Wall clock time and date at job start Tue Mar 31 2020 22:08:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31412 * 1 3 3 Si 1.86804 * 120.00054 * 2 1 4 4 H 1.48501 * 109.47072 * 180.02562 * 3 2 1 5 5 H 1.48498 * 109.47055 * 300.00166 * 3 2 1 6 6 H 1.48504 * 109.46849 * 59.99970 * 3 2 1 7 7 C 1.38955 * 120.00113 * 180.02562 * 2 1 3 8 8 H 1.07994 * 119.99898 * 179.97438 * 7 2 1 9 9 N 1.37096 * 119.99752 * 359.97438 * 7 2 1 10 10 C 1.34777 * 119.99731 * 179.97438 * 9 7 2 11 11 O 1.21291 * 120.00229 * 0.02562 * 10 9 7 12 12 C 1.50701 * 119.99780 * 180.02562 * 10 9 7 13 13 N 1.46501 * 109.47130 * 179.97438 * 12 10 9 14 14 C 1.34772 * 119.99958 * 179.97438 * 13 12 10 15 15 O 1.21585 * 120.00576 * 0.02562 * 14 13 12 16 16 N 1.34786 * 119.99903 * 180.02562 * 14 13 12 17 17 C 1.46495 * 119.99793 * 359.97438 * 16 14 13 18 18 C 1.52993 * 109.47408 * 270.00221 * 17 16 14 19 19 O 1.42900 * 109.47533 * 65.00294 * 18 17 16 20 20 C 1.46496 * 119.99943 * 180.02562 * 16 14 13 21 21 C 1.50698 * 109.47266 * 89.99782 * 20 16 14 22 22 C 1.38271 * 119.98983 * 270.25508 * 21 20 16 23 23 C 1.38219 * 120.05279 * 180.25774 * 22 21 20 24 24 C 1.38227 * 120.02402 * 359.48356 * 23 22 21 25 25 C 1.38435 * 119.97416 * 0.26250 * 24 23 22 26 26 F 1.35097 * 120.02437 * 179.97438 * 25 24 23 27 27 C 1.38179 * 119.98470 * 90.00006 * 21 20 16 28 28 H 0.96997 * 119.99947 * 359.97438 * 1 2 3 29 29 H 0.97002 * 120.00022 * 0.02562 * 9 7 2 30 30 H 1.09000 * 109.47047 * 60.00298 * 12 10 9 31 31 H 1.09001 * 109.47276 * 299.99965 * 12 10 9 32 32 H 0.96999 * 119.99480 * 359.97438 * 13 12 10 33 33 H 1.09008 * 109.47145 * 30.00635 * 17 16 14 34 34 H 1.09001 * 109.46656 * 149.99902 * 17 16 14 35 35 H 1.09003 * 109.47115 * 185.00139 * 18 17 16 36 36 H 1.08998 * 109.47303 * 305.00060 * 18 17 16 37 37 H 0.96692 * 114.00620 * 180.02562 * 19 18 17 38 38 H 1.09007 * 109.46983 * 329.99845 * 20 16 14 39 39 H 1.08994 * 109.46978 * 209.99955 * 20 16 14 40 40 H 1.08000 * 119.97479 * 0.02562 * 22 21 20 41 41 H 1.08002 * 119.99072 * 179.76964 * 23 22 21 42 42 H 1.07999 * 120.01289 * 180.23490 * 24 23 22 43 43 H 1.07994 * 120.01414 * 0.02562 * 27 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2482 1.6178 0.0000 4 1 3.7082 1.3464 -0.0006 5 1 1.8894 2.3965 -1.2125 6 1 1.8894 2.3964 1.2125 7 6 2.0089 -1.2034 -0.0005 8 1 3.0889 -1.2033 -0.0010 9 7 1.3234 -2.3906 -0.0005 10 6 1.9973 -3.5578 -0.0016 11 8 3.2102 -3.5578 -0.0021 12 6 1.2438 -4.8629 -0.0022 13 7 2.1958 -5.9765 -0.0039 14 6 1.7465 -7.2471 -0.0042 15 8 0.5512 -7.4694 -0.0034 16 7 2.6224 -8.2716 -0.0052 17 6 4.0627 -8.0038 -0.0067 18 6 4.5626 -7.9103 -1.4496 19 8 3.9673 -6.7788 -2.0877 20 6 2.1340 -9.6527 -0.0061 21 6 1.9660 -10.1253 -1.4272 22 6 0.7616 -9.9381 -2.0799 23 6 0.6043 -10.3757 -3.3815 24 6 1.6547 -10.9917 -4.0358 25 6 2.8627 -11.1750 -3.3850 26 9 3.8898 -11.7773 -4.0233 27 6 3.0174 -10.7408 -2.0791 28 1 -0.4850 0.8400 0.0004 29 1 0.3534 -2.3906 -0.0005 30 1 0.6168 -4.9201 -0.8920 31 1 0.6175 -4.9213 0.8880 32 1 3.1494 -5.7991 -0.0049 33 1 4.2578 -7.0625 0.5072 34 1 4.5830 -8.8126 0.5065 35 1 5.6470 -7.7999 -1.4519 36 1 4.2886 -8.8173 -1.9886 37 1 4.2394 -6.6576 -3.0076 38 1 1.1740 -9.6990 0.5081 39 1 2.8522 -10.2923 0.5070 40 1 -0.0582 -9.4528 -1.5711 41 1 -0.3381 -10.2323 -3.8892 42 1 1.5328 -11.3302 -5.0541 43 1 3.9593 -10.8836 -1.5704 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000358314471.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:08:23 Heat of formation + Delta-G solvation = -124.637436 kcal Electronic energy + Delta-G solvation = -29606.536219 eV Core-core repulsion = 25180.761443 eV Total energy + Delta-G solvation = -4425.774775 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.143 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -49.11259 -40.39104 -39.06048 -38.12063 -37.02518 -35.26735 -34.34666 -33.60880 -31.98310 -31.28493 -30.79786 -29.28185 -27.86078 -25.88704 -24.26390 -23.01431 -22.94617 -21.90178 -19.58465 -19.53650 -18.34032 -17.79707 -17.69779 -17.48067 -16.46271 -16.36239 -16.09943 -15.79347 -15.60720 -15.49502 -14.72213 -14.59346 -14.47821 -14.30620 -14.00303 -13.83108 -13.62127 -13.46699 -13.30617 -13.17645 -12.71578 -12.35576 -12.12178 -11.97245 -11.89448 -11.67908 -11.58585 -11.57108 -11.25110 -11.10233 -10.37365 -10.27381 -10.10454 -9.88102 -9.58292 -9.18485 -8.89825 -8.83439 -8.52315 -8.37645 -8.02884 -6.45738 -3.87187 0.89482 0.98310 2.74564 3.13764 3.25095 3.31871 3.45713 3.48558 3.84049 3.98205 4.08549 4.17790 4.25263 4.45376 4.52594 4.77303 4.88280 4.95863 5.03115 5.06268 5.06753 5.18566 5.23236 5.26639 5.33669 5.49020 5.62375 5.67103 5.83791 5.87645 5.99387 6.11432 6.14745 6.17680 6.30517 6.47358 6.68857 6.94046 7.08260 7.51564 7.63454 7.99426 8.31777 8.53154 8.91546 9.11363 9.47267 9.95864 10.71574 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.019882 B = 0.002442 C = 0.002401 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1407.942792 B =11462.990819 C =11660.845713 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.897 5.897 2 C 0.024 3.976 3 Si 0.931 3.069 4 H -0.268 1.268 5 H -0.281 1.281 6 H -0.281 1.281 7 C -0.301 4.301 8 H 0.105 0.895 9 N -0.553 5.553 10 C 0.433 3.567 11 O -0.593 6.593 12 C 0.129 3.871 13 N -0.710 5.710 14 C 0.716 3.284 15 O -0.601 6.601 16 N -0.623 5.623 17 C 0.108 3.892 18 C 0.048 3.952 19 O -0.555 6.555 20 C 0.172 3.828 21 C -0.073 4.073 22 C -0.098 4.098 23 C -0.093 4.093 24 C -0.153 4.153 25 C 0.088 3.912 26 F -0.144 7.144 27 C -0.144 4.144 28 H 0.273 0.727 29 H 0.395 0.605 30 H 0.079 0.921 31 H 0.079 0.921 32 H 0.411 0.589 33 H 0.088 0.912 34 H 0.093 0.907 35 H 0.051 0.949 36 H 0.051 0.949 37 H 0.377 0.623 38 H 0.099 0.901 39 H 0.085 0.915 40 H 0.139 0.861 41 H 0.132 0.868 42 H 0.132 0.868 43 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.864 -22.816 -3.949 23.660 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.537 5.537 2 C -0.178 4.178 3 Si 0.758 3.242 4 H -0.192 1.192 5 H -0.207 1.207 6 H -0.207 1.207 7 C -0.431 4.431 8 H 0.123 0.877 9 N -0.189 5.189 10 C 0.219 3.781 11 O -0.479 6.479 12 C 0.000 4.000 13 N -0.367 5.367 14 C 0.417 3.583 15 O -0.480 6.480 16 N -0.360 5.360 17 C -0.015 4.015 18 C -0.031 4.031 19 O -0.359 6.359 20 C 0.048 3.952 21 C -0.075 4.075 22 C -0.117 4.117 23 C -0.111 4.111 24 C -0.172 4.172 25 C 0.069 3.931 26 F -0.123 7.123 27 C -0.163 4.163 28 H 0.082 0.918 29 H 0.229 0.771 30 H 0.097 0.903 31 H 0.097 0.903 32 H 0.251 0.749 33 H 0.106 0.894 34 H 0.111 0.889 35 H 0.069 0.931 36 H 0.069 0.931 37 H 0.224 0.776 38 H 0.117 0.883 39 H 0.103 0.897 40 H 0.157 0.843 41 H 0.150 0.850 42 H 0.150 0.850 43 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges 4.436 -22.692 -3.344 23.362 hybrid contribution 0.815 0.764 -0.916 1.445 sum 5.251 -21.928 -4.260 22.947 Atomic orbital electron populations 1.69625 1.05971 1.28256 1.49870 1.25305 0.95650 0.99832 0.97059 0.85779 0.79668 0.80992 0.77761 1.19194 1.20691 1.20683 1.19758 0.93422 0.82045 1.47865 0.87733 1.41792 1.09427 1.04441 1.63223 1.19790 0.88316 0.84999 0.85030 1.90493 1.13744 1.86863 1.56824 1.20749 0.91346 0.85154 1.02754 1.44810 1.11489 1.02917 1.77531 1.15663 0.84593 0.80649 0.77402 1.90852 1.13833 1.84121 1.59220 1.46931 1.05268 1.04633 1.79134 1.21671 0.81186 1.03090 0.95598 1.22801 0.96224 0.89668 0.94453 1.86609 1.71740 1.47506 1.30076 1.20216 1.02118 0.81152 0.91686 1.20209 0.93086 0.96688 0.97534 1.21369 0.97996 0.97693 0.94628 1.21079 0.98520 0.96781 0.94750 1.21158 0.92439 1.02612 1.01023 1.17651 0.85273 0.98530 0.91669 1.91489 1.57692 1.81239 1.81834 1.20963 1.00076 1.01709 0.93545 0.91753 0.77105 0.90300 0.90317 0.74895 0.89430 0.88859 0.93102 0.93096 0.77590 0.88291 0.89650 0.84339 0.85004 0.85034 0.85058 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -24.27 13.05 55.50 0.72 -23.54 16 2 C 0.02 0.63 5.50 -17.47 -0.10 0.54 16 3 Si 0.93 20.78 29.55 -169.99 -5.02 15.75 16 4 H -0.27 -5.95 7.11 56.52 0.40 -5.55 16 5 H -0.28 -6.18 7.11 56.52 0.40 -5.78 16 6 H -0.28 -6.17 7.11 56.52 0.40 -5.77 16 7 C -0.30 -8.30 9.68 -14.93 -0.14 -8.45 16 8 H 0.10 3.01 7.16 -52.49 -0.38 2.63 16 9 N -0.55 -14.01 5.29 -10.96 -0.06 -14.06 16 10 C 0.43 10.23 7.85 -10.98 -0.09 10.15 16 11 O -0.59 -15.56 15.24 5.55 0.08 -15.47 16 12 C 0.13 2.51 6.15 -5.19 -0.03 2.48 16 13 N -0.71 -12.73 4.79 -66.41 -0.32 -13.05 16 14 C 0.72 11.89 7.90 -86.91 -0.69 11.21 16 15 O -0.60 -11.35 15.42 5.29 0.08 -11.26 16 16 N -0.62 -7.65 2.44 -180.81 -0.44 -8.09 16 17 C 0.11 1.09 5.76 -4.05 -0.02 1.06 16 18 C 0.05 0.47 7.39 37.15 0.27 0.75 16 19 O -0.55 -7.25 11.78 -35.23 -0.42 -7.66 16 20 C 0.17 1.69 5.57 -5.20 -0.03 1.66 16 21 C -0.07 -0.75 5.30 -104.63 -0.55 -1.30 16 22 C -0.10 -1.09 9.70 -39.58 -0.38 -1.47 16 23 C -0.09 -0.90 10.04 -39.59 -0.40 -1.30 16 24 C -0.15 -1.45 10.03 -39.51 -0.40 -1.84 16 25 C 0.09 0.88 7.30 -39.42 -0.29 0.60 16 26 F -0.14 -1.53 17.27 2.25 0.04 -1.49 16 27 C -0.14 -1.33 7.44 -39.51 -0.29 -1.62 16 28 H 0.27 6.95 8.31 -40.82 -0.34 6.61 16 29 H 0.40 9.65 7.90 -40.82 -0.32 9.33 16 30 H 0.08 1.51 8.14 -51.93 -0.42 1.09 16 31 H 0.08 1.47 8.14 -51.93 -0.42 1.04 16 32 H 0.41 7.50 4.37 -40.82 -0.18 7.32 16 33 H 0.09 1.01 6.36 -51.92 -0.33 0.68 16 34 H 0.09 0.60 7.89 -51.93 -0.41 0.19 16 35 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 36 H 0.05 0.48 5.15 -51.93 -0.27 0.21 16 37 H 0.38 3.67 9.12 45.56 0.42 4.09 16 38 H 0.10 1.07 7.36 -51.93 -0.38 0.69 16 39 H 0.09 0.57 7.84 -51.93 -0.41 0.16 16 40 H 0.14 1.69 7.55 -52.49 -0.40 1.30 16 41 H 0.13 1.01 8.06 -52.49 -0.42 0.59 16 42 H 0.13 1.00 8.06 -52.49 -0.42 0.58 16 43 H 0.13 0.96 7.81 -52.49 -0.41 0.55 16 LS Contribution 369.14 15.07 5.56 5.56 Total: -1.00 -33.70 369.14 -7.21 -40.91 By element: Atomic # 1 Polarization: 24.26 SS G_CDS: -4.31 Total: 19.95 kcal Atomic # 6 Polarization: 15.59 SS G_CDS: -3.14 Total: 12.46 kcal Atomic # 7 Polarization: -58.65 SS G_CDS: -0.09 Total: -58.74 kcal Atomic # 8 Polarization: -34.15 SS G_CDS: -0.25 Total: -34.40 kcal Atomic # 9 Polarization: -1.53 SS G_CDS: 0.04 Total: -1.49 kcal Atomic # 14 Polarization: 20.78 SS G_CDS: -5.02 Total: 15.75 kcal Total LS contribution 5.56 Total: 5.56 kcal Total: -33.70 -7.21 -40.91 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000358314471.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -83.725 kcal (2) G-P(sol) polarization free energy of solvation -33.699 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -117.424 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.214 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.913 kcal (6) G-S(sol) free energy of system = (1) + (5) -124.637 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds