.41 12.47 7.45 -92.71 -0.69 11.78 16 33 H 0.41 6.05 8.49 -92.71 -0.79 5.26 16 34 H 0.07 1.08 8.14 -2.39 -0.02 1.06 16 35 H 0.07 1.08 8.14 -2.39 -0.02 1.06 16 36 H 0.09 0.81 8.14 -2.39 -0.02 0.79 16 37 H 0.09 0.81 8.14 -2.39 -0.02 0.79 16 38 H 0.08 0.58 7.65 -2.38 -0.02 0.56 16 39 H 0.08 0.58 7.67 -2.39 -0.02 0.56 16 40 H 0.16 1.13 6.30 -2.91 -0.02 1.11 16 41 H 0.15 1.29 8.06 -2.91 -0.02 1.27 16 42 H 0.16 1.16 8.06 -2.91 -0.02 1.14 16 43 H 0.15 1.33 8.06 -2.91 -0.02 1.30 16 Total: -1.00 -70.02 380.15 0.18 -69.84 By element: Atomic # 1 Polarization: 39.41 SS G_CDS: -1.12 Total: 38.28 kcal Atomic # 6 Polarization: 23.91 SS G_CDS: 6.22 Total: 30.14 kcal Atomic # 7 Polarization: -113.12 SS G_CDS: -6.67 Total: -119.79 kcal Atomic # 8 Polarization: -59.01 SS G_CDS: -1.05 Total: -60.06 kcal Atomic # 9 Polarization: -2.51 SS G_CDS: 0.78 Total: -1.73 kcal Atomic # 14 Polarization: 41.30 SS G_CDS: 2.03 Total: 43.33 kcal Total: -70.02 0.18 -69.84 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000344508652.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -84.470 kcal (2) G-P(sol) polarization free energy of solvation -70.018 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -154.488 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.179 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.839 kcal (6) G-S(sol) free energy of system = (1) + (5) -154.308 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds