Wall clock time and date at job start Tue Mar 31 2020 22:18:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86792 * 119.99649 * 2 1 4 4 H 1.48504 * 109.46936 * 179.97438 * 3 2 1 5 5 H 1.48497 * 109.47433 * 299.99707 * 3 2 1 6 6 H 1.48503 * 109.47403 * 60.00189 * 3 2 1 7 7 C 1.38813 * 119.99921 * 179.97438 * 2 1 3 8 8 H 1.07995 * 119.99868 * 163.07053 * 7 2 1 9 9 N 1.36934 * 119.99778 * 343.06736 * 7 2 1 10 10 C 1.46924 * 120.63521 * 331.85502 * 9 7 2 11 11 C 1.53197 * 108.77377 * 233.58287 * 10 9 7 12 12 C 1.53034 * 109.31577 * 305.36717 * 11 10 9 13 13 C 1.52999 * 109.46141 * 181.38708 * 12 11 10 14 14 N 1.46497 * 109.47098 * 174.97172 * 13 12 11 15 15 S 1.65605 * 119.99842 * 164.99808 * 14 13 12 16 16 O 1.42098 * 106.40133 * 311.45575 * 15 14 13 17 17 O 1.42101 * 106.39944 * 178.53694 * 15 14 13 18 18 C 1.76196 * 107.22001 * 64.99980 * 15 14 13 19 19 C 1.38289 * 119.92570 * 89.99670 * 18 15 14 20 20 C 1.38105 * 120.07389 * 180.02562 * 19 18 15 21 21 C 1.38914 * 119.92510 * 359.97438 * 20 19 18 22 22 N 1.39672 * 120.07735 * 179.97438 * 21 20 19 23 23 C 1.38911 * 119.85023 * 0.25751 * 21 20 19 24 24 C 1.38100 * 119.92546 * 359.49259 * 23 21 20 25 25 C 1.53042 * 109.53002 * 61.36967 * 12 11 10 26 26 C 1.46934 * 120.62658 * 151.82635 * 9 7 2 27 27 H 0.97003 * 120.00443 * 0.02562 * 1 2 3 28 28 H 1.08996 * 109.58689 * 113.79823 * 10 9 7 29 29 H 1.08996 * 109.70181 * 353.44161 * 10 9 7 30 30 H 1.09003 * 109.49738 * 185.40687 * 11 10 9 31 31 H 1.09010 * 109.49363 * 65.31450 * 11 10 9 32 32 H 1.08999 * 109.45806 * 301.35423 * 12 11 10 33 33 H 1.08997 * 109.47355 * 54.96757 * 13 12 11 34 34 H 1.09006 * 109.46865 * 294.97021 * 13 12 11 35 35 H 0.96999 * 120.00488 * 344.99446 * 14 13 12 36 36 H 1.07997 * 119.96543 * 0.04623 * 19 18 15 37 37 H 1.08003 * 120.04148 * 179.97438 * 20 19 18 38 38 H 0.97008 * 119.99406 * 359.97438 * 22 21 20 39 39 H 0.96997 * 120.00560 * 179.72631 * 22 21 20 40 40 H 1.08003 * 120.03863 * 179.72527 * 23 21 20 41 41 H 1.08000 * 119.96809 * 180.25598 * 24 23 21 42 42 H 1.08996 * 109.49884 * 58.58078 * 25 12 11 43 43 H 1.08991 * 109.49686 * 178.68095 * 25 12 11 44 44 H 1.08992 * 109.58804 * 246.20371 * 26 9 7 45 45 H 1.08996 * 109.58219 * 6.48969 * 26 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6177 0.0000 4 1 3.7101 1.3464 0.0006 5 1 1.8914 2.3964 -1.2125 6 1 1.8913 2.3965 1.2125 7 6 2.0103 -1.2022 0.0005 8 1 3.0551 -1.2225 -0.2718 9 7 1.3701 -2.3622 0.3464 10 6 0.2260 -2.3397 1.2681 11 6 0.4974 -3.3187 2.4147 12 6 0.8120 -4.7004 1.8369 13 6 1.0496 -5.6890 2.9801 14 7 1.2320 -7.0352 2.4317 15 16 1.8679 -8.2359 3.3785 16 8 3.0323 -7.6934 3.9861 17 8 1.8838 -9.4109 2.5795 18 6 0.7204 -8.5357 4.6814 19 6 -0.2797 -9.4766 4.5170 20 6 -1.1812 -9.7136 5.5361 21 6 -1.0822 -9.0061 6.7274 22 7 -1.9925 -9.2429 7.7599 23 6 -0.0794 -8.0582 6.8874 24 6 0.8219 -7.8298 5.8663 25 6 2.0676 -4.6169 0.9658 26 6 1.8138 -3.6529 -0.1976 27 1 -0.4851 0.8400 -0.0004 28 1 -0.6770 -2.6404 0.7369 29 1 0.0966 -1.3344 1.6688 30 1 -0.3832 -3.3835 3.0539 31 1 1.3472 -2.9670 2.9999 32 1 -0.0281 -5.0407 1.2314 33 1 0.1900 -5.6831 3.6502 34 1 1.9430 -5.3977 3.5326 35 1 0.9803 -7.2233 1.5140 36 1 -0.3557 -10.0268 3.5909 37 1 -1.9622 -10.4483 5.4070 38 1 -2.6951 -9.9019 7.6453 39 1 -1.9200 -8.7511 8.5928 40 1 -0.0023 -7.5032 7.8107 41 1 1.6044 -7.0960 5.9915 42 1 2.9023 -4.2529 1.5647 43 1 2.3046 -5.6057 0.5735 44 1 1.0402 -4.0606 -0.8482 45 1 2.7332 -3.5131 -0.7661 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000351899647.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:18:16 Heat of formation + Delta-G solvation = -36.992907 kcal Electronic energy + Delta-G solvation = -27294.601966 eV Core-core repulsion = 23438.840918 eV Total energy + Delta-G solvation = -3855.761047 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -39.66767 -38.11311 -37.16259 -35.80692 -35.22575 -35.04261 -32.62214 -31.31653 -30.60343 -29.59293 -29.28559 -26.45944 -23.86990 -23.28893 -22.88320 -22.09306 -21.10316 -19.64996 -19.03181 -18.16325 -17.52953 -17.40646 -17.03931 -16.59665 -16.00270 -14.98188 -14.81673 -14.68322 -14.44350 -14.20399 -13.86000 -13.75589 -13.74221 -13.45986 -13.32980 -13.11159 -12.73232 -12.33569 -12.12088 -12.02901 -11.97334 -11.74266 -11.49333 -11.39714 -11.29564 -10.96778 -10.94155 -10.70044 -10.45230 -10.18336 -10.15735 -9.85838 -9.61055 -9.40971 -9.37361 -9.27542 -8.44081 -8.28809 -6.62578 -5.75850 -3.17684 0.43582 0.81469 1.06602 3.00584 3.26027 3.37620 3.39098 3.47175 3.49825 3.82041 4.28177 4.52863 4.54722 4.57901 4.97724 5.03612 5.15212 5.24623 5.29196 5.40812 5.44539 5.53625 5.61376 5.70660 5.73221 5.82257 5.89741 5.92759 5.98164 6.13623 6.25263 6.38377 6.38989 6.57181 6.64430 6.73064 6.82603 6.88285 6.88530 7.01091 7.07186 7.14731 7.40542 7.68939 7.83566 8.48969 9.25363 9.89039 10.45909 11.32667 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.018405 B = 0.002553 C = 0.002375 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1520.989869 B =10966.880910 C =11786.514525 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.904 5.904 2 C 0.000 4.000 3 Si 0.901 3.099 4 H -0.278 1.278 5 H -0.291 1.291 6 H -0.289 1.289 7 C -0.248 4.248 8 H 0.065 0.935 9 N -0.593 5.593 10 C 0.172 3.828 11 C -0.135 4.135 12 C -0.083 4.083 13 C 0.121 3.879 14 N -1.113 6.113 15 S 2.700 3.300 16 O -0.962 6.962 17 O -0.969 6.969 18 C -0.731 4.731 19 C 0.029 3.971 20 C -0.220 4.220 21 C 0.264 3.736 22 N -0.869 5.869 23 C -0.218 4.218 24 C 0.028 3.972 25 C -0.129 4.129 26 C 0.144 3.856 27 H 0.252 0.748 28 H 0.016 0.984 29 H 0.087 0.913 30 H 0.050 0.950 31 H 0.058 0.942 32 H 0.070 0.930 33 H 0.060 0.940 34 H 0.077 0.923 35 H 0.418 0.582 36 H 0.139 0.861 37 H 0.128 0.872 38 H 0.402 0.598 39 H 0.402 0.598 40 H 0.129 0.871 41 H 0.140 0.860 42 H 0.061 0.939 43 H 0.051 0.949 44 H 0.016 0.984 45 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.997 -19.889 14.875 25.334 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.549 5.549 2 C -0.198 4.198 3 Si 0.731 3.269 4 H -0.203 1.203 5 H -0.218 1.218 6 H -0.216 1.216 7 C -0.378 4.378 8 H 0.083 0.917 9 N -0.316 5.316 10 C 0.046 3.954 11 C -0.175 4.175 12 C -0.103 4.103 13 C -0.005 4.005 14 N -0.874 5.874 15 S 2.790 3.210 16 O -0.952 6.952 17 O -0.960 6.960 18 C -0.820 4.820 19 C 0.009 3.991 20 C -0.243 4.243 21 C 0.156 3.844 22 N -0.405 5.405 23 C -0.241 4.241 24 C 0.008 3.992 25 C -0.168 4.168 26 C 0.018 3.982 27 H 0.062 0.938 28 H 0.035 0.965 29 H 0.105 0.895 30 H 0.068 0.932 31 H 0.077 0.923 32 H 0.088 0.912 33 H 0.078 0.922 34 H 0.096 0.904 35 H 0.253 0.747 36 H 0.156 0.844 37 H 0.146 0.854 38 H 0.230 0.770 39 H 0.231 0.769 40 H 0.147 0.853 41 H 0.158 0.842 42 H 0.079 0.921 43 H 0.069 0.931 44 H 0.034 0.966 45 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -4.238 -20.112 14.921 25.399 hybrid contribution -0.815 0.806 0.420 1.220 sum -5.053 -19.307 15.341 25.172 Atomic orbital electron populations 1.70043 1.05244 1.25282 1.54337 1.25039 0.95286 0.98388 1.01101 0.86240 0.79422 0.84022 0.77207 1.20259 1.21809 1.21618 1.19238 0.92564 0.84853 1.41155 0.91698 1.44068 1.35887 1.01567 1.50062 1.20743 0.88609 0.98094 0.87939 1.22220 1.00243 0.94948 1.00121 1.21243 0.98918 0.94867 0.95283 1.21519 1.01227 0.80580 0.97199 1.55459 1.83652 1.22724 1.25548 1.01546 0.73798 0.72445 0.73173 1.93576 1.44663 1.79117 1.77813 1.93563 1.86976 1.46916 1.68520 1.30626 1.21141 1.12876 1.17395 1.20634 0.89324 0.91218 0.97924 1.20677 1.04138 1.05592 0.93922 1.18073 0.87644 0.90873 0.87786 1.42695 1.33997 1.47155 1.16700 1.20697 0.98700 1.03216 1.01532 1.20694 0.94785 0.93499 0.90208 1.22070 0.96989 0.98970 0.98753 1.20913 0.97511 0.86949 0.92841 0.93776 0.96543 0.89494 0.93178 0.92328 0.91196 0.92183 0.90437 0.74715 0.84355 0.85406 0.76981 0.76924 0.85299 0.84205 0.92051 0.93058 0.96628 0.92890 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.14 11.19 55.49 0.62 -25.52 16 2 C 0.00 0.00 4.92 -17.43 -0.09 -0.08 16 3 Si 0.90 21.72 29.59 -169.99 -5.03 16.69 16 4 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 5 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 6 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 7 C -0.25 -6.82 9.58 -15.06 -0.14 -6.96 16 8 H 0.07 1.77 7.88 -52.49 -0.41 1.35 16 9 N -0.59 -14.73 2.99 -172.32 -0.52 -15.25 16 10 C 0.17 3.99 5.30 -3.71 -0.02 3.97 16 11 C -0.14 -2.42 5.36 -26.61 -0.14 -2.56 16 12 C -0.08 -1.28 2.17 -90.58 -0.20 -1.48 16 13 C 0.12 1.51 5.61 -4.04 -0.02 1.49 16 14 N -1.11 -12.69 5.51 -10.61 -0.06 -12.75 16 15 S 2.70 33.19 5.74 -107.50 -0.62 32.57 16 16 O -0.96 -14.58 16.74 -57.17 -0.96 -15.53 16 17 O -0.97 -13.92 17.27 -57.17 -0.99 -14.91 16 18 C -0.73 -7.91 5.95 -39.54 -0.24 -8.14 16 19 C 0.03 0.29 9.51 -39.61 -0.38 -0.09 16 20 C -0.22 -1.84 9.90 -39.38 -0.39 -2.23 16 21 C 0.26 2.09 6.75 -83.79 -0.57 1.52 16 22 N -0.87 -3.94 9.09 32.41 0.29 -3.65 16 23 C -0.22 -1.88 9.90 -39.38 -0.39 -2.27 16 24 C 0.03 0.29 9.51 -39.61 -0.38 -0.09 16 25 C -0.13 -2.18 5.26 -26.61 -0.14 -2.32 16 26 C 0.14 3.00 6.52 -3.70 -0.02 2.97 16 27 H 0.25 7.03 8.31 -40.82 -0.34 6.70 16 28 H 0.02 0.40 8.14 -51.93 -0.42 -0.02 16 29 H 0.09 2.28 6.07 -51.93 -0.31 1.96 16 30 H 0.05 0.79 8.14 -51.93 -0.42 0.36 16 31 H 0.06 1.08 8.14 -51.92 -0.42 0.65 16 32 H 0.07 1.06 8.14 -51.93 -0.42 0.64 16 33 H 0.06 0.66 8.14 -51.93 -0.42 0.23 16 34 H 0.08 1.00 7.75 -51.93 -0.40 0.60 16 35 H 0.42 4.25 8.37 -34.47 -0.29 3.96 16 36 H 0.14 1.18 7.61 -52.49 -0.40 0.78 16 37 H 0.13 0.77 8.06 -52.48 -0.42 0.34 16 38 H 0.40 1.10 8.84 -40.82 -0.36 0.74 16 39 H 0.40 1.16 8.84 -40.82 -0.36 0.80 16 40 H 0.13 0.83 8.06 -52.48 -0.42 0.41 16 41 H 0.14 1.30 7.61 -52.49 -0.40 0.90 16 42 H 0.06 1.10 8.14 -51.93 -0.42 0.68 16 43 H 0.05 0.75 7.50 -51.93 -0.39 0.36 16 44 H 0.02 0.33 8.14 -51.93 -0.42 -0.09 16 45 H 0.05 1.10 7.93 -51.93 -0.41 0.68 16 LS Contribution 375.52 15.07 5.66 5.66 Total: -1.00 -34.92 375.52 -11.38 -46.30 By element: Atomic # 1 Polarization: 9.32 SS G_CDS: -6.68 Total: 2.64 kcal Atomic # 6 Polarization: -13.15 SS G_CDS: -3.11 Total: -16.26 kcal Atomic # 7 Polarization: -57.50 SS G_CDS: 0.34 Total: -57.16 kcal Atomic # 8 Polarization: -28.50 SS G_CDS: -1.94 Total: -30.44 kcal Atomic # 14 Polarization: 21.72 SS G_CDS: -5.03 Total: 16.69 kcal Atomic # 16 Polarization: 33.19 SS G_CDS: -0.62 Total: 32.57 kcal Total LS contribution 5.66 Total: 5.66 kcal Total: -34.92 -11.38 -46.30 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000351899647.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.307 kcal (2) G-P(sol) polarization free energy of solvation -34.917 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.610 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.383 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.300 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.993 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds