Wall clock time and date at job start Tue Mar 31 2020 23:22:08
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 S 1.81003 * 1
3 3 C 1.76198 * 99.99889 * 2 1
4 4 N 1.32551 * 119.19188 * 180.02562 * 3 2 1
5 5 C 1.32412 * 120.88322 * 179.97438 * 4 3 2
6 6 C 1.50697 * 120.36639 * 179.97438 * 5 4 3
7 7 C 1.38265 * 119.27144 * 0.02562 * 5 4 3
8 8 C 1.50697 * 120.74022 * 180.02562 * 7 5 4
9 9 C 1.52997 * 109.47466 * 89.99800 * 8 7 5
10 10 C 1.50701 * 109.47212 * 179.97438 * 9 8 7
11 11 O 1.21280 * 119.99781 * 0.02562 * 10 9 8
12 12 N 1.34780 * 119.99795 * 179.97438 * 10 9 8
13 13 C 1.46497 * 119.99566 * 180.02562 * 12 10 9
14 14 C 1.52997 * 109.46983 * 180.02562 * 13 12 10
15 15 C 1.53005 * 109.47452 * 179.97438 * 14 13 12
16 16 C 1.50695 * 109.47088 * 179.97438 * 15 14 13
17 17 H 1.08003 * 120.00531 * 359.97438 * 16 15 14
18 18 C 1.37876 * 119.99882 * 180.02562 * 16 15 14
19 19 N 1.31519 * 119.99989 * 359.97438 * 18 16 15
20 20 Si 1.86798 * 120.00260 * 180.02562 * 18 16 15
21 21 H 1.48502 * 109.47245 * 89.99518 * 20 18 16
22 22 H 1.48501 * 109.47507 * 209.99538 * 20 18 16
23 23 H 1.48499 * 109.47170 * 329.99678 * 20 18 16
24 24 C 1.39407 * 118.51584 * 0.27153 * 7 5 4
25 25 O 1.35522 * 120.45999 * 179.70824 * 24 7 5
26 26 N 1.32523 * 119.19445 * 359.97438 * 3 2 1
27 27 H 1.08995 * 109.47157 * 180.02562 * 1 2 3
28 28 H 1.09001 * 109.47175 * 299.99805 * 1 2 3
29 29 H 1.08992 * 109.47202 * 59.99847 * 1 2 3
30 30 H 1.09000 * 109.47470 * 270.02017 * 6 5 4
31 31 H 1.08997 * 109.47085 * 30.02842 * 6 5 4
32 32 H 1.09003 * 109.46917 * 150.01984 * 6 5 4
33 33 H 1.09002 * 109.47120 * 329.99553 * 8 7 5
34 34 H 1.08998 * 109.46862 * 210.00355 * 8 7 5
35 35 H 1.09002 * 109.47153 * 59.99773 * 9 8 7
36 36 H 1.09001 * 109.46832 * 299.99964 * 9 8 7
37 37 H 0.96995 * 120.00011 * 0.02562 * 12 10 9
38 38 H 1.09001 * 109.47487 * 300.00114 * 13 12 10
39 39 H 1.09002 * 109.47182 * 60.00342 * 13 12 10
40 40 H 1.09001 * 109.47289 * 299.99909 * 14 13 12
41 41 H 1.09002 * 109.47153 * 59.99993 * 14 13 12
42 42 H 1.08998 * 109.47061 * 300.00668 * 15 14 13
43 43 H 1.09002 * 109.46668 * 60.00355 * 15 14 13
44 44 H 0.96996 * 119.99885 * 180.02562 * 19 18 16
45 45 H 0.96700 * 113.99856 * 89.99950 * 25 24 7
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 16 1.8100 0.0000 0.0000
3 6 2.1160 1.7352 0.0000
4 7 3.3678 2.1710 -0.0005
5 6 3.6361 3.4676 -0.0010
6 6 5.0637 3.9502 -0.0010
7 6 2.5920 4.3740 -0.0005
8 6 2.8594 5.8571 -0.0017
9 6 2.9485 6.3582 -1.4445
10 6 3.2153 7.8414 -1.4456
11 8 3.3240 8.4387 -0.3957
12 7 3.3341 8.5039 -2.6133
13 6 3.5940 9.9456 -2.6143
14 6 3.6830 10.4467 -4.0571
15 6 3.9538 11.9526 -4.0583
16 6 4.0421 12.4460 -5.4795
17 1 3.9179 11.7547 -6.2999
18 6 4.2824 13.7799 -5.7324
19 7 4.4342 14.6217 -4.7334
20 14 4.3911 14.3918 -7.4940
21 1 3.0420 14.8023 -7.9596
22 1 5.3120 15.5549 -7.5582
23 1 4.9055 13.3045 -8.3648
24 6 1.2864 3.8853 0.0064
25 8 0.2335 4.7385 0.0131
26 7 1.0889 2.5727 -0.0005
27 1 -0.3633 -1.0276 0.0005
28 1 -0.3633 0.5138 0.8900
29 1 -0.3633 0.5138 -0.8899
30 1 5.4079 4.0667 1.0266
31 1 5.6929 3.2235 -0.5149
32 1 5.1229 4.9096 -0.5150
33 1 3.8002 6.0570 0.5112
34 1 2.0486 6.3728 0.5127
35 1 2.0077 6.1583 -1.9573
36 1 3.7594 5.8424 -1.9588
37 1 3.2476 8.0260 -3.4529
38 1 2.7830 10.4614 -2.1003
39 1 4.5347 10.1456 -2.1012
40 1 4.4939 9.9310 -4.5716
41 1 2.7421 10.2468 -4.5699
42 1 3.1427 12.4680 -3.5440
43 1 4.8946 12.1529 -3.5455
44 1 4.6029 15.5602 -4.9114
45 1 -0.0770 4.9870 -0.8684
RHF calculation, no. of doubly occupied orbitals= 61
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990)
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000349297519.mol2 45
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 23:22:08
Heat of formation + Delta-G solvation = -59.286980 kcal
Electronic energy + Delta-G solvation = -25736.589973 eV
Core-core repulsion = 21879.862182 eV
Total energy + Delta-G solvation = -3856.727791 eV
No. of doubly occupied orbitals = 61
Molecular weight
(most abundant/longest-lived isotopes) = 339.140 amu
Computer time = 0.63 seconds
Orbital eigenvalues (eV)
-41.70437 -39.63003 -38.13503 -35.90068 -35.31418 -33.65842 -33.36112 -31.52980
-30.75717 -29.68275 -28.73592 -27.07080 -25.64574 -23.45136 -23.22624 -22.22744
-20.79133 -19.90634 -19.53623 -18.64528 -17.66447 -17.18531 -16.48737 -16.18338
-15.85636 -15.47239 -15.25706 -14.82266 -14.60610 -14.53938 -14.48797 -14.05102
-14.01957 -13.43505 -13.34783 -13.19188 -13.08979 -12.82562 -12.65059 -12.34804
-12.32008 -11.87421 -11.77281 -11.46850 -11.42167 -10.93903 -10.82422 -10.79177
-10.76052 -10.63464 -10.17824 -9.92404 -9.92098 -9.78113 -9.41875 -9.15880
-8.86206 -8.40971 -8.21291 -6.05534 -4.08915 0.21920 0.48402 0.74422
1.62545 2.66744 2.85223 3.10882 3.27883 3.30078 3.34725 3.37435
3.70929 4.11718 4.32787 4.37545 4.41305 4.61166 4.68254 4.74133
4.74728 4.87620 4.97309 5.13037 5.17323 5.27458 5.30275 5.35168
5.40673 5.63709 5.66981 5.68144 5.72122 5.93712 6.09922 6.38895
6.40884 6.53555 6.76171 6.87788 6.94634 7.37835 7.58936 7.61217
7.71127 7.92793 8.28588 8.34403 8.97698 9.55520 11.05656
Molecular weight = 339.14amu
Principal moments of inertia in cm(-1)
A = 0.024827 B = 0.001590 C = 0.001577
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1127.539811 B =17603.719197 C =17746.420976
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.145 4.145
2 S 0.007 5.993
3 C 0.316 3.684
4 N -0.506 5.506
5 C 0.207 3.793
6 C -0.113 4.113
7 C -0.208 4.208
8 C -0.054 4.054
9 C -0.136 4.136
10 C 0.507 3.493
11 O -0.542 6.542
12 N -0.726 5.726
13 C 0.115 3.885
14 C -0.121 4.121
15 C 0.023 3.977
16 C -0.524 4.524
17 H 0.055 0.945
18 C 0.057 3.943
19 N -0.893 5.893
20 Si 0.893 3.107
21 H -0.280 1.280
22 H -0.286 1.286
23 H -0.274 1.274
24 C 0.380 3.620
25 O -0.469 6.469
26 N -0.549 5.549
27 H 0.107 0.893
28 H 0.091 0.909
29 H 0.091 0.909
30 H 0.092 0.908
31 H 0.087 0.913
32 H 0.088 0.912
33 H 0.091 0.909
34 H 0.093 0.907
35 H 0.088 0.912
36 H 0.093 0.907
37 H 0.398 0.602
38 H 0.064 0.936
39 H 0.064 0.936
40 H 0.054 0.946
41 H 0.054 0.946
42 H 0.019 0.981
43 H 0.019 0.981
44 H 0.261 0.739
45 H 0.409 0.591
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -6.019 -30.112 9.170 32.048
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.314 4.314
2 S 0.240 5.760
3 C -0.060 4.060
4 N -0.225 5.225
5 C 0.060 3.940
6 C -0.170 4.170
7 C -0.217 4.217
8 C -0.093 4.093
9 C -0.176 4.176
10 C 0.292 3.708
11 O -0.419 6.419
12 N -0.377 5.377
13 C -0.007 4.007
14 C -0.159 4.159
15 C -0.014 4.014
16 C -0.562 4.562
17 H 0.073 0.927
18 C -0.144 4.144
19 N -0.532 5.532
20 Si 0.721 3.279
21 H -0.207 1.207
22 H -0.212 1.212
23 H -0.199 1.199
24 C 0.190 3.810
25 O -0.276 6.276
26 N -0.278 5.278
27 H 0.125 0.875
28 H 0.110 0.890
29 H 0.110 0.890
30 H 0.110 0.890
31 H 0.106 0.894
32 H 0.107 0.893
33 H 0.109 0.891
34 H 0.112 0.888
35 H 0.107 0.893
36 H 0.112 0.888
37 H 0.232 0.768
38 H 0.083 0.917
39 H 0.083 0.917
40 H 0.073 0.927
41 H 0.072 0.928
42 H 0.037 0.963
43 H 0.037 0.963
44 H 0.071 0.929
45 H 0.268 0.732
Dipole moment (debyes) X Y Z Total
from point charges -5.360 -31.430 10.557 33.586
hybrid contribution -0.979 2.286 -1.878 3.116
sum -6.339 -29.144 8.679 31.062
Atomic orbital electron populations
1.23583 0.94001 1.06448 1.07372 1.85898 1.06907 0.92821 1.90325
1.24701 0.86180 1.00179 0.94934 1.68363 1.20729 1.16500 1.16909
1.21637 0.97018 0.87274 0.88118 1.20913 0.89174 1.02461 1.04422
1.21560 0.93212 0.99221 1.07664 1.20155 1.05266 0.87792 0.96105
1.21643 1.03981 0.93438 0.98554 1.20485 0.76998 0.89165 0.84104
1.90724 1.50211 1.69699 1.31293 1.46243 1.72542 1.10780 1.08132
1.21659 1.01260 0.78037 0.99757 1.21890 1.00845 1.00896 0.92254
1.19034 0.97357 0.87680 0.97364 1.21196 1.49215 0.93503 0.92291
0.92659 1.25031 0.95286 0.97025 0.97104 1.69963 1.48939 1.03596
1.30690 0.86578 0.77928 0.78445 0.84937 1.20656 1.21176 1.19911
1.19216 0.86092 0.85803 0.89868 1.84722 1.47817 1.60773 1.34326
1.68261 1.35949 1.04070 1.19512 0.87458 0.89023 0.89041 0.88966
0.89384 0.89336 0.89086 0.88814 0.89319 0.88822 0.76820 0.91743
0.91715 0.92728 0.92764 0.96271 0.96254 0.92899 0.73152
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 13.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.14 -0.80 9.62 101.05 0.97 0.17 16
2 S 0.01 0.06 22.89 -107.50 -2.46 -2.41 16
3 C 0.32 3.35 7.85 -90.87 -0.71 2.63 16
4 N -0.51 -5.50 10.33 -9.74 -0.10 -5.61 16
5 C 0.21 1.92 6.82 -82.33 -0.56 1.36 16
6 C -0.11 -0.74 9.44 36.00 0.34 -0.40 16
7 C -0.21 -1.87 5.18 -104.18 -0.54 -2.41 16
8 C -0.05 -0.48 3.78 -27.89 -0.11 -0.58 16
9 C -0.14 -1.08 5.57 -27.88 -0.16 -1.23 16
10 C 0.51 6.34 7.83 -10.98 -0.09 6.25 16
11 O -0.54 -9.09 15.98 5.56 0.09 -9.00 16
12 N -0.73 -9.15 5.56 -60.30 -0.33 -9.49 16
13 C 0.12 1.91 5.67 -4.04 -0.02 1.89 16
14 C -0.12 -2.26 5.27 -26.73 -0.14 -2.40 16
15 C 0.02 0.58 4.97 -27.88 -0.14 0.44 16
16 C -0.52 -14.37 9.11 -34.44 -0.31 -14.69 16
17 H 0.06 1.46 7.74 -52.48 -0.41 1.05 16
18 C 0.06 1.61 5.46 -17.82 -0.10 1.51 16
19 N -0.89 -26.45 13.29 55.43 0.74 -25.71 16
20 Si 0.89 21.19 29.54 -169.99 -5.02 16.17 16
21 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16
22 H -0.29 -6.74 7.11 56.52 0.40 -6.34 16
23 H -0.27 -6.34 7.11 56.52 0.40 -5.94 16
24 C 0.38 3.68 7.80 -16.72 -0.13 3.55 16
25 O -0.47 -3.82 12.74 -18.26 -0.23 -4.05 16
26 N -0.55 -5.75 9.16 -13.50 -0.12 -5.88 16
27 H 0.11 0.34 8.14 -51.92 -0.42 -0.08 16
28 H 0.09 0.57 8.11 -51.92 -0.42 0.15 16
29 H 0.09 0.53 8.11 -51.92 -0.42 0.10 16
30 H 0.09 0.53 8.14 -51.93 -0.42 0.11 16
31 H 0.09 0.53 8.14 -51.93 -0.42 0.11 16
32 H 0.09 0.50 6.03 -51.93 -0.31 0.19 16
33 H 0.09 0.82 6.76 -51.93 -0.35 0.47 16
34 H 0.09 0.95 7.57 -51.93 -0.39 0.56 16
35 H 0.09 0.52 8.14 -51.93 -0.42 0.10 16
36 H 0.09 0.59 7.47 -51.93 -0.39 0.20 16
37 H 0.40 3.87 8.47 -40.82 -0.35 3.53 16
38 H 0.06 1.15 8.14 -51.93 -0.42 0.72 16
39 H 0.06 1.15 8.14 -51.93 -0.42 0.72 16
40 H 0.05 0.98 8.14 -51.93 -0.42 0.55 16
41 H 0.05 0.97 8.14 -51.93 -0.42 0.55 16
42 H 0.02 0.50 8.14 -51.93 -0.42 0.08 16
43 H 0.02 0.51 8.14 -51.93 -0.42 0.08 16
44 H 0.26 7.31 8.31 -40.82 -0.34 6.97 16
45 H 0.41 1.40 9.06 45.56 0.41 1.81 16
LS Contribution 394.24 15.07 5.94 5.94
Total: -1.00 -35.21 394.24 -9.19 -44.40
By element:
Atomic # 1 Polarization: 5.52 SS G_CDS: -5.99 Total: -0.47 kcal
Atomic # 6 Polarization: -2.22 SS G_CDS: -1.69 Total: -3.91 kcal
Atomic # 7 Polarization: -46.86 SS G_CDS: 0.18 Total: -46.68 kcal
Atomic # 8 Polarization: -12.91 SS G_CDS: -0.14 Total: -13.05 kcal
Atomic # 14 Polarization: 21.19 SS G_CDS: -5.02 Total: 16.17 kcal
Atomic # 16 Polarization: 0.06 SS G_CDS: -2.46 Total: -2.41 kcal
Total LS contribution 5.94 Total: 5.94 kcal
Total: -35.21 -9.19 -44.40 kcal
The number of atoms in the molecule is 45
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000349297519.mol2 45
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -14.884 kcal
(2) G-P(sol) polarization free energy of solvation -35.213 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.097 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.190 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.403 kcal
(6) G-S(sol) free energy of system = (1) + (5) -59.287 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.63 seconds