Wall clock time and date at job start Tue Mar 31 2020 23:02:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 N 1.31761 * 119.65624 * 2 1 4 4 C 1.32416 * 121.75813 * 180.26705 * 3 2 1 5 5 N 1.39159 * 119.56665 * 179.74595 * 4 3 2 6 6 C 1.34775 * 119.99730 * 4.80402 * 5 4 3 7 7 O 1.21364 * 120.00360 * 354.90937 * 6 5 4 8 8 C 1.49357 * 119.99738 * 174.63552 * 6 5 4 9 9 O 1.21359 * 120.00262 * 0.26845 * 8 6 5 10 10 N 1.34780 * 120.00158 * 180.27488 * 8 6 5 11 11 C 1.46496 * 120.00317 * 179.97438 * 10 8 6 12 12 C 1.50689 * 109.47529 * 179.97438 * 11 10 8 13 13 H 1.08004 * 120.00087 * 0.02562 * 12 11 10 14 14 C 1.37878 * 120.00459 * 179.97438 * 12 11 10 15 15 N 1.31517 * 120.00206 * 180.02562 * 14 12 11 16 16 Si 1.86800 * 119.99941 * 0.02562 * 14 12 11 17 17 H 1.48499 * 109.46985 * 89.99740 * 16 14 12 18 18 H 1.48493 * 109.47111 * 210.00062 * 16 14 12 19 19 H 1.48500 * 109.47027 * 329.99768 * 16 14 12 20 20 C 1.39184 * 120.86604 * 359.47695 * 4 3 2 21 21 C 1.38114 * 119.22235 * 0.24967 * 20 4 3 22 22 C 1.39242 * 119.66026 * 179.74439 * 2 1 3 23 23 C 1.48347 * 120.46215 * 0.02562 * 22 2 1 24 24 C 1.39365 * 120.12325 * 309.70286 * 23 22 2 25 25 C 1.38008 * 119.87726 * 179.76751 * 24 23 22 26 26 C 1.38327 * 120.11986 * 0.51258 * 25 24 23 27 27 C 1.38325 * 120.25259 * 359.73609 * 26 25 24 28 28 C 1.38020 * 120.12082 * 0.02562 * 27 26 25 29 29 H 1.08998 * 109.47115 * 270.25110 * 1 2 3 30 30 H 1.09000 * 109.47205 * 30.25621 * 1 2 3 31 31 H 1.09002 * 109.46870 * 150.25564 * 1 2 3 32 32 H 0.97001 * 119.99891 * 184.79609 * 5 4 3 33 33 H 0.97000 * 119.99767 * 359.97438 * 10 8 6 34 34 H 1.09005 * 109.47066 * 300.00420 * 11 10 8 35 35 H 1.09005 * 109.46808 * 59.99707 * 11 10 8 36 36 H 0.97000 * 120.00217 * 179.97438 * 15 14 12 37 37 H 1.08003 * 120.38854 * 180.28020 * 20 4 3 38 38 H 1.07994 * 120.80509 * 180.02562 * 21 20 4 39 39 H 1.08003 * 120.05919 * 0.02562 * 24 23 22 40 40 H 1.07995 * 119.94082 * 180.22484 * 25 24 23 41 41 H 1.08001 * 119.87325 * 179.76588 * 26 25 24 42 42 H 1.07995 * 119.94149 * 179.97438 * 27 26 25 43 43 H 1.07999 * 120.06371 * 180.02562 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1590 1.1450 0.0000 4 6 3.4822 1.1936 -0.0052 5 7 4.1240 2.4283 -0.0104 6 6 3.4031 3.5629 0.0878 7 8 2.1905 3.5133 0.0875 8 6 4.0966 4.8806 0.2030 9 8 5.3092 4.9302 0.2034 10 7 3.3758 6.0147 0.3068 11 6 4.0560 7.3072 0.4204 12 6 3.0310 8.4072 0.5213 13 1 1.9781 8.1675 0.5032 14 6 3.4372 9.7196 0.6380 15 7 2.5426 10.6795 0.7266 16 14 5.2584 10.1343 0.6702 17 1 5.7370 10.3692 -0.7158 18 1 5.4729 11.3588 1.4823 19 1 6.0128 9.0043 1.2696 20 6 4.2397 0.0259 -0.0001 21 6 3.5953 -1.1957 0.0054 22 6 2.1961 -1.2100 0.0054 23 6 1.4571 -2.4963 0.0106 24 6 0.4406 -2.7152 0.9385 25 6 -0.2468 -3.9119 0.9357 26 6 0.0786 -4.8971 0.0209 27 6 1.0900 -4.6873 -0.8991 28 6 1.7808 -3.4925 -0.9085 29 1 -0.3633 0.0045 1.0276 30 1 -0.3633 0.8877 -0.5178 31 1 -0.3633 -0.8923 -0.5099 32 1 5.0902 2.4724 -0.0845 33 1 2.4066 5.9751 0.3062 34 1 4.6826 7.3109 1.3123 35 1 4.6771 7.4696 -0.4606 36 1 2.8284 11.6028 0.8091 37 1 5.3186 0.0745 0.0001 38 1 4.1578 -2.1176 0.0098 39 1 0.1886 -1.9481 1.6558 40 1 -1.0371 -4.0812 1.6519 41 1 -0.4594 -5.8336 0.0247 42 1 1.3402 -5.4602 -1.6107 43 1 2.5701 -3.3295 -1.6275 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000354365315.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:02:21 Heat of formation + Delta-G solvation = -17.426435 kcal Electronic energy + Delta-G solvation = -27178.475599 eV Core-core repulsion = 23188.119066 eV Total energy + Delta-G solvation = -3990.356533 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 339.137 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -42.29110 -41.25668 -39.95094 -39.24881 -36.89640 -36.07970 -34.46162 -34.13375 -33.51229 -31.76141 -30.53288 -30.25428 -28.62568 -26.61398 -24.75194 -23.66696 -23.45531 -23.06310 -22.16999 -21.50179 -20.13564 -18.79933 -18.64161 -18.12449 -17.42846 -17.24602 -17.17001 -16.67842 -16.63772 -16.07367 -15.90398 -15.56641 -15.24121 -15.08010 -14.98973 -14.78320 -14.43273 -14.27668 -14.11066 -14.01290 -13.75688 -13.58523 -13.34265 -13.14103 -13.02899 -12.79795 -12.70352 -12.09035 -12.00611 -11.92425 -11.71690 -11.69020 -11.06242 -10.94194 -10.85241 -10.24085 -10.20716 -9.87278 -9.78942 -8.98654 -8.40651 -6.50546 -0.39932 0.24951 0.30626 0.54461 0.75019 1.12318 1.36020 1.37639 1.49414 2.04967 2.28112 2.45739 2.71555 2.94046 2.95445 3.20816 3.46388 3.58343 3.80296 3.92981 4.02716 4.17406 4.21292 4.33076 4.54287 4.59136 4.62971 4.67805 4.68164 4.68878 4.75328 4.94061 5.01630 5.04953 5.11314 5.15300 5.16614 5.21540 5.22240 5.52718 5.66040 5.66898 5.67316 5.79838 5.99123 6.12024 6.35674 6.48935 6.63693 6.85978 7.09715 7.15780 8.74343 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.031599 B = 0.001898 C = 0.001810 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 885.902408 B =14748.059124 C =15461.920856 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.101 4.101 2 C 0.152 3.848 3 N -0.515 5.515 4 C 0.336 3.664 5 N -0.625 5.625 6 C 0.508 3.492 7 O -0.475 6.475 8 C 0.501 3.499 9 O -0.550 6.550 10 N -0.672 5.672 11 C 0.229 3.771 12 C -0.557 4.557 13 H 0.053 0.947 14 C 0.025 3.975 15 N -0.931 5.931 16 Si 0.945 3.055 17 H -0.262 1.262 18 H -0.274 1.274 19 H -0.251 1.251 20 C -0.190 4.190 21 C -0.030 4.030 22 C -0.127 4.127 23 C -0.049 4.049 24 C -0.116 4.116 25 C -0.125 4.125 26 C -0.122 4.122 27 C -0.123 4.123 28 C -0.113 4.113 29 H 0.088 0.912 30 H 0.063 0.937 31 H 0.091 0.909 32 H 0.440 0.560 33 H 0.413 0.587 34 H 0.031 0.969 35 H 0.030 0.970 36 H 0.274 0.726 37 H 0.175 0.825 38 H 0.174 0.826 39 H 0.123 0.877 40 H 0.140 0.860 41 H 0.142 0.858 42 H 0.143 0.857 43 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.618 -35.860 -2.027 35.923 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.014 3.986 3 N -0.230 5.230 4 C 0.106 3.894 5 N -0.275 5.275 6 C 0.288 3.712 7 O -0.344 6.344 8 C 0.280 3.720 9 O -0.429 6.429 10 N -0.322 5.322 11 C 0.107 3.893 12 C -0.595 4.595 13 H 0.071 0.929 14 C -0.176 4.176 15 N -0.570 5.570 16 Si 0.767 3.233 17 H -0.187 1.187 18 H -0.199 1.199 19 H -0.175 1.175 20 C -0.213 4.213 21 C -0.055 4.055 22 C -0.131 4.131 23 C -0.050 4.050 24 C -0.134 4.134 25 C -0.142 4.142 26 C -0.140 4.140 27 C -0.141 4.141 28 C -0.131 4.131 29 H 0.106 0.894 30 H 0.082 0.918 31 H 0.110 0.890 32 H 0.282 0.718 33 H 0.249 0.751 34 H 0.049 0.951 35 H 0.048 0.952 36 H 0.083 0.917 37 H 0.192 0.808 38 H 0.191 0.809 39 H 0.141 0.859 40 H 0.158 0.842 41 H 0.160 0.840 42 H 0.161 0.839 43 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges 0.111 -34.721 -1.984 34.778 hybrid contribution 0.836 0.440 0.050 0.946 sum 0.948 -34.282 -1.934 34.349 Atomic orbital electron populations 1.20842 0.87856 1.03465 1.03657 1.21522 0.97573 0.86433 0.93104 1.67314 1.08311 1.30576 1.16841 1.18751 0.89160 0.85412 0.96075 1.43082 1.12352 1.02408 1.69612 1.20276 0.87378 0.85422 0.78130 1.90853 1.13720 1.86544 1.43274 1.20088 0.87316 0.85503 0.79044 1.90699 1.13657 1.87437 1.51146 1.45973 1.11693 1.05973 1.68520 1.19391 0.93319 0.79515 0.97094 1.21254 0.93709 0.91392 1.53126 0.92928 1.25690 1.02992 0.95647 0.93229 1.69999 1.36217 1.00995 1.49744 0.85756 0.79210 0.78819 0.79523 1.18683 1.19936 1.17475 1.21732 1.02586 0.90036 1.06905 1.21778 0.92629 0.98597 0.92532 1.19708 0.94371 0.93072 1.05911 1.18557 0.96869 0.92098 0.97435 1.21407 0.95518 0.98128 0.98317 1.21361 1.00079 0.93212 0.99593 1.21558 0.97506 0.99857 0.95082 1.21392 0.96074 0.97309 0.99339 1.21403 1.00397 0.93088 0.98214 0.89386 0.91825 0.88995 0.71827 0.75126 0.95097 0.95172 0.91714 0.80787 0.80878 0.85901 0.84234 0.84002 0.83878 0.84890 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -2.07 8.63 71.24 0.61 -1.46 16 2 C 0.15 3.69 6.78 42.81 0.29 3.99 16 3 N -0.51 -15.59 7.77 -180.38 -1.40 -16.99 16 4 C 0.34 8.65 7.42 133.02 0.99 9.63 16 5 N -0.62 -16.70 5.37 -309.76 -1.66 -18.37 16 6 C 0.51 17.50 7.84 87.24 0.68 18.18 16 7 O -0.47 -18.74 14.72 -3.29 -0.05 -18.79 16 8 C 0.50 19.27 7.89 87.24 0.69 19.96 16 9 O -0.55 -22.14 16.48 -3.28 -0.05 -22.20 16 10 N -0.67 -28.69 5.54 -468.24 -2.59 -31.29 16 11 C 0.23 11.08 4.50 85.63 0.38 11.47 16 12 C -0.56 -31.22 9.83 25.60 0.25 -30.97 16 13 H 0.05 3.19 7.84 -2.91 -0.02 3.16 16 14 C 0.02 1.41 5.47 84.65 0.46 1.87 16 15 N -0.93 -56.07 13.96 21.45 0.30 -55.78 16 16 Si 0.94 42.86 27.47 68.60 1.88 44.75 16 17 H -0.26 -11.43 7.11 99.48 0.71 -10.73 16 18 H -0.27 -12.03 7.11 99.48 0.71 -11.32 16 19 H -0.25 -10.93 6.54 99.48 0.65 -10.27 16 20 C -0.19 -3.19 9.92 22.47 0.22 -2.97 16 21 C -0.03 -0.44 9.67 22.65 0.22 -0.22 16 22 C -0.13 -2.36 5.49 -19.93 -0.11 -2.47 16 23 C -0.05 -0.74 4.72 -20.04 -0.09 -0.84 16 24 C -0.12 -1.63 7.92 22.49 0.18 -1.46 16 25 C -0.12 -1.38 10.03 22.24 0.22 -1.16 16 26 C -0.12 -1.17 10.04 22.31 0.22 -0.95 16 27 C -0.12 -1.22 10.03 22.24 0.22 -0.99 16 28 C -0.11 -1.38 9.54 22.49 0.21 -1.17 16 29 H 0.09 1.59 7.51 -2.39 -0.02 1.58 16 30 H 0.06 1.51 8.14 -2.39 -0.02 1.49 16 31 H 0.09 1.55 6.45 -2.39 -0.02 1.54 16 32 H 0.44 9.21 8.17 -92.71 -0.76 8.45 16 33 H 0.41 17.32 7.79 -92.71 -0.72 16.59 16 34 H 0.03 1.52 7.20 -2.38 -0.02 1.50 16 35 H 0.03 1.46 7.57 -2.38 -0.02 1.44 16 36 H 0.27 15.26 8.31 -92.71 -0.77 14.49 16 37 H 0.17 1.66 8.06 -2.91 -0.02 1.63 16 38 H 0.17 1.36 8.06 -2.91 -0.02 1.33 16 39 H 0.12 1.71 6.88 -2.91 -0.02 1.69 16 40 H 0.14 1.02 8.06 -2.91 -0.02 0.99 16 41 H 0.14 0.72 8.06 -2.91 -0.02 0.69 16 42 H 0.14 0.77 8.06 -2.91 -0.02 0.75 16 43 H 0.13 1.27 8.05 -2.91 -0.02 1.24 16 Total: -1.00 -73.58 371.98 1.63 -71.95 By element: Atomic # 1 Polarization: 26.71 SS G_CDS: -0.46 Total: 26.26 kcal Atomic # 6 Polarization: 14.79 SS G_CDS: 5.66 Total: 20.45 kcal Atomic # 7 Polarization: -117.06 SS G_CDS: -5.36 Total: -122.42 kcal Atomic # 8 Polarization: -40.89 SS G_CDS: -0.10 Total: -40.99 kcal Atomic # 14 Polarization: 42.86 SS G_CDS: 1.88 Total: 44.75 kcal Total: -73.58 1.63 -71.95 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000354365315.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.526 kcal (2) G-P(sol) polarization free energy of solvation -73.582 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.056 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.630 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.953 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.426 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds