Wall clock time and date at job start Tue Mar 31 2020 22:21:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86807 * 119.99539 * 2 1 4 4 H 1.48505 * 109.46885 * 180.02562 * 3 2 1 5 5 H 1.48496 * 109.47386 * 299.99821 * 3 2 1 6 6 H 1.48500 * 109.46931 * 60.00426 * 3 2 1 7 7 C 1.37875 * 120.00325 * 180.02562 * 2 1 3 8 8 H 1.07998 * 119.99982 * 180.02562 * 7 2 1 9 9 C 1.50698 * 119.99846 * 359.97438 * 7 2 1 10 10 N 1.46500 * 109.47060 * 180.02562 * 9 7 2 11 11 C 1.46499 * 120.00080 * 278.10491 * 10 9 7 12 12 C 1.50700 * 109.47126 * 270.00311 * 11 10 9 13 13 C 1.38672 * 120.41687 * 269.71440 * 12 11 10 14 14 C 1.38625 * 118.42211 * 179.78320 * 13 12 11 15 15 C 1.38232 * 119.15925 * 0.51835 * 14 13 12 16 16 N 1.31859 * 120.75891 * 359.72157 * 15 14 13 17 17 C 1.31881 * 121.73060 * 0.02562 * 16 15 14 18 18 C 1.34781 * 120.00183 * 98.10529 * 10 9 7 19 19 O 1.21522 * 119.99958 * 186.13750 * 18 10 9 20 20 C 1.48027 * 119.99910 * 6.14058 * 18 10 9 21 21 C 1.39555 * 120.00165 * 150.21952 * 20 18 10 22 22 C 1.37818 * 119.99968 * 179.97438 * 21 20 18 23 23 C 1.39548 * 120.00351 * 0.02562 * 22 21 20 24 24 C 1.48036 * 119.99991 * 179.97438 * 23 22 21 25 25 N 1.34776 * 119.99845 * 179.97438 * 24 23 22 26 26 O 1.21526 * 120.00363 * 0.02562 * 24 23 22 27 27 C 1.39552 * 119.99946 * 0.27253 * 23 22 21 28 28 C 1.37819 * 119.99943 * 359.47364 * 27 23 22 29 29 H 0.97000 * 119.99904 * 359.97438 * 1 2 3 30 30 H 1.09002 * 109.47329 * 60.00150 * 9 7 2 31 31 H 1.09007 * 109.47101 * 300.00170 * 9 7 2 32 32 H 1.09002 * 109.46913 * 30.00001 * 11 10 9 33 33 H 1.09001 * 109.47289 * 149.99471 * 11 10 9 34 34 H 1.08000 * 120.78600 * 0.02562 * 13 12 11 35 35 H 1.07991 * 120.42227 * 180.22442 * 14 13 12 36 36 H 1.07989 * 119.62035 * 179.75029 * 15 14 13 37 37 H 1.08004 * 119.61836 * 179.97438 * 17 16 15 38 38 H 1.08005 * 120.00095 * 359.97438 * 21 20 18 39 39 H 1.08012 * 119.99558 * 179.97438 * 22 21 20 40 40 H 0.96996 * 120.00352 * 0.02562 * 25 24 23 41 41 H 0.97005 * 119.99963 * 179.72626 * 25 24 23 42 42 H 1.07998 * 120.00183 * 179.69668 * 27 23 22 43 43 H 1.08002 * 120.00121 * 180.23104 * 28 27 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6179 0.0000 4 1 3.7092 1.3466 -0.0006 5 1 1.8904 2.3966 -1.2125 6 1 1.8903 2.3965 1.2126 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1939 -0.0001 9 6 1.2512 -2.4991 -0.0005 10 7 2.2032 -3.6126 -0.0005 11 6 2.8152 -4.0531 -1.2566 12 6 1.9559 -5.1182 -1.8876 13 6 2.1683 -6.4568 -1.5942 14 6 1.3507 -7.4016 -2.1945 15 6 0.3648 -6.9818 -3.0678 16 7 0.1948 -5.7002 -3.3272 17 6 0.9505 -4.7737 -2.7707 18 6 2.5161 -4.2317 1.1550 19 8 3.3868 -5.0793 1.1738 20 6 1.7991 -3.8794 2.4012 21 6 1.6261 -4.8372 3.4013 22 6 0.9590 -4.5090 4.5618 23 6 0.4561 -3.2191 4.7366 24 6 -0.2610 -2.8667 5.9828 25 7 -0.7463 -1.6208 6.1518 26 8 -0.4112 -3.7006 6.8540 27 6 0.6236 -2.2630 3.7338 28 6 1.2952 -2.5897 2.5756 29 1 -0.4850 0.8401 0.0004 30 1 0.6242 -2.5567 -0.8903 31 1 0.6248 -2.5570 0.8897 32 1 2.9004 -3.2051 -1.9362 33 1 3.8069 -4.4582 -1.0551 34 1 2.9496 -6.7557 -0.9111 35 1 1.4852 -8.4527 -1.9862 36 1 -0.2737 -7.7118 -3.5427 37 1 0.7816 -3.7337 -3.0080 38 1 2.0150 -5.8357 3.2660 39 1 0.8248 -5.2504 5.3357 40 1 -0.6261 -0.9550 5.4567 41 1 -1.2196 -1.3910 6.9668 42 1 0.2301 -1.2661 3.8670 43 1 1.4281 -1.8487 1.8011 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000345057889.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:21:44 Heat of formation + Delta-G solvation = 11.463894 kcal Electronic energy + Delta-G solvation = -28877.816038 eV Core-core repulsion = 24888.712283 eV Total energy + Delta-G solvation = -3989.103754 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 339.137 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -40.39735 -39.89499 -39.17519 -37.37145 -35.59750 -33.82248 -33.41442 -32.31311 -31.63379 -30.64441 -30.50171 -27.80318 -26.45012 -24.33901 -23.48788 -23.00099 -22.35447 -21.84339 -20.58156 -19.19797 -17.95446 -17.06463 -16.98243 -16.70240 -16.54749 -15.93148 -15.84479 -15.20386 -14.86882 -14.77228 -14.68042 -14.33267 -14.18477 -13.75442 -13.66366 -13.35997 -13.12739 -13.01123 -12.80264 -12.53746 -12.22740 -12.04369 -11.83678 -11.53869 -11.25746 -11.13527 -11.02149 -10.46064 -10.18793 -10.02050 -9.89054 -9.72946 -9.66665 -9.33470 -9.28234 -8.91093 -8.80588 -8.74104 -8.37159 -7.97494 -6.44684 -4.55586 0.81402 1.25519 1.47760 1.70281 2.76951 3.06297 3.17241 3.20983 3.44014 3.53304 3.64647 4.09583 4.13781 4.23224 4.63374 4.84545 4.87498 4.98302 5.08662 5.11939 5.13107 5.22329 5.28362 5.29685 5.58334 5.64174 5.76830 5.83633 5.98940 6.02344 6.11268 6.30258 6.37097 6.44994 6.49335 6.55768 6.67875 6.75025 6.81319 6.89281 6.98963 7.19613 7.27909 7.34054 7.50393 7.74104 8.07051 8.15164 8.25058 8.53277 8.74075 9.13526 10.59280 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.007940 B = 0.004614 C = 0.003295 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3525.610599 B = 6067.650785 C = 8494.946810 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.878 5.878 2 C 0.071 3.929 3 Si 0.896 3.104 4 H -0.270 1.270 5 H -0.280 1.280 6 H -0.280 1.280 7 C -0.548 4.548 8 H 0.068 0.932 9 C 0.205 3.795 10 N -0.581 5.581 11 C 0.160 3.840 12 C -0.147 4.147 13 C -0.058 4.058 14 C -0.181 4.181 15 C 0.091 3.909 16 N -0.489 5.489 17 C 0.116 3.884 18 C 0.557 3.443 19 O -0.563 6.563 20 C -0.105 4.105 21 C -0.079 4.079 22 C -0.084 4.084 23 C -0.129 4.129 24 C 0.566 3.434 25 N -0.851 5.851 26 O -0.548 6.548 27 C -0.099 4.099 28 C -0.104 4.104 29 H 0.269 0.731 30 H 0.036 0.964 31 H 0.068 0.932 32 H 0.096 0.904 33 H 0.087 0.913 34 H 0.137 0.863 35 H 0.130 0.870 36 H 0.150 0.850 37 H 0.159 0.841 38 H 0.132 0.868 39 H 0.134 0.866 40 H 0.404 0.596 41 H 0.402 0.598 42 H 0.128 0.872 43 H 0.210 0.790 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.039 -5.006 1.458 5.214 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.514 5.514 2 C -0.135 4.135 3 Si 0.723 3.277 4 H -0.194 1.194 5 H -0.206 1.206 6 H -0.206 1.206 7 C -0.586 4.586 8 H 0.087 0.913 9 C 0.086 3.914 10 N -0.310 5.310 11 C 0.036 3.964 12 C -0.150 4.150 13 C -0.084 4.084 14 C -0.201 4.201 15 C -0.067 4.067 16 N -0.197 5.197 17 C -0.041 4.041 18 C 0.346 3.654 19 O -0.445 6.445 20 C -0.108 4.108 21 C -0.098 4.098 22 C -0.103 4.103 23 C -0.132 4.132 24 C 0.353 3.647 25 N -0.415 5.415 26 O -0.427 6.427 27 C -0.117 4.117 28 C -0.121 4.121 29 H 0.079 0.921 30 H 0.054 0.946 31 H 0.085 0.915 32 H 0.114 0.886 33 H 0.105 0.895 34 H 0.155 0.845 35 H 0.148 0.852 36 H 0.167 0.833 37 H 0.176 0.824 38 H 0.150 0.850 39 H 0.152 0.848 40 H 0.235 0.765 41 H 0.233 0.767 42 H 0.146 0.854 43 H 0.226 0.774 Dipole moment (debyes) X Y Z Total from point charges -0.351 -5.686 1.301 5.844 hybrid contribution 0.726 1.195 0.570 1.510 sum 0.374 -4.491 1.871 4.880 Atomic orbital electron populations 1.69947 1.05942 1.27819 1.47680 1.25000 0.94913 0.99465 0.94125 0.86451 0.80349 0.82844 0.78067 1.19401 1.20599 1.20555 1.21486 0.94170 0.90072 1.52866 0.91339 1.20393 0.88201 0.82437 1.00353 1.48085 1.44461 1.33579 1.04880 1.20165 0.95024 0.95277 0.85885 1.21416 0.99231 0.95699 0.98625 1.21659 0.97964 0.92431 0.96393 1.22106 0.97813 1.00625 0.99518 1.22709 0.95857 0.92843 0.95255 1.67710 1.26107 1.01786 1.24131 1.22823 0.90031 0.99228 0.92026 1.18339 0.82484 0.80896 0.83671 1.90657 1.32612 1.34798 1.86406 1.20177 1.00332 0.95268 0.95046 1.21126 0.97076 0.99478 0.92115 1.21025 0.96675 0.95305 0.97317 1.20021 1.02591 0.95883 0.94731 1.18438 0.77724 0.81953 0.86573 1.43784 1.60425 1.13243 1.24039 1.90769 1.58810 1.49046 1.44025 1.21323 0.98942 0.98489 0.92993 1.23526 0.92005 0.98089 0.98434 0.92066 0.94557 0.91458 0.88616 0.89500 0.84534 0.85209 0.83255 0.82418 0.85012 0.84790 0.76524 0.76737 0.85448 0.77402 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -20.89 13.29 55.43 0.74 -20.15 16 2 C 0.07 1.61 5.33 -17.82 -0.09 1.51 16 3 Si 0.90 18.16 29.54 -169.99 -5.02 13.14 16 4 H -0.27 -5.53 7.11 56.52 0.40 -5.13 16 5 H -0.28 -5.77 7.11 56.52 0.40 -5.37 16 6 H -0.28 -5.61 7.11 56.52 0.40 -5.21 16 7 C -0.55 -12.28 7.47 -34.44 -0.26 -12.53 16 8 H 0.07 1.58 7.81 -52.49 -0.41 1.17 16 9 C 0.21 4.30 4.64 -5.19 -0.02 4.28 16 10 N -0.58 -11.12 2.45 -177.48 -0.43 -11.56 16 11 C 0.16 2.68 5.61 -5.19 -0.03 2.65 16 12 C -0.15 -2.32 5.48 -104.48 -0.57 -2.89 16 13 C -0.06 -0.85 9.86 -39.28 -0.39 -1.24 16 14 C -0.18 -2.31 10.11 -39.44 -0.40 -2.71 16 15 C 0.09 1.21 11.18 -17.54 -0.20 1.01 16 16 N -0.49 -7.78 10.36 -13.25 -0.14 -7.92 16 17 C 0.12 1.86 10.86 -17.55 -0.19 1.67 16 18 C 0.56 11.01 7.46 -12.24 -0.09 10.92 16 19 O -0.56 -11.73 16.21 5.35 0.09 -11.64 16 20 C -0.11 -1.95 5.59 -104.90 -0.59 -2.54 16 21 C -0.08 -1.32 9.58 -39.24 -0.38 -1.69 16 22 C -0.08 -1.33 9.58 -39.25 -0.38 -1.71 16 23 C -0.13 -2.01 5.88 -104.90 -0.62 -2.63 16 24 C 0.57 8.43 8.05 -12.24 -0.10 8.33 16 25 N -0.85 -9.08 8.82 30.57 0.27 -8.81 16 26 O -0.55 -9.80 17.17 5.34 0.09 -9.71 16 27 C -0.10 -1.56 9.53 -39.24 -0.37 -1.94 16 28 C -0.10 -1.91 7.47 -39.24 -0.29 -2.20 16 29 H 0.27 6.13 8.31 -40.82 -0.34 5.79 16 30 H 0.04 0.81 8.13 -51.93 -0.42 0.39 16 31 H 0.07 1.46 4.08 -51.96 -0.21 1.25 16 32 H 0.10 1.54 8.02 -51.93 -0.42 1.12 16 33 H 0.09 1.43 7.30 -51.93 -0.38 1.05 16 34 H 0.14 1.99 8.02 -52.49 -0.42 1.57 16 35 H 0.13 1.28 8.06 -52.49 -0.42 0.85 16 36 H 0.15 1.52 8.06 -52.49 -0.42 1.10 16 37 H 0.16 2.46 8.06 -52.48 -0.42 2.03 16 38 H 0.13 2.04 7.91 -52.48 -0.42 1.63 16 39 H 0.13 1.96 7.64 -52.48 -0.40 1.56 16 40 H 0.40 3.61 6.85 -40.82 -0.28 3.33 16 41 H 0.40 3.49 8.93 -40.82 -0.36 3.12 16 42 H 0.13 1.70 6.39 -52.49 -0.34 1.36 16 43 H 0.21 4.27 2.99 -52.49 -0.16 4.12 16 LS Contribution 369.38 15.07 5.57 5.57 Total: -1.00 -28.62 369.38 -8.42 -37.04 By element: Atomic # 1 Polarization: 20.36 SS G_CDS: -4.62 Total: 15.74 kcal Atomic # 6 Polarization: 3.27 SS G_CDS: -4.96 Total: -1.69 kcal Atomic # 7 Polarization: -48.87 SS G_CDS: 0.43 Total: -48.44 kcal Atomic # 8 Polarization: -21.53 SS G_CDS: 0.18 Total: -21.35 kcal Atomic # 14 Polarization: 18.16 SS G_CDS: -5.02 Total: 13.14 kcal Total LS contribution 5.57 Total: 5.57 kcal Total: -28.62 -8.42 -37.04 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000345057889.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.501 kcal (2) G-P(sol) polarization free energy of solvation -28.617 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.884 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.420 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.037 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.464 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds