Wall clock time and date at job start Tue Mar 31 2020 22:25:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86791 * 120.00230 * 2 1 4 4 H 1.48507 * 109.47310 * 239.99854 * 3 2 1 5 5 H 1.48501 * 109.47375 * 0.02562 * 3 2 1 6 6 H 1.48503 * 109.47121 * 119.99961 * 3 2 1 7 7 C 1.37878 * 119.99745 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00267 * 179.97438 * 7 2 1 9 9 C 1.50705 * 120.00217 * 0.02562 * 7 2 1 10 10 C 1.52995 * 109.47297 * 179.97438 * 9 7 2 11 11 N 1.46504 * 109.47133 * 179.97438 * 10 9 7 12 12 C 1.34780 * 119.99850 * 180.02562 * 11 10 9 13 13 O 1.21358 * 119.99674 * 0.02562 * 12 11 10 14 14 C 1.49338 * 119.99911 * 180.02562 * 12 11 10 15 15 O 1.21376 * 119.99994 * 0.02562 * 14 12 11 16 16 N 1.34772 * 120.00146 * 180.02562 * 14 12 11 17 17 C 1.39551 * 119.99998 * 185.27981 * 16 14 12 18 18 C 1.39058 * 119.95462 * 33.49849 * 17 16 14 19 19 C 1.37820 * 120.05001 * 180.02562 * 18 17 16 20 20 C 1.39458 * 119.94683 * 359.97438 * 19 18 17 21 21 C 1.48266 * 120.03909 * 180.02562 * 20 19 18 22 22 C 1.39390 * 119.72559 * 180.02562 * 21 20 19 23 23 C 1.38379 * 119.06162 * 180.02562 * 22 21 20 24 24 C 1.38806 * 118.51669 * 359.97438 * 23 22 21 25 25 C 1.38238 * 119.37722 * 0.26157 * 24 23 22 26 26 N 1.31770 * 120.89545 * 359.49074 * 25 24 23 27 27 C 1.39445 * 119.90969 * 0.27515 * 20 19 18 28 28 C 1.37822 * 119.95156 * 359.44603 * 27 20 19 29 29 H 0.96997 * 119.99324 * 359.97438 * 1 2 3 30 30 H 1.09003 * 109.47095 * 59.99803 * 9 7 2 31 31 H 1.08999 * 109.46861 * 300.00340 * 9 7 2 32 32 H 1.09003 * 109.46947 * 60.00033 * 10 9 7 33 33 H 1.09001 * 109.47445 * 300.00611 * 10 9 7 34 34 H 0.96997 * 119.99704 * 0.02562 * 11 10 9 35 35 H 0.97003 * 120.00125 * 5.27931 * 16 14 12 36 36 H 1.08002 * 119.97969 * 359.97438 * 18 17 16 37 37 H 1.07999 * 120.02615 * 180.02562 * 19 18 17 38 38 H 1.08001 * 120.47096 * 359.97347 * 22 21 20 39 39 H 1.07995 * 120.74181 * 180.02562 * 23 22 21 40 40 H 1.08000 * 120.31026 * 179.97438 * 24 23 22 41 41 H 1.08000 * 119.55083 * 179.72076 * 25 24 23 42 42 H 1.08000 * 120.02508 * 179.70216 * 27 20 19 43 43 H 1.07997 * 119.97497 * 180.27347 * 28 27 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 3.1031 1.6963 -1.2125 5 1 1.2843 2.7464 0.0006 6 1 3.1030 1.6963 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1942 0.0001 9 6 1.2510 -2.4992 0.0005 10 6 2.2452 -3.6621 0.0005 11 7 1.5126 -4.9309 0.0012 12 6 2.1865 -6.0981 0.0018 13 8 3.4001 -6.0981 0.0023 14 6 1.4398 -7.3914 0.0018 15 8 0.2260 -7.3914 0.0008 16 7 2.1136 -8.5586 0.0030 17 6 1.4203 -9.7646 -0.1082 18 6 0.2607 -9.8310 -0.8728 19 6 -0.4258 -11.0209 -0.9835 20 6 0.0436 -12.1590 -0.3284 21 6 -0.6930 -13.4403 -0.4465 22 6 -0.2183 -14.5737 0.2115 23 6 -0.9163 -15.7625 0.0913 24 6 -2.0680 -15.7793 -0.6833 25 6 -2.4792 -14.6191 -1.3124 26 7 -1.7987 -13.4988 -1.1778 27 6 1.2038 -12.0890 0.4421 28 6 1.8904 -10.8984 0.5454 29 1 -0.4849 0.8401 0.0004 30 1 0.6246 -2.5571 -0.8897 31 1 0.6240 -2.5567 0.8903 32 1 2.8718 -3.6044 0.8906 33 1 2.8719 -3.6044 -0.8894 34 1 0.5426 -4.9308 0.0011 35 1 3.0805 -8.5604 0.0811 36 1 -0.1027 -8.9492 -1.3796 37 1 -1.3261 -11.0721 -1.5778 38 1 0.6821 -14.5250 0.8060 39 1 -0.5731 -16.6569 0.5898 40 1 -2.6349 -16.6915 -0.7972 41 1 -3.3723 -14.6302 -1.9194 42 1 1.5663 -12.9681 0.9541 43 1 2.7914 -10.8449 1.1384 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000354203993.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:25:53 Heat of formation + Delta-G solvation = -9.468737 kcal Electronic energy + Delta-G solvation = -26383.317900 eV Core-core repulsion = 22393.306439 eV Total energy + Delta-G solvation = -3990.011461 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 339.137 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -41.15716 -40.56122 -39.24467 -38.10010 -35.68391 -34.83748 -33.00813 -32.89403 -32.35058 -31.21585 -29.90703 -29.06662 -26.00800 -24.64298 -24.35230 -23.33224 -22.57111 -21.58818 -21.02903 -20.20964 -18.72689 -17.99119 -17.47393 -16.68600 -16.62646 -16.42232 -16.05040 -15.89780 -15.05673 -14.91333 -14.77067 -14.56658 -14.49067 -14.37554 -14.18471 -13.75232 -13.60331 -13.40008 -13.16009 -12.85764 -12.57188 -12.33924 -12.13071 -11.61206 -11.47042 -11.27412 -11.07061 -10.88398 -10.70612 -10.43120 -10.30607 -9.88817 -9.82793 -9.63115 -9.52394 -9.30307 -9.19504 -8.78130 -8.44261 -8.14706 -6.11960 -4.16009 0.14602 0.84581 1.12648 1.18447 1.66539 2.32842 3.15851 3.29494 3.33935 3.36149 3.36320 3.68464 3.76008 3.77734 4.23235 4.37613 4.43024 4.55068 4.57464 4.65758 4.67703 4.71770 5.05500 5.09139 5.20047 5.24912 5.25798 5.31362 5.57440 5.71997 5.77551 5.89836 5.97758 6.11585 6.13417 6.18495 6.27016 6.32181 6.50041 6.62614 6.66289 6.87781 7.39014 7.53356 7.54164 7.58337 7.76012 7.84461 8.12559 8.26128 8.89202 9.49051 10.99399 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.032806 B = 0.001558 C = 0.001499 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 853.303441 B =17972.995550 C =18678.257043 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.892 5.892 2 C 0.060 3.940 3 Si 0.899 3.101 4 H -0.275 1.275 5 H -0.287 1.287 6 H -0.276 1.276 7 C -0.525 4.525 8 H 0.060 0.940 9 C 0.011 3.989 10 C 0.118 3.882 11 N -0.682 5.682 12 C 0.500 3.500 13 O -0.529 6.529 14 C 0.508 3.492 15 O -0.495 6.495 16 N -0.650 5.650 17 C 0.163 3.837 18 C -0.127 4.127 19 C -0.054 4.054 20 C -0.074 4.074 21 C 0.178 3.822 22 C -0.168 4.168 23 C -0.072 4.072 24 C -0.182 4.182 25 C 0.107 3.893 26 N -0.480 5.480 27 C -0.078 4.078 28 C -0.146 4.146 29 H 0.263 0.737 30 H 0.026 0.974 31 H 0.026 0.974 32 H 0.065 0.935 33 H 0.065 0.935 34 H 0.411 0.589 35 H 0.424 0.576 36 H 0.140 0.860 37 H 0.140 0.860 38 H 0.138 0.862 39 H 0.135 0.865 40 H 0.135 0.865 41 H 0.158 0.842 42 H 0.131 0.869 43 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.774 -33.431 -0.077 33.440 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.530 5.530 2 C -0.142 4.142 3 Si 0.726 3.274 4 H -0.201 1.201 5 H -0.212 1.212 6 H -0.201 1.201 7 C -0.564 4.564 8 H 0.078 0.922 9 C -0.027 4.027 10 C -0.003 4.003 11 N -0.333 5.333 12 C 0.279 3.721 13 O -0.407 6.407 14 C 0.291 3.709 15 O -0.367 6.367 16 N -0.297 5.297 17 C 0.068 3.932 18 C -0.147 4.147 19 C -0.074 4.074 20 C -0.076 4.076 21 C 0.042 3.958 22 C -0.187 4.187 23 C -0.098 4.098 24 C -0.202 4.202 25 C -0.051 4.051 26 N -0.189 5.189 27 C -0.097 4.097 28 C -0.167 4.167 29 H 0.073 0.927 30 H 0.044 0.956 31 H 0.044 0.956 32 H 0.083 0.917 33 H 0.083 0.917 34 H 0.247 0.753 35 H 0.262 0.738 36 H 0.158 0.842 37 H 0.157 0.843 38 H 0.155 0.845 39 H 0.153 0.847 40 H 0.153 0.847 41 H 0.175 0.825 42 H 0.149 0.851 43 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges -1.232 -32.428 -0.512 32.455 hybrid contribution 0.667 0.078 0.517 0.848 sum -0.565 -32.350 0.005 32.355 Atomic orbital electron populations 1.69950 1.06096 1.27104 1.49841 1.24998 0.94903 0.99442 0.94867 0.86549 0.79493 0.82577 0.78764 1.20090 1.21213 1.20100 1.20963 0.93186 0.90215 1.52032 0.92197 1.19361 0.94180 0.90821 0.98310 1.21984 0.96321 0.80537 1.01487 1.46249 1.11880 1.05717 1.69456 1.19712 0.87655 0.84928 0.79823 1.90753 1.13018 1.87348 1.49616 1.20688 0.87872 0.85516 0.76841 1.90795 1.13318 1.87377 1.45238 1.43211 1.11931 1.03588 1.70972 1.17903 0.94163 0.85151 0.95981 1.21207 0.95478 0.99063 0.98935 1.21187 0.98947 0.90489 0.96744 1.18464 0.95911 0.91803 1.01427 1.19783 0.91075 0.92543 0.92393 1.22111 1.01810 0.93200 1.01615 1.21545 0.94087 0.97975 0.96150 1.22193 0.98185 1.00212 0.99579 1.22759 0.98281 0.87712 0.96368 1.67657 1.06325 1.28590 1.16334 1.20938 0.93804 0.97481 0.97511 1.20797 1.02344 0.92080 1.01450 0.92690 0.95616 0.95608 0.91701 0.91686 0.75266 0.73760 0.84185 0.84251 0.84471 0.84683 0.84746 0.82507 0.85116 0.84893 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.87 13.29 55.43 0.74 -25.13 16 2 C 0.06 1.67 5.46 -17.82 -0.10 1.57 16 3 Si 0.90 21.09 29.54 -169.99 -5.02 16.07 16 4 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 5 H -0.29 -6.67 7.11 56.52 0.40 -6.27 16 6 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 7 C -0.53 -14.26 9.11 -34.44 -0.31 -14.57 16 8 H 0.06 1.57 7.74 -52.49 -0.41 1.17 16 9 C 0.01 0.26 5.09 -27.88 -0.14 0.12 16 10 C 0.12 2.40 5.61 -4.04 -0.02 2.37 16 11 N -0.68 -11.94 5.55 -60.77 -0.34 -12.27 16 12 C 0.50 8.19 7.89 -11.64 -0.09 8.10 16 13 O -0.53 -9.53 16.48 5.49 0.09 -9.44 16 14 C 0.51 7.31 7.62 -11.64 -0.09 7.22 16 15 O -0.49 -7.95 14.16 5.47 0.08 -7.87 16 16 N -0.65 -7.50 5.31 -10.28 -0.05 -7.55 16 17 C 0.16 1.82 6.27 -83.74 -0.53 1.29 16 18 C -0.13 -1.52 8.63 -39.43 -0.34 -1.87 16 19 C -0.05 -0.61 9.56 -39.28 -0.38 -0.98 16 20 C -0.07 -0.75 5.88 -104.87 -0.62 -1.36 16 21 C 0.18 1.71 6.73 -82.95 -0.56 1.16 16 22 C -0.17 -1.19 9.46 -39.10 -0.37 -1.56 16 23 C -0.07 -0.41 10.17 -39.32 -0.40 -0.81 16 24 C -0.18 -1.04 10.11 -39.37 -0.40 -1.44 16 25 C 0.11 0.80 11.17 -17.58 -0.20 0.60 16 26 N -0.48 -4.90 9.43 -9.78 -0.09 -4.99 16 27 C -0.08 -0.64 9.41 -39.28 -0.37 -1.01 16 28 C -0.15 -1.28 9.95 -39.43 -0.39 -1.67 16 29 H 0.26 7.25 8.31 -40.82 -0.34 6.91 16 30 H 0.03 0.65 8.14 -51.93 -0.42 0.23 16 31 H 0.03 0.66 8.14 -51.93 -0.42 0.23 16 32 H 0.06 1.33 8.14 -51.93 -0.42 0.91 16 33 H 0.06 1.33 8.14 -51.93 -0.42 0.91 16 34 H 0.41 6.84 7.94 -40.82 -0.32 6.52 16 35 H 0.42 4.09 8.29 -40.82 -0.34 3.75 16 36 H 0.14 1.83 6.41 -52.49 -0.34 1.49 16 37 H 0.14 1.52 7.53 -52.49 -0.40 1.12 16 38 H 0.14 0.65 6.18 -52.49 -0.32 0.33 16 39 H 0.14 0.41 8.06 -52.49 -0.42 -0.02 16 40 H 0.13 0.41 8.06 -52.49 -0.42 -0.01 16 41 H 0.16 0.76 8.06 -52.49 -0.42 0.34 16 42 H 0.13 0.69 6.17 -52.49 -0.32 0.37 16 43 H 0.13 0.84 8.06 -52.49 -0.42 0.42 16 LS Contribution 376.56 15.07 5.67 5.67 Total: -1.00 -32.69 376.56 -9.19 -41.87 By element: Atomic # 1 Polarization: 11.45 SS G_CDS: -4.97 Total: 6.49 kcal Atomic # 6 Polarization: 2.45 SS G_CDS: -5.30 Total: -2.84 kcal Atomic # 7 Polarization: -50.20 SS G_CDS: 0.25 Total: -49.95 kcal Atomic # 8 Polarization: -17.48 SS G_CDS: 0.17 Total: -17.32 kcal Atomic # 14 Polarization: 21.09 SS G_CDS: -5.02 Total: 16.07 kcal Total LS contribution 5.67 Total: 5.67 kcal Total: -32.69 -9.19 -41.87 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000354203993.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.406 kcal (2) G-P(sol) polarization free energy of solvation -32.685 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.279 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.190 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.875 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.469 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds