Wall clock time and date at job start Tue Mar 31 2020 22:21:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86807 * 119.99539 * 2 1 4 4 H 1.48505 * 109.46885 * 180.02562 * 3 2 1 5 5 H 1.48496 * 109.47386 * 299.99821 * 3 2 1 6 6 H 1.48500 * 109.46931 * 60.00426 * 3 2 1 7 7 C 1.37875 * 120.00325 * 180.02562 * 2 1 3 8 8 H 1.07998 * 119.99982 * 180.02562 * 7 2 1 9 9 C 1.50698 * 119.99846 * 359.97438 * 7 2 1 10 10 N 1.46500 * 109.47060 * 180.02562 * 9 7 2 11 11 C 1.46499 * 120.00080 * 278.10491 * 10 9 7 12 12 C 1.50700 * 109.47126 * 270.00311 * 11 10 9 13 13 C 1.38672 * 120.41687 * 269.71440 * 12 11 10 14 14 C 1.38625 * 118.42211 * 179.78320 * 13 12 11 15 15 C 1.38232 * 119.15925 * 0.51835 * 14 13 12 16 16 N 1.31859 * 120.75891 * 359.72157 * 15 14 13 17 17 C 1.31881 * 121.73060 * 0.02562 * 16 15 14 18 18 C 1.34781 * 120.00183 * 98.10529 * 10 9 7 19 19 O 1.21522 * 119.99958 * 186.13750 * 18 10 9 20 20 C 1.48027 * 119.99910 * 6.14058 * 18 10 9 21 21 C 1.39555 * 120.00165 * 150.21952 * 20 18 10 22 22 C 1.37818 * 119.99968 * 179.97438 * 21 20 18 23 23 C 1.39548 * 120.00351 * 0.02562 * 22 21 20 24 24 C 1.48036 * 119.99991 * 179.97438 * 23 22 21 25 25 N 1.34776 * 119.99845 * 179.97438 * 24 23 22 26 26 O 1.21526 * 120.00363 * 0.02562 * 24 23 22 27 27 C 1.39552 * 119.99946 * 0.27253 * 23 22 21 28 28 C 1.37819 * 119.99943 * 359.47364 * 27 23 22 29 29 H 0.97000 * 119.99904 * 359.97438 * 1 2 3 30 30 H 1.09002 * 109.47329 * 60.00150 * 9 7 2 31 31 H 1.09007 * 109.47101 * 300.00170 * 9 7 2 32 32 H 1.09002 * 109.46913 * 30.00001 * 11 10 9 33 33 H 1.09001 * 109.47289 * 149.99471 * 11 10 9 34 34 H 1.08000 * 120.78600 * 0.02562 * 13 12 11 35 35 H 1.07991 * 120.42227 * 180.22442 * 14 13 12 36 36 H 1.07989 * 119.62035 * 179.75029 * 15 14 13 37 37 H 1.08004 * 119.61836 * 179.97438 * 17 16 15 38 38 H 1.08005 * 120.00095 * 359.97438 * 21 20 18 39 39 H 1.08012 * 119.99558 * 179.97438 * 22 21 20 40 40 H 0.96996 * 120.00352 * 0.02562 * 25 24 23 41 41 H 0.97005 * 119.99963 * 179.72626 * 25 24 23 42 42 H 1.07998 * 120.00183 * 179.69668 * 27 23 22 43 43 H 1.08002 * 120.00121 * 180.23104 * 28 27 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6179 0.0000 4 1 3.7092 1.3466 -0.0006 5 1 1.8904 2.3966 -1.2125 6 1 1.8903 2.3965 1.2126 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1939 -0.0001 9 6 1.2512 -2.4991 -0.0005 10 7 2.2032 -3.6126 -0.0005 11 6 2.8152 -4.0531 -1.2566 12 6 1.9559 -5.1182 -1.8876 13 6 2.1683 -6.4568 -1.5942 14 6 1.3507 -7.4016 -2.1945 15 6 0.3648 -6.9818 -3.0678 16 7 0.1948 -5.7002 -3.3272 17 6 0.9505 -4.7737 -2.7707 18 6 2.5161 -4.2317 1.1550 19 8 3.3868 -5.0793 1.1738 20 6 1.7991 -3.8794 2.4012 21 6 1.6261 -4.8372 3.4013 22 6 0.9590 -4.5090 4.5618 23 6 0.4561 -3.2191 4.7366 24 6 -0.2610 -2.8667 5.9828 25 7 -0.7463 -1.6208 6.1518 26 8 -0.4112 -3.7006 6.8540 27 6 0.6236 -2.2630 3.7338 28 6 1.2952 -2.5897 2.5756 29 1 -0.4850 0.8401 0.0004 30 1 0.6242 -2.5567 -0.8903 31 1 0.6248 -2.5570 0.8897 32 1 2.9004 -3.2051 -1.9362 33 1 3.8069 -4.4582 -1.0551 34 1 2.9496 -6.7557 -0.9111 35 1 1.4852 -8.4527 -1.9862 36 1 -0.2737 -7.7118 -3.5427 37 1 0.7816 -3.7337 -3.0080 38 1 2.0150 -5.8357 3.2660 39 1 0.8248 -5.2504 5.3357 40 1 -0.6261 -0.9550 5.4567 41 1 -1.2196 -1.3910 6.9668 42 1 0.2301 -1.2661 3.8670 43 1 1.4281 -1.8487 1.8011 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000345057889.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:21:43 Heat of formation + Delta-G solvation = -5.914697 kcal Electronic energy + Delta-G solvation = -28878.569630 eV Core-core repulsion = 24888.712283 eV Total energy + Delta-G solvation = -3989.857346 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 339.137 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -41.76199 -41.08004 -40.47781 -38.71737 -37.15891 -35.00156 -34.88067 -33.73144 -32.82674 -31.92270 -31.80184 -29.44944 -27.79428 -25.71630 -24.89322 -24.35616 -23.65958 -23.07287 -21.81063 -20.62587 -19.10508 -18.68567 -18.30186 -17.90129 -17.86026 -17.35811 -17.07541 -16.54097 -16.40328 -16.12959 -15.88401 -15.64606 -15.54739 -15.06669 -15.00581 -14.62596 -14.43703 -14.33735 -14.18208 -13.94196 -13.61375 -13.40885 -13.18227 -13.01272 -12.75717 -12.64847 -12.46763 -12.11451 -11.71089 -11.55472 -11.29825 -10.95957 -10.77209 -10.72232 -10.60335 -10.46343 -10.05940 -9.98756 -9.78252 -9.52741 -8.20625 -6.36303 -0.51066 0.11325 0.32469 0.38446 1.43270 1.44391 1.51573 1.59325 2.05066 2.21820 2.44112 2.48205 2.87343 2.93517 3.08389 3.53172 3.55982 3.83589 3.85126 3.88610 3.95227 4.01764 4.08923 4.10710 4.33715 4.43518 4.47038 4.66857 4.73686 4.75002 4.84796 4.87102 5.07110 5.18157 5.21416 5.25266 5.32735 5.36409 5.44552 5.64251 5.74860 5.77504 5.80725 5.88213 6.00397 6.32643 6.48003 6.78081 7.00928 7.17239 7.21489 7.36084 8.83293 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.007940 B = 0.004614 C = 0.003295 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3525.610599 B = 6067.650785 C = 8494.946810 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.901 5.901 2 C 0.040 3.960 3 Si 0.948 3.052 4 H -0.275 1.275 5 H -0.283 1.283 6 H -0.272 1.272 7 C -0.549 4.549 8 H 0.057 0.943 9 C 0.220 3.780 10 N -0.582 5.582 11 C 0.161 3.839 12 C -0.156 4.156 13 C -0.067 4.067 14 C -0.169 4.169 15 C 0.090 3.910 16 N -0.511 5.511 17 C 0.102 3.898 18 C 0.552 3.448 19 O -0.579 6.579 20 C -0.124 4.124 21 C -0.078 4.078 22 C -0.081 4.081 23 C -0.126 4.126 24 C 0.567 3.433 25 N -0.828 5.828 26 O -0.580 6.580 27 C -0.091 4.091 28 C -0.119 4.119 29 H 0.272 0.728 30 H 0.017 0.983 31 H 0.065 0.935 32 H 0.095 0.905 33 H 0.087 0.913 34 H 0.136 0.864 35 H 0.166 0.834 36 H 0.186 0.814 37 H 0.150 0.850 38 H 0.141 0.859 39 H 0.147 0.853 40 H 0.416 0.584 41 H 0.415 0.585 42 H 0.152 0.848 43 H 0.190 0.810 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.476 -5.444 2.241 5.906 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.538 5.538 2 C -0.164 4.164 3 Si 0.774 3.226 4 H -0.199 1.199 5 H -0.209 1.209 6 H -0.197 1.197 7 C -0.587 4.587 8 H 0.075 0.925 9 C 0.100 3.900 10 N -0.310 5.310 11 C 0.038 3.962 12 C -0.159 4.159 13 C -0.094 4.094 14 C -0.188 4.188 15 C -0.068 4.068 16 N -0.219 5.219 17 C -0.054 4.054 18 C 0.342 3.658 19 O -0.462 6.462 20 C -0.127 4.127 21 C -0.096 4.096 22 C -0.100 4.100 23 C -0.130 4.130 24 C 0.353 3.647 25 N -0.392 5.392 26 O -0.462 6.462 27 C -0.110 4.110 28 C -0.136 4.136 29 H 0.081 0.919 30 H 0.035 0.965 31 H 0.082 0.918 32 H 0.113 0.887 33 H 0.105 0.895 34 H 0.154 0.846 35 H 0.184 0.816 36 H 0.203 0.797 37 H 0.168 0.832 38 H 0.159 0.841 39 H 0.165 0.835 40 H 0.248 0.752 41 H 0.248 0.752 42 H 0.170 0.830 43 H 0.206 0.794 Dipole moment (debyes) X Y Z Total from point charges -0.873 -6.079 2.074 6.482 hybrid contribution 0.862 1.273 0.332 1.573 sum -0.011 -4.806 2.406 5.375 Atomic orbital electron populations 1.70011 1.06837 1.28467 1.48526 1.25494 0.95417 1.01591 0.93862 0.85656 0.78938 0.79995 0.78033 1.19936 1.20921 1.19669 1.21516 0.93584 0.90921 1.52665 0.92473 1.20110 0.88123 0.82570 0.99170 1.48084 1.44078 1.33123 1.05703 1.20208 0.95180 0.95761 0.85093 1.21261 0.99457 0.96017 0.99197 1.21779 0.98521 0.92324 0.96727 1.22468 0.96355 1.02009 0.97994 1.23344 0.96094 0.92443 0.94869 1.67718 1.26476 1.02978 1.24767 1.22738 0.90638 0.99283 0.92768 1.18600 0.82404 0.80673 0.84153 1.90629 1.33336 1.35541 1.86720 1.20220 1.01343 0.96006 0.95162 1.21213 0.97025 0.99519 0.91885 1.21213 0.95879 0.95827 0.97100 1.20176 1.02080 0.95726 0.95005 1.18307 0.77783 0.82794 0.85791 1.43600 1.58839 1.11966 1.24792 1.90763 1.60297 1.50271 1.44823 1.21486 0.97883 0.99664 0.91944 1.23293 0.93526 0.97685 0.99122 0.91874 0.96471 0.91786 0.88716 0.89503 0.84631 0.81609 0.79742 0.83219 0.84120 0.83506 0.75218 0.75176 0.83007 0.79417 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -43.08 13.29 21.45 0.28 -42.79 16 2 C 0.04 1.82 5.33 84.65 