Wall clock time and date at job start Tue Mar 31 2020 22:25:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86791 * 120.00230 * 2 1 4 4 H 1.48507 * 109.47310 * 239.99854 * 3 2 1 5 5 H 1.48501 * 109.47375 * 0.02562 * 3 2 1 6 6 H 1.48503 * 109.47121 * 119.99961 * 3 2 1 7 7 C 1.37878 * 119.99745 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00267 * 179.97438 * 7 2 1 9 9 C 1.50705 * 120.00217 * 0.02562 * 7 2 1 10 10 C 1.52995 * 109.47297 * 179.97438 * 9 7 2 11 11 N 1.46504 * 109.47133 * 179.97438 * 10 9 7 12 12 C 1.34780 * 119.99850 * 180.02562 * 11 10 9 13 13 O 1.21358 * 119.99674 * 0.02562 * 12 11 10 14 14 C 1.49338 * 119.99911 * 180.02562 * 12 11 10 15 15 O 1.21376 * 119.99994 * 0.02562 * 14 12 11 16 16 N 1.34772 * 120.00146 * 180.02562 * 14 12 11 17 17 C 1.39551 * 119.99998 * 185.27981 * 16 14 12 18 18 C 1.39058 * 119.95462 * 33.49849 * 17 16 14 19 19 C 1.37820 * 120.05001 * 180.02562 * 18 17 16 20 20 C 1.39458 * 119.94683 * 359.97438 * 19 18 17 21 21 C 1.48266 * 120.03909 * 180.02562 * 20 19 18 22 22 C 1.39390 * 119.72559 * 180.02562 * 21 20 19 23 23 C 1.38379 * 119.06162 * 180.02562 * 22 21 20 24 24 C 1.38806 * 118.51669 * 359.97438 * 23 22 21 25 25 C 1.38238 * 119.37722 * 0.26157 * 24 23 22 26 26 N 1.31770 * 120.89545 * 359.49074 * 25 24 23 27 27 C 1.39445 * 119.90969 * 0.27515 * 20 19 18 28 28 C 1.37822 * 119.95156 * 359.44603 * 27 20 19 29 29 H 0.96997 * 119.99324 * 359.97438 * 1 2 3 30 30 H 1.09003 * 109.47095 * 59.99803 * 9 7 2 31 31 H 1.08999 * 109.46861 * 300.00340 * 9 7 2 32 32 H 1.09003 * 109.46947 * 60.00033 * 10 9 7 33 33 H 1.09001 * 109.47445 * 300.00611 * 10 9 7 34 34 H 0.96997 * 119.99704 * 0.02562 * 11 10 9 35 35 H 0.97003 * 120.00125 * 5.27931 * 16 14 12 36 36 H 1.08002 * 119.97969 * 359.97438 * 18 17 16 37 37 H 1.07999 * 120.02615 * 180.02562 * 19 18 17 38 38 H 1.08001 * 120.47096 * 359.97347 * 22 21 20 39 39 H 1.07995 * 120.74181 * 180.02562 * 23 22 21 40 40 H 1.08000 * 120.31026 * 179.97438 * 24 23 22 41 41 H 1.08000 * 119.55083 * 179.72076 * 25 24 23 42 42 H 1.08000 * 120.02508 * 179.70216 * 27 20 19 43 43 H 1.07997 * 119.97497 * 180.27347 * 28 27 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 3.1031 1.6963 -1.2125 5 1 1.2843 2.7464 0.0006 6 1 3.1030 1.6963 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1942 0.0001 9 6 1.2510 -2.4992 0.0005 10 6 2.2452 -3.6621 0.0005 11 7 1.5126 -4.9309 0.0012 12 6 2.1865 -6.0981 0.0018 13 8 3.4001 -6.0981 0.0023 14 6 1.4398 -7.3914 0.0018 15 8 0.2260 -7.3914 0.0008 16 7 2.1136 -8.5586 0.0030 17 6 1.4203 -9.7646 -0.1082 18 6 0.2607 -9.8310 -0.8728 19 6 -0.4258 -11.0209 -0.9835 20 6 0.0436 -12.1590 -0.3284 21 6 -0.6930 -13.4403 -0.4465 22 6 -0.2183 -14.5737 0.2115 23 6 -0.9163 -15.7625 0.0913 24 6 -2.0680 -15.7793 -0.6833 25 6 -2.4792 -14.6191 -1.3124 26 7 -1.7987 -13.4988 -1.1778 27 6 1.2038 -12.0890 0.4421 28 6 1.8904 -10.8984 0.5454 29 1 -0.4849 0.8401 0.0004 30 1 0.6246 -2.5571 -0.8897 31 1 0.6240 -2.5567 0.8903 32 1 2.8718 -3.6044 0.8906 33 1 2.8719 -3.6044 -0.8894 34 1 0.5426 -4.9308 0.0011 35 1 3.0805 -8.5604 0.0811 36 1 -0.1027 -8.9492 -1.3796 37 1 -1.3261 -11.0721 -1.5778 38 1 0.6821 -14.5250 0.8060 39 1 -0.5731 -16.6569 0.5898 40 1 -2.6349 -16.6915 -0.7972 41 1 -3.3723 -14.6302 -1.9194 42 1 1.5663 -12.9681 0.9541 43 1 2.7914 -10.8449 1.1384 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000354203993.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:25:53 Heat of formation + Delta-G solvation = -30.941723 kcal Electronic energy + Delta-G solvation = -26384.249039 eV Core-core repulsion = 22393.306439 eV Total energy + Delta-G solvation = -3990.942600 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 339.137 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -42.22377 -41.22791 -40.31750 -39.15296 -37.01779 -36.11665 -34.83025 -33.52127 -33.03503 -31.95797 -31.72332 -29.84839 -27.52423 -25.93330 -24.97522 -24.34646 -23.35372 -22.86110 -22.26252 -21.37692 -19.91021 -18.77844 -18.59312 -18.25805 -17.49625 -17.30933 -17.21036 -16.79711 -16.52304 -16.33881 -15.96900 -15.49224 -15.35784 -15.23024 -15.11146 -14.85701 -14.65774 -14.39088 -14.30342 -13.89166 -13.79710 -13.30387 -13.24211 -12.93185 -12.91118 -12.57586 -12.52049 -12.28225 -12.26042 -11.73470 -11.67253 -11.45828 -10.83998 -10.80021 -10.61292 -10.38891 -10.29099 -10.24063 -9.99508 -8.90696 -8.23361 -6.34776 -0.55318 0.14525 0.36935 0.39164 0.81021 1.16382 1.43761 1.45811 1.53914 1.98303 2.38460 2.55312 2.61478 3.11749 3.11936 3.19313 3.27998 3.68160 3.94423 3.94817 4.05684 4.16342 4.23763 4.35613 4.36543 4.41479 4.44345 4.53090 4.58465 4.80341 4.81766 4.98939 5.01884 5.08814 5.15527 5.18774 5.28387 5.35138 5.41547 5.53633 5.54095 5.73200 5.79353 5.82321 5.91816 6.11994 6.25967 6.58835 6.76894 6.82647 7.04569 7.34900 8.88348 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.032806 B = 0.001558 C = 0.001499 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 853.303441 B =17972.995550 C =18678.257043 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.928 5.928 2 C 0.005 3.995 3 Si 0.968 3.032 4 H -0.267 1.267 5 H -0.284 1.284 6 H -0.267 1.267 7 C -0.546 4.546 8 H 0.066 0.934 9 C 0.017 3.983 10 C 0.138 3.862 11 N -0.686 5.686 12 C 0.506 3.494 13 O -0.542 6.542 14 C 0.515 3.485 15 O -0.517 6.517 16 N -0.631 5.631 17 C 0.138 3.862 18 C -0.141 4.141 19 C -0.073 4.073 20 C -0.074 4.074 21 C 0.144 3.856 22 C -0.166 4.166 23 C -0.074 4.074 24 C -0.174 4.174 25 C 0.085 3.915 26 N -0.516 5.516 27 C -0.072 4.072 28 C -0.132 4.132 29 H 0.265 0.735 30 H 0.007 0.993 31 H 0.008 0.992 32 H 0.065 0.935 33 H 0.064 0.936 34 H 0.415 0.585 35 H 0.434 0.566 36 H 0.119 0.881 37 H 0.129 0.871 38 H 0.163 0.837 39 H 0.169 0.831 40 H 0.164 0.836 41 H 0.172 0.828 42 H 0.169 0.831 43 H 0.165 0.835 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.910 -36.184 1.045 36.211 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.567 5.567 2 C -0.193 4.193 3 Si 0.792 3.208 4 H -0.192 1.192 5 H -0.209 1.209 6 H -0.191 1.191 7 C -0.584 4.584 8 H 0.084 0.916 9 C -0.020 4.020 10 C 0.015 3.985 11 N -0.337 5.337 12 C 0.286 3.714 13 O -0.421 6.421 14 C 0.297 3.703 15 O -0.392 6.392 16 N -0.279 5.279 17 C 0.044 3.956 18 C -0.162 4.162 19 C -0.092 4.092 20 C -0.076 4.076 21 C 0.009 3.991 22 C -0.186 4.186 23 C -0.100 4.100 24 C -0.193 4.193 25 C -0.072 4.072 26 N -0.226 5.226 27 C -0.091 4.091 28 C -0.152 4.152 29 H 0.074 0.926 30 H 0.026 0.974 31 H 0.026 0.974 32 H 0.083 0.917 33 H 0.082 0.918 34 H 0.252 0.748 35 H 0.274 0.726 36 H 0.137 0.863 37 H 0.146 0.854 38 H 0.180 0.820 39 H 0.186 0.814 40 H 0.182 0.818 41 H 0.189 0.811 42 H 0.186 0.814 43 H 0.183 0.817 Dipole moment (debyes) X Y Z Total from point charges 0.478 -35.229 0.607 35.238 hybrid contribution 0.068 0.698 0.147 0.717 sum 0.546 -34.531 0.754 34.543 Atomic orbital electron populations 1.70076 1.07718 1.28068 1.50876 1.25916 0.95756 1.03284 0.94390 0.85458 0.78207 0.77907 0.79225 1.19183 1.20938 1.19147 1.21426 0.93802 0.91513 1.51698 0.91581 1.19188 0.94389 0.91961 0.96490 1.21522 0.95080 0.80470 1.01417 1.46071 1.12001 1.05411 1.70182 1.19958 0.87451 0.85243 0.78715 1.90740 1.13639 1.87684 1.50011 1.20186 0.87357 0.85480 0.77285 1.90800 1.14044 1.87503 1.46816 1.43025 1.12318 1.02913 1.69618 1.18057 0.94463 0.85582 0.97488 1.21101 0.96468 0.98708 0.99884 1.21133 0.99089 0.91085 0.97888 1.18754 0.96413 0.91687 1.00716 1.19921 0.91763 0.93225 0.94193 1.22412 1.02538 0.92686 1.00917 1.22005 0.93617 0.98645 0.95690 1.22574 0.98160 1.00496 0.98078 1.23165 0.98897 0.87898 0.97257 1.67578 1.07287 1.30326 1.17416 1.21332 0.92644 0.98524 0.96618 1.21146 1.02857 0.90977 1.00210 0.92610 0.97433 0.97375 0.91683 0.91770 0.74849 0.72558 0.86280 0.85353 0.81976 0.81388 0.81813 0.81050 0.81410 0.81746 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -54.80 13.29 21.45 0.28 -54.51 16 2 C 0.01 0.30 5.46 84.65 0.46 0.76 16 3 Si 0.97 43.20 29.54 68.60 2.03 45.23 16 4 H -0.27 -11.48 7.11 99.48 0.71 -10.77 16 5 H -0.28 -12.46 7.11 99.48 0.71 -11.75 16 6 H -0.27 -11.45 7.11 99.48 0.71 -10.74 16 7 C -0.55 -29.94 9.11 25.60 0.23 -29.71 16 8 H 0.07 3.46 7.74 -2.91 -0.02 3.43 16 9 C 0.02 0.86 5.09 29.85 0.15 1.02 16 10 C 0.14 5.66 5.61 86.38 0.48 6.14 16 11 N -0.69 -24.48 5.55 -464.52 -2.58 -27.05 16 12 C 0.51 16.65 7.89 87.23 0.69 17.34 16 13 O -0.54 -19.23 16.48 -3.27 -0.05 -19.28 16 14 C 0.51 14.99 7.62 87.24 0.66 15.65 16 15 O -0.52 -17.26 14.16 -3.33 -0.05 -17.31 16 16 N -0.63 -14.22 5.31 -304.80 -1.62 -15.84 16 17 C 0.14 3.02 6.27 38.31 0.24 3.26 16 18 C -0.14 -3.60 8.63 22.37 0.19 -3.41 16 19 C -0.07 -1.72 9.56 22.46 0.21 -1.51 16 20 C -0.07 -1.45 5.88 -20.03 -0.12 -1.57 16 21 C 0.14 2.66 6.73 41.96 0.28 2.94 16 22 C -0.17 -1.90 9.46 22.58 0.21 -1.68 16 23 C -0.07 -0.60 10.17 22.44 0.23 -0.37 16 24 C -0.17 -1.55 10.11 22.41 0.23 -1.32 16 25 C 0.09 1.21 11.17 84.70 0.95 2.16 16 26 N -0.52 -10.67 9.43 -184.87 -1.74 -12.41 16 27 C -0.07 -1.00 9.41 22.46 0.21 -0.79 16 28 C -0.13 -1.99 9.95 22.37 0.22 -1.76 16 29 H 0.27 14.80 8.31 -92.71 -0.77 14.03 16 30 H 0.01 0.39 8.14 -2.39 -0.02 0.37 16 31 H 0.01 0.42 8.14 -2.39 -0.02 0.40 16 32 H 0.06 2.67 8.14 -2.39 -0.02 2.65 16 33 H 0.06 2.65 8.14 -2.39 -0.02 2.63 16 34 H 0.42 14.34 7.94 -92.71 -0.74 13.61 16 35 H 0.43 7.80 8.29 -92.71 -0.77 7.03 16 36 H 0.12 3.44 6.41 -2.91 -0.02 3.42 16 37 H 0.13 3.17 7.53 -2.91 -0.02 3.15 16 38 H 0.16 0.86 6.18 -2.91 -0.02 0.84 16 39 H 0.17 0.21 8.06 -2.91 -0.02 0.18 16 40 H 0.16 0.42 8.06 -2.91 -0.02 0.39 16 41 H 0.17 1.61 8.06 -2.91 -0.02 1.58 16 42 H 0.17 1.01 6.17 -2.91 -0.02 0.99 16 43 H 0.17 1.41 8.06 -2.91 -0.02 1.39 16 Total: -1.00 -72.57 376.56 1.39 -71.18 By element: Atomic # 1 Polarization: 23.27 SS G_CDS: -0.43 Total: 22.85 kcal Atomic # 6 Polarization: 1.60 SS G_CDS: 5.55 Total: 7.15 kcal Atomic # 7 Polarization: -104.16 SS G_CDS: -5.65 Total: -109.81 kcal Atomic # 8 Polarization: -36.49 SS G_CDS: -0.10 Total: -36.59 kcal Atomic # 14 Polarization: 43.20 SS G_CDS: 2.03 Total: 45.23 kcal Total: -72.57 1.39 -71.18 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000354203993.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.241 kcal (2) G-P(sol) polarization free energy of solvation -72.574 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.332 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.391 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.183 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.942 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds