Wall clock time and date at job start Tue Mar 31 2020 23:02:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 N 1.31761 * 119.65624 * 2 1 4 4 C 1.32416 * 121.75813 * 180.26705 * 3 2 1 5 5 N 1.39159 * 119.56665 * 179.74595 * 4 3 2 6 6 C 1.34775 * 119.99730 * 4.80402 * 5 4 3 7 7 O 1.21364 * 120.00360 * 354.90937 * 6 5 4 8 8 C 1.49357 * 119.99738 * 174.63552 * 6 5 4 9 9 O 1.21359 * 120.00262 * 0.26845 * 8 6 5 10 10 N 1.34780 * 120.00158 * 180.27488 * 8 6 5 11 11 C 1.46496 * 120.00317 * 179.97438 * 10 8 6 12 12 C 1.50689 * 109.47529 * 179.97438 * 11 10 8 13 13 H 1.08004 * 120.00087 * 0.02562 * 12 11 10 14 14 C 1.37878 * 120.00459 * 179.97438 * 12 11 10 15 15 N 1.31517 * 120.00206 * 180.02562 * 14 12 11 16 16 Si 1.86800 * 119.99941 * 0.02562 * 14 12 11 17 17 H 1.48499 * 109.46985 * 89.99740 * 16 14 12 18 18 H 1.48493 * 109.47111 * 210.00062 * 16 14 12 19 19 H 1.48500 * 109.47027 * 329.99768 * 16 14 12 20 20 C 1.39184 * 120.86604 * 359.47695 * 4 3 2 21 21 C 1.38114 * 119.22235 * 0.24967 * 20 4 3 22 22 C 1.39242 * 119.66026 * 179.74439 * 2 1 3 23 23 C 1.48347 * 120.46215 * 0.02562 * 22 2 1 24 24 C 1.39365 * 120.12325 * 309.70286 * 23 22 2 25 25 C 1.38008 * 119.87726 * 179.76751 * 24 23 22 26 26 C 1.38327 * 120.11986 * 0.51258 * 25 24 23 27 27 C 1.38325 * 120.25259 * 359.73609 * 26 25 24 28 28 C 1.38020 * 120.12082 * 0.02562 * 27 26 25 29 29 H 1.08998 * 109.47115 * 270.25110 * 1 2 3 30 30 H 1.09000 * 109.47205 * 30.25621 * 1 2 3 31 31 H 1.09002 * 109.46870 * 150.25564 * 1 2 3 32 32 H 0.97001 * 119.99891 * 184.79609 * 5 4 3 33 33 H 0.97000 * 119.99767 * 359.97438 * 10 8 6 34 34 H 1.09005 * 109.47066 * 300.00420 * 11 10 8 35 35 H 1.09005 * 109.46808 * 59.99707 * 11 10 8 36 36 H 0.97000 * 120.00217 * 179.97438 * 15 14 12 37 37 H 1.08003 * 120.38854 * 180.28020 * 20 4 3 38 38 H 1.07994 * 120.80509 * 180.02562 * 21 20 4 39 39 H 1.08003 * 120.05919 * 0.02562 * 24 23 22 40 40 H 1.07995 * 119.94082 * 180.22484 * 25 24 23 41 41 H 1.08001 * 119.87325 * 179.76588 * 26 25 24 42 42 H 1.07995 * 119.94149 * 179.97438 * 27 26 25 43 43 H 1.07999 * 120.06371 * 180.02562 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1590 1.1450 0.0000 4 6 3.4822 1.1936 -0.0052 5 7 4.1240 2.4283 -0.0104 6 6 3.4031 3.5629 0.0878 7 8 2.1905 3.5133 0.0875 8 6 4.0966 4.8806 0.2030 9 8 5.3092 4.9302 0.2034 10 7 3.3758 6.0147 0.3068 11 6 4.0560 7.3072 0.4204 12 6 3.0310 8.4072 0.5213 13 1 1.9781 8.1675 0.5032 14 6 3.4372 9.7196 0.6380 15 7 2.5426 10.6795 0.7266 16 14 5.2584 10.1343 0.6702 17 1 5.7370 10.3692 -0.7158 18 1 5.4729 11.3588 1.4823 19 1 6.0128 9.0043 1.2696 20 6 4.2397 0.0259 -0.0001 21 6 3.5953 -1.1957 0.0054 22 6 2.1961 -1.2100 0.0054 23 6 1.4571 -2.4963 0.0106 24 6 0.4406 -2.7152 0.9385 25 6 -0.2468 -3.9119 0.9357 26 6 0.0786 -4.8971 0.0209 27 6 1.0900 -4.6873 -0.8991 28 6 1.7808 -3.4925 -0.9085 29 1 -0.3633 0.0045 1.0276 30 1 -0.3633 0.8877 -0.5178 31 1 -0.3633 -0.8923 -0.5099 32 1 5.0902 2.4724 -0.0845 33 1 2.4066 5.9751 0.3062 34 1 4.6826 7.3109 1.3123 35 1 4.6771 7.4696 -0.4606 36 1 2.8284 11.6028 0.8091 37 1 5.3186 0.0745 0.0001 38 1 4.1578 -2.1176 0.0098 39 1 0.1886 -1.9481 1.6558 40 1 -1.0371 -4.0812 1.6519 41 1 -0.4594 -5.8336 0.0247 42 1 1.3402 -5.4602 -1.6107 43 1 2.5701 -3.3295 -1.6275 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000354365315.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:02:22 Heat of formation + Delta-G solvation = 4.218028 kcal Electronic energy + Delta-G solvation = -27177.537025 eV Core-core repulsion = 23188.119066 eV Total energy + Delta-G solvation = -3989.417958 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 339.137 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.23611 -40.13554 -39.08652 -37.99422 -35.64572 -34.46043 -33.35882 -32.72186 -32.37812 -31.24847 -29.72260 -28.45930 -27.71781 -25.35958 -23.54012 -22.93248 -22.54279 -21.81849 -21.33054 -20.05957 -18.71985 -17.65783 -17.55375 -16.84481 -16.26007 -16.13163 -15.90625 -15.68987 -15.20517 -14.95068 -14.72880 -14.54267 -14.26161 -14.03833 -13.91857 -13.65391 -13.31992 -13.21956 -13.15642 -12.77847 -12.63226 -12.45135 -12.28194 -12.24577 -11.51069 -11.49390 -11.40487 -11.08644 -10.84957 -10.81983 -10.04866 -10.00035 -9.81879 -9.56622 -9.31386 -9.26932 -8.98544 -8.86581 -8.41515 -8.17776 -6.25536 -4.29437 0.44200 0.99579 1.04974 1.22802 1.83597 2.38897 3.22543 3.29769 3.32840 3.35628 3.48291 3.67776 3.75085 4.21605 4.27402 4.28994 4.50158 4.56520 4.61446 4.73921 4.76128 4.84601 4.94878 5.08530 5.10235 5.19726 5.31646 5.36990 5.42625 5.48532 5.66099 5.71294 5.79655 5.87792 6.01479 6.12144 6.15260 6.23241 6.48182 6.58661 6.60796 6.82335 6.90807 6.92291 7.23658 7.59478 7.94447 8.06579 8.34035 8.46343 8.74765 9.31725 10.86186 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.031599 B = 0.001898 C = 0.001810 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 885.902408 B =14748.059124 C =15461.920856 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.107 4.107 2 C 0.180 3.820 3 N -0.475 5.475 4 C 0.372 3.628 5 N -0.641 5.641 6 C 0.499 3.501 7 O -0.447 6.447 8 C 0.494 3.506 9 O -0.540 6.540 10 N -0.663 5.663 11 C 0.218 3.782 12 C -0.549 4.549 13 H 0.083 0.917 14 C 0.080 3.920 15 N -0.888 5.888 16 Si 0.877 3.123 17 H -0.272 1.272 18 H -0.282 1.282 19 H -0.261 1.261 20 C -0.210 4.210 21 C -0.031 4.031 22 C -0.142 4.142 23 C -0.031 4.031 24 C -0.106 4.106 25 C -0.118 4.118 26 C -0.121 4.121 27 C -0.119 4.119 28 C -0.109 4.109 29 H 0.081 0.919 30 H 0.082 0.918 31 H 0.078 0.922 32 H 0.429 0.571 33 H 0.411 0.589 34 H 0.033 0.967 35 H 0.029 0.971 36 H 0.269 0.731 37 H 0.141 0.859 38 H 0.139 0.861 39 H 0.125 0.875 40 H 0.124 0.876 41 H 0.121 0.879 42 H 0.122 0.878 43 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.279 -32.556 -1.790 32.630 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.041 3.959 3 N -0.190 5.190 4 C 0.141 3.859 5 N -0.289 5.289 6 C 0.280 3.720 7 O -0.313 6.313 8 C 0.273 3.727 9 O -0.420 6.420 10 N -0.312 5.312 11 C 0.096 3.904 12 C -0.586 4.586 13 H 0.101 0.899 14 C -0.125 4.125 15 N -0.525 5.525 16 Si 0.703 3.297 17 H -0.197 1.197 18 H -0.208 1.208 19 H -0.185 1.185 20 C -0.233 4.233 21 C -0.056 4.056 22 C -0.145 4.145 23 C -0.031 4.031 24 C -0.124 4.124 25 C -0.136 4.136 26 C -0.139 4.139 27 C -0.137 4.137 28 C -0.127 4.127 29 H 0.099 0.901 30 H 0.101 0.899 31 H 0.096 0.904 32 H 0.268 0.732 33 H 0.247 0.753 34 H 0.051 0.949 35 H 0.047 0.953 36 H 0.079 0.921 37 H 0.159 0.841 38 H 0.157 0.843 39 H 0.143 0.857 40 H 0.142 0.858 41 H 0.139 0.861 42 H 0.140 0.860 43 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -1.799 -31.349 -1.742 31.449 hybrid contribution 1.532 -0.354 -0.018 1.572 sum -0.267 -31.703 -1.760 31.753 Atomic orbital electron populations 1.20864 0.88457 1.03827 1.03289 1.21252 0.96867 0.86179 0.91651 1.67480 1.06921 1.28691 1.15883 1.18481 0.89009 0.85051 0.93351 1.43310 1.12037 1.02988 1.70558 1.20830 0.87843 0.85496 0.77839 1.90855 1.12821 1.86332 1.41321 1.19771 0.87547 0.85083 0.80308 1.90719 1.13176 1.87052 1.51013 1.46116 1.11549 1.06175 1.67408 1.19720 0.94292 0.79054 0.97289 1.21052 0.94217 0.89974 1.53402 0.89876 1.24782 0.98055 0.95856 0.93788 1.69875 1.33760 1.00360 1.48458 0.86821 0.85240 0.78696 0.78942 1.19747 1.20759 1.18501 1.21396 1.01128 0.91275 1.09499 1.21344 0.92958 0.97626 0.93696 1.19483 0.93553 0.93180 1.08301 1.18549 0.96060 0.92358 0.96161 1.21321 0.95370 0.97512 0.98192 1.21112 0.99863 0.93574 0.99093 1.21218 0.97752 0.99214 0.95765 1.21092 0.96400 0.97189 0.99036 1.21234 0.99983 0.93084 0.98382 0.90088 0.89916 0.90355 0.73170 0.75336 0.94888 0.95328 0.92120 0.84118 0.84285 0.85666 0.85838 0.86118 0.85958 0.85948 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.06 8.63 36.01 0.31 -0.75 16 2 C 0.18 2.18 6.78 -82.25 -0.56 1.62 16 3 N -0.47 -7.07 7.77 -8.36 -0.06 -7.13 16 4 C 0.37 4.92 7.42 -154.84 -1.15 3.78 16 5 N -0.64 -8.75 5.37 -11.85 -0.06 -8.81 16 6 C 0.50 8.50 7.84 -11.63 -0.09 8.41 16 7 O -0.45 -8.51 14.72 5.48 0.08 -8.43 16 8 C 0.49 9.49 7.89 -11.63 -0.09 9.40 16 9 O -0.54 -11.10 16.48 5.49 0.09 -11.01 16 10 N -0.66 -13.89 5.54 -61.94 -0.34 -14.23 16 11 C 0.22 5.24 4.50 -5.20 -0.02 5.22 16 12 C -0.55 -14.99 9.83 -34.45 -0.34 -15.33 16 13 H 0.08 2.40 7.84 -52.48 -0.41 1.99 16 14 C 0.08 2.23 5.47 -17.82 -0.10 2.13 16 15 N -0.89 -26.18 13.96 55.43 0.77 -25.41 16 16 Si 0.88 20.89 27.47 -169.99 -4.67 16.22 16 17 H -0.27 -6.37 7.11 56.52 0.40 -5.97 16 18 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 19 H -0.26 -6.08 6.54 56.52 0.37 -5.71 16 20 C -0.21 -2.02 9.92 -39.28 -0.39 -2.41 16 21 C -0.03 -0.27 9.67 -38.99 -0.38 -0.65 16 22 C -0.14 -1.41 5.49 -104.73 -0.57 -1.99 16 23 C -0.03 -0.26 4.72 -104.90 -0.49 -0.75 16 24 C -0.11 -0.82 7.92 -39.25 -0.31 -1.13 16 25 C -0.12 -0.78 10.03 -39.63 -0.40 -1.18 16 26 C -0.12 -0.75 10.04 -39.52 -0.40 -1.15 16 27 C -0.12 -0.76 10.03 -39.63 -0.40 -1.16 16 28 C -0.11 -0.80 9.54 -39.24 -0.37 -1.18 16 29 H 0.08 0.70 7.51 -51.93 -0.39 0.31 16 30 H 0.08 0.91 8.14 -51.93 -0.42 0.49 16 31 H 0.08 0.66 6.45 -51.93 -0.33 0.32 16 32 H 0.43 4.78 8.17 -40.82 -0.33 4.45 16 33 H 0.41 8.25 7.79 -40.82 -0.32 7.93 16 34 H 0.03 0.82 7.20 -51.93 -0.37 0.44 16 35 H 0.03 0.70 7.57 -51.93 -0.39 0.31 16 36 H 0.27 7.39 8.31 -40.82 -0.34 7.05 16 37 H 0.14 0.95 8.06 -52.48 -0.42 0.52 16 38 H 0.14 0.84 8.06 -52.49 -0.42 0.42 16 39 H 0.13 0.90 6.88 -52.48 -0.36 0.54 16 40 H 0.12 0.58 8.06 -52.49 -0.42 0.16 16 41 H 0.12 0.51 8.06 -52.49 -0.42 0.09 16 42 H 0.12 0.54 8.06 -52.49 -0.42 0.12 16 43 H 0.12 0.76 8.05 -52.49 -0.42 0.34 16 LS Contribution 371.98 15.07 5.61 5.61 Total: -1.00 -33.35 371.98 -9.38 -42.74 By element: Atomic # 1 Polarization: 12.63 SS G_CDS: -5.04 Total: 7.59 kcal Atomic # 6 Polarization: 8.63 SS G_CDS: -5.75 Total: 2.88 kcal Atomic # 7 Polarization: -55.89 SS G_CDS: 0.30 Total: -55.59 kcal Atomic # 8 Polarization: -19.61 SS G_CDS: 0.17 Total: -19.44 kcal Atomic # 14 Polarization: 20.89 SS G_CDS: -4.67 Total: 16.22 kcal Total LS contribution 5.61 Total: 5.61 kcal Total: -33.35 -9.38 -42.74 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000354365315.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.957 kcal (2) G-P(sol) polarization free energy of solvation -33.354 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.602 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.384 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.739 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.218 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds