Wall clock time and date at job start Tue Mar 31 2020 23:22:08
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 S 1.81003 * 1
3 3 C 1.76198 * 99.99889 * 2 1
4 4 N 1.32551 * 119.19188 * 180.02562 * 3 2 1
5 5 C 1.32412 * 120.88322 * 179.97438 * 4 3 2
6 6 C 1.50697 * 120.36639 * 179.97438 * 5 4 3
7 7 C 1.38265 * 119.27144 * 0.02562 * 5 4 3
8 8 C 1.50697 * 120.74022 * 180.02562 * 7 5 4
9 9 C 1.52997 * 109.47466 * 89.99800 * 8 7 5
10 10 C 1.50701 * 109.47212 * 179.97438 * 9 8 7
11 11 O 1.21280 * 119.99781 * 0.02562 * 10 9 8
12 12 N 1.34780 * 119.99795 * 179.97438 * 10 9 8
13 13 C 1.46497 * 119.99566 * 180.02562 * 12 10 9
14 14 C 1.52997 * 109.46983 * 180.02562 * 13 12 10
15 15 C 1.53005 * 109.47452 * 179.97438 * 14 13 12
16 16 C 1.50695 * 109.47088 * 179.97438 * 15 14 13
17 17 H 1.08003 * 120.00531 * 359.97438 * 16 15 14
18 18 C 1.37876 * 119.99882 * 180.02562 * 16 15 14
19 19 N 1.31519 * 119.99989 * 359.97438 * 18 16 15
20 20 Si 1.86798 * 120.00260 * 180.02562 * 18 16 15
21 21 H 1.48502 * 109.47245 * 89.99518 * 20 18 16
22 22 H 1.48501 * 109.47507 * 209.99538 * 20 18 16
23 23 H 1.48499 * 109.47170 * 329.99678 * 20 18 16
24 24 C 1.39407 * 118.51584 * 0.27153 * 7 5 4
25 25 O 1.35522 * 120.45999 * 179.70824 * 24 7 5
26 26 N 1.32523 * 119.19445 * 359.97438 * 3 2 1
27 27 H 1.08995 * 109.47157 * 180.02562 * 1 2 3
28 28 H 1.09001 * 109.47175 * 299.99805 * 1 2 3
29 29 H 1.08992 * 109.47202 * 59.99847 * 1 2 3
30 30 H 1.09000 * 109.47470 * 270.02017 * 6 5 4
31 31 H 1.08997 * 109.47085 * 30.02842 * 6 5 4
32 32 H 1.09003 * 109.46917 * 150.01984 * 6 5 4
33 33 H 1.09002 * 109.47120 * 329.99553 * 8 7 5
34 34 H 1.08998 * 109.46862 * 210.00355 * 8 7 5
35 35 H 1.09002 * 109.47153 * 59.99773 * 9 8 7
36 36 H 1.09001 * 109.46832 * 299.99964 * 9 8 7
37 37 H 0.96995 * 120.00011 * 0.02562 * 12 10 9
38 38 H 1.09001 * 109.47487 * 300.00114 * 13 12 10
39 39 H 1.09002 * 109.47182 * 60.00342 * 13 12 10
40 40 H 1.09001 * 109.47289 * 299.99909 * 14 13 12
41 41 H 1.09002 * 109.47153 * 59.99993 * 14 13 12
42 42 H 1.08998 * 109.47061 * 300.00668 * 15 14 13
43 43 H 1.09002 * 109.46668 * 60.00355 * 15 14 13
44 44 H 0.96996 * 119.99885 * 180.02562 * 19 18 16
45 45 H 0.96700 * 113.99856 * 89.99950 * 25 24 7
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 16 1.8100 0.0000 0.0000
3 6 2.1160 1.7352 0.0000
4 7 3.3678 2.1710 -0.0005
5 6 3.6361 3.4676 -0.0010
6 6 5.0637 3.9502 -0.0010
7 6 2.5920 4.3740 -0.0005
8 6 2.8594 5.8571 -0.0017
9 6 2.9485 6.3582 -1.4445
10 6 3.2153 7.8414 -1.4456
11 8 3.3240 8.4387 -0.3957
12 7 3.3341 8.5039 -2.6133
13 6 3.5940 9.9456 -2.6143
14 6 3.6830 10.4467 -4.0571
15 6 3.9538 11.9526 -4.0583
16 6 4.0421 12.4460 -5.4795
17 1 3.9179 11.7547 -6.2999
18 6 4.2824 13.7799 -5.7324
19 7 4.4342 14.6217 -4.7334
20 14 4.3911 14.3918 -7.4940
21 1 3.0420 14.8023 -7.9596
22 1 5.3120 15.5549 -7.5582
23 1 4.9055 13.3045 -8.3648
24 6 1.2864 3.8853 0.0064
25 8 0.2335 4.7385 0.0131
26 7 1.0889 2.5727 -0.0005
27 1 -0.3633 -1.0276 0.0005
28 1 -0.3633 0.5138 0.8900
29 1 -0.3633 0.5138 -0.8899
30 1 5.4079 4.0667 1.0266
31 1 5.6929 3.2235 -0.5149
32 1 5.1229 4.9096 -0.5150
33 1 3.8002 6.0570 0.5112
34 1 2.0486 6.3728 0.5127
35 1 2.0077 6.1583 -1.9573
36 1 3.7594 5.8424 -1.9588
37 1 3.2476 8.0260 -3.4529
38 1 2.7830 10.4614 -2.1003
39 1 4.5347 10.1456 -2.1012
40 1 4.4939 9.9310 -4.5716
41 1 2.7421 10.2468 -4.5699
42 1 3.1427 12.4680 -3.5440
43 1 4.8946 12.1529 -3.5455
44 1 4.6029 15.5602 -4.9114
45 1 -0.0770 4.9870 -0.8684
RHF calculation, no. of doubly occupied orbitals= 61
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990)
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000349297519.mol2 45
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 23:22:08
Heat of formation + Delta-G solvation = -86.051921 kcal
Electronic energy + Delta-G solvation = -25737.750588 eV
Core-core repulsion = 21879.862182 eV
Total energy + Delta-G solvation = -3857.888406 eV
No. of doubly occupied orbitals = 61
Molecular weight
(most abundant/longest-lived isotopes) = 339.140 amu
Computer time = 0.63 seconds
Orbital eigenvalues (eV)
-42.38827 -40.69618 -38.77101 -37.07344 -36.29288 -35.16961 -34.36660 -33.07702
-31.66343 -30.17944 -29.39412 -28.56974 -26.65916 -24.88802 -23.96981 -23.17690
-22.28943 -21.07863 -20.18049 -19.31780 -18.56036 -18.29362 -18.08971 -16.98050
-16.86515 -16.68830 -16.39338 -16.00277 -15.76091 -15.52843 -15.26924 -14.68928
-14.61234 -14.47903 -14.25758 -14.14209 -13.77675 -13.76880 -13.62451 -13.44545
-13.35317 -13.29906 -12.89813 -12.74099 -12.54031 -12.36671 -12.13261 -12.05666
-11.66015 -11.58132 -11.50726 -11.42203 -11.23557 -10.91854 -10.65587 -10.55113
-10.48546 -10.05184 -8.83814 -8.19313 -6.30779 -0.47922 -0.18748 0.12363
1.10795 1.42135 1.43123 1.54068 1.68075 2.17426 2.28607 2.42671
2.46738 3.09824 3.14554 3.44315 3.56257 3.70676 3.90129 4.12939
4.14605 4.22931 4.29371 4.29838 4.31314 4.35649 4.56379 4.57599
4.66021 4.73427 4.84155 4.93594 4.95837 5.01194 5.03329 5.05769
5.18426 5.32528 5.47353 5.54953 5.71373 5.71716 5.84859 6.22552
6.42337 6.62785 6.68778 6.87161 7.31513 7.39016 8.92592
Molecular weight = 339.14amu
Principal moments of inertia in cm(-1)
A = 0.024827 B = 0.001590 C = 0.001577
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1127.539811 B =17603.719197 C =17746.420976
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.136 4.136
2 S 0.000 6.000
3 C 0.300 3.700
4 N -0.527 5.527
5 C 0.202 3.798
6 C -0.111 4.111
7 C -0.206 4.206
8 C -0.046 4.046
9 C -0.123 4.123
10 C 0.507 3.493
11 O -0.588 6.588
12 N -0.716 5.716
13 C 0.129 3.871
14 C -0.102 4.102
15 C 0.022 3.978
16 C -0.541 4.541
17 H 0.067 0.933
18 C -0.003 4.003
19 N -0.934 5.934
20 Si 0.966 3.034
21 H -0.273 1.273
22 H -0.285 1.285
23 H -0.260 1.260
24 C 0.375 3.625
25 O -0.476 6.476
26 N -0.561 5.561
27 H 0.134 0.866
28 H 0.084 0.916
29 H 0.090 0.910
30 H 0.099 0.901
31 H 0.093 0.907
32 H 0.099 0.901
33 H 0.087 0.913
34 H 0.077 0.923
35 H 0.117 0.883
36 H 0.120 0.880
37 H 0.416 0.584
38 H 0.047 0.953
39 H 0.048 0.952
40 H 0.068 0.932
41 H 0.068 0.932
42 H -0.009 1.009
43 H -0.008 1.008
44 H 0.263 0.737
45 H 0.427 0.573
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -6.442 -31.938 7.390 33.408
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.305 4.305
2 S 0.233 5.767
3 C -0.075 4.075
4 N -0.247 5.247
5 C 0.055 3.945
6 C -0.168 4.168
7 C -0.216 4.216
8 C -0.085 4.085
9 C -0.162 4.162
10 C 0.295 3.705
11 O -0.469 6.469
12 N -0.368 5.368
13 C 0.005 3.995
14 C -0.140 4.140
15 C -0.016 4.016
16 C -0.579 4.579
17 H 0.085 0.915
18 C -0.201 4.201
19 N -0.575 5.575
20 Si 0.791 3.209
21 H -0.199 1.199
22 H -0.211 1.211
23 H -0.184 1.184
24 C 0.186 3.814
25 O -0.287 6.287
26 N -0.290 5.290
27 H 0.152 0.848
28 H 0.103 0.897
29 H 0.109 0.891
30 H 0.117 0.883
31 H 0.112 0.888
32 H 0.118 0.882
33 H 0.106 0.894
34 H 0.096 0.904
35 H 0.136 0.864
36 H 0.138 0.862
37 H 0.253 0.747
38 H 0.066 0.934
39 H 0.067 0.933
40 H 0.087 0.913
41 H 0.086 0.914
42 H 0.010 0.990
43 H 0.010 0.990
44 H 0.071 0.929
45 H 0.291 0.709
Dipole moment (debyes) X Y Z Total
from point charges -5.800 -33.293 8.734 34.904
hybrid contribution -0.894 2.832 -1.263 3.228
sum -6.694 -30.460 7.470 32.069
Atomic orbital electron populations
1.23634 0.91862 1.08018 1.06952 1.85875 1.09262 0.91662 1.89889
1.25105 0.86307 1.01184 0.94888 1.68426 1.20983 1.17313 1.17935
1.22048 0.98191 0.86943 0.87324 1.21000 0.87735 1.03002 1.05086
1.21495 0.93005 0.99019 1.08036 1.20023 1.04469 0.87469 0.96510
1.21627 1.06446 0.89554 0.98598 1.21249 0.75428 0.90822 0.82973
1.90715 1.52149 1.71072 1.32939 1.46014 1.72362 1.09000 1.09436
1.21194 0.99907 0.80542 0.97882 1.21591 1.01934 0.96589 0.93853
1.18962 0.94938 0.91869 0.95843 1.21693 1.48585 0.94042 0.93597
0.91506 1.26019 0.94899 0.97434 1.01756 1.70112 1.50154 1.03955
1.33251 0.85425 0.78110 0.77985 0.79380 1.19881 1.21118 1.18413
1.19396 0.86664 0.85868 0.89507 1.84690 1.47491 1.60396 1.36134
1.68299 1.35997 1.04442 1.20285 0.84832 0.89669 0.89101 0.88295
0.88849 0.88227 0.89446 0.90399 0.86442 0.86171 0.74676 0.93449
0.93314 0.91329 0.91380 0.99038 0.98980 0.92860 0.70922
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 13.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.14 -1.32 9.62 113.37 1.09 -0.23 16
2 S 0.00 -0.01 22.89 -56.49 -1.29 -1.30 16
3 C 0.30 6.16 7.85 180.44 1.42 7.57 16
4 N -0.53 -11.04 10.33 -184.71 -1.91 -12.95 16
5 C 0.20 3.48 6.82 42.48 0.29 3.77 16
6 C -0.11 -1.27 9.44 71.23 0.67 -0.60 16
7 C -0.21 -3.42 5.18 -19.58 -0.10 -3.53 16
8 C -0.05 -0.73 3.78 29.85 0.11 -0.62 16
9 C -0.12 -1.59 5.57 29.85 0.17 -1.42 16
10 C 0.51 11.83 7.83 87.66 0.69 12.52 16
11 O -0.59 -19.61 15.98 -3.03 -0.05 -19.65 16
12 N -0.72 -16.64 5.56 -463.06 -2.57 -19.21 16
13 C 0.13 4.24 5.67 86.38 0.49 4.73 16
14 C -0.10 -3.71 5.27 30.60 0.16 -3.55 16
15 C 0.02 1.10 4.97 29.85 0.15 1.24 16
16 C -0.54 -29.63 9.11 25.60 0.23 -29.40 16
17 H 0.07 3.42 7.74 -2.91 -0.02 3.40 16
18 C 0.00 -0.19 5.46 84.65 0.46 0.27 16
19 N -0.93 -56.45 13.29 21.45 0.28 -56.17 16
20 Si 0.97 43.13 29.54 68.60 2.03 45.16 16
21 H -0.27 -11.81 7.11 99.48 0.71 -11.10 16
22 H -0.29 -12.62 7.11 99.48 0.71 -11.91 16
23 H -0.26 -10.92 7.11 99.48 0.71 -10.22 16
24 C 0.38 6.81 7.80 84.84 0.66 7.47 16
25 O -0.48 -7.09 12.74 -88.26 -1.12 -8.21 16
26 N -0.56 -11.25 9.16 -309.32 -2.83 -14.08 16
27 H 0.13 0.56 8.14 -2.40 -0.02 0.54 16
28 H 0.08 0.97 8.11 -2.39 -0.02 0.95 16
29 H 0.09 0.92 8.11 -2.40 -0.02 0.90 16
30 H 0.10 1.01 8.14 -2.39 -0.02 0.99 16
31 H 0.09 0.97 8.14 -2.39 -0.02 0.95 16
32 H 0.10 0.90 6.03 -2.39 -0.01 0.88 16
33 H 0.09 1.47 6.76 -2.39 -0.02 1.45 16
34 H 0.08 1.52 7.57 -2.39 -0.02 1.51 16
35 H 0.12 0.92 8.14 -2.39 -0.02 0.90 16
36 H 0.12 1.02 7.47 -2.39 -0.02 1.00 16
37 H 0.42 6.73 8.47 -92.71 -0.79 5.95 16
38 H 0.05 1.72 8.14 -2.39 -0.02 1.70 16
39 H 0.05 1.76 8.14 -2.39 -0.02 1.74 16
40 H 0.07 2.32 8.14 -2.39 -0.02 2.30 16
41 H 0.07 2.30 8.14 -2.39 -0.02 2.28 16
42 H -0.01 -0.49 8.14 -2.39 -0.02 -0.51 16
43 H -0.01 -0.46 8.14 -2.39 -0.02 -0.48 16
44 H 0.26 14.95 8.31 -92.71 -0.77 14.18 16
45 H 0.43 2.09 9.06 -74.06 -0.67 1.42 16
Total: -1.00 -77.94 394.24 -1.41 -79.35
By element:
Atomic # 1 Polarization: 9.26 SS G_CDS: -0.43 Total: 8.83 kcal
Atomic # 6 Polarization: -8.25 SS G_CDS: 6.49 Total: -1.76 kcal
Atomic # 7 Polarization: -95.38 SS G_CDS: -7.03 Total: -102.41 kcal
Atomic # 8 Polarization: -26.69 SS G_CDS: -1.17 Total: -27.86 kcal
Atomic # 14 Polarization: 43.13 SS G_CDS: 2.03 Total: 45.16 kcal
Atomic # 16 Polarization: -0.01 SS G_CDS: -1.29 Total: -1.30 kcal
Total: -77.94 -1.41 -79.35 kcal
The number of atoms in the molecule is 45
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000349297519.mol2 45
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -6.703 kcal
(2) G-P(sol) polarization free energy of solvation -77.941 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.645 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.407 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.349 kcal
(6) G-S(sol) free energy of system = (1) + (5) -86.052 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.63 seconds