0.45 2.27 16 3 Si 0.95 37.14 29.54 68.60 2.03 39.17 16 4 H -0.27 -10.90 7.11 99.48 0.71 -10.19 16 5 H -0.28 -11.20 7.11 99.48 0.71 -10.49 16 6 H -0.27 -10.22 7.11 99.48 0.71 -9.51 16 7 C -0.55 -25.13 7.47 25.60 0.19 -24.94 16 8 H 0.06 2.71 7.81 -2.91 -0.02 2.68 16 9 C 0.22 9.53 4.64 85.63 0.40 9.93 16 10 N -0.58 -22.97 2.45 -833.71 -2.04 -25.01 16 11 C 0.16 5.58 5.61 85.63 0.48 6.06 16 12 C -0.16 -5.03 5.48 -19.77 -0.11 -5.14 16 13 C -0.07 -1.92 9.86 22.47 0.22 -1.70 16 14 C -0.17 -3.92 10.11 22.36 0.23 -3.70 16 15 C 0.09 2.20 11.18 84.69 0.95 3.15 16 16 N -0.51 -16.00 10.36 -195.84 -2.03 -18.03 16 17 C 0.10 3.36 10.86 84.67 0.92 4.28 16 18 C 0.55 22.22 7.46 86.84 0.65 22.87 16 19 O -0.58 -24.42 16.21 -3.79 -0.06 -24.48 16 20 C -0.12 -4.64 5.59 -20.04 -0.11 -4.75 16 21 C -0.08 -2.54 9.58 22.49 0.22 -2.32 16 22 C -0.08 -2.46 9.58 22.49 0.22 -2.25 16 23 C -0.13 -3.74 5.88 -20.05 -0.12 -3.86 16 24 C 0.57 15.69 8.05 86.84 0.70 16.39 16 25 N -0.83 -15.41 8.82 -175.48 -1.55 -16.96 16 26 O -0.58 -19.77 17.17 -3.80 -0.07 -19.83 16 27 C -0.09 -2.77 9.53 22.49 0.21 -2.55 16 28 C -0.12 -4.38 7.47 22.49 0.17 -4.21 16 29 H 0.27 12.32 8.31 -92.71 -0.77 11.55 16 30 H 0.02 0.80 8.13 -2.39 -0.02 0.78 16 31 H 0.07 2.87 4.08 -2.42 -0.01 2.86 16 32 H 0.09 3.22 8.02 -2.39 -0.02 3.20 16 33 H 0.09 2.97 7.30 -2.39 -0.02 2.96 16 34 H 0.14 3.89 8.02 -2.91 -0.02 3.87 16 35 H 0.17 2.62 8.06 -2.91 -0.02 2.60 16 36 H 0.19 3.12 8.06 -2.92 -0.02 3.09 16 37 H 0.15 4.97 8.06 -2.91 -0.02 4.95 16 38 H 0.14 4.27 7.91 -2.91 -0.02 4.25 16 39 H 0.15 4.07 7.64 -2.90 -0.02 4.05 16 40 H 0.42 6.16 6.85 -92.71 -0.64 5.52 16 41 H 0.42 6.02 8.93 -92.70 -0.83 5.19 16 42 H 0.15 3.72 6.39 -2.91 -0.02 3.70 16 43 H 0.19 7.83 2.99 -2.91 -0.01 7.82 16 Total: -1.00 -61.38 369.38 1.86 -59.52 By element: Atomic # 1 Polarization: 39.25 SS G_CDS: -0.37 Total: 38.88 kcal Atomic # 6 Polarization: 3.88 SS G_CDS: 5.66 Total: 9.54 kcal Atomic # 7 Polarization: -97.46 SS G_CDS: -5.33 Total: -102.79 kcal Atomic # 8 Polarization: -44.18 SS G_CDS: -0.13 Total: -44.31 kcal Atomic # 14 Polarization: 37.14 SS G_CDS: 2.03 Total: 39.17 kcal Total: -61.38 1.86 -59.52 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000345057889.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.606 kcal (2) G-P(sol) polarization free energy of solvation -61.376 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.770 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.855 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.520 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.915 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds