Wall clock time and date at job start Tue Mar 31 2020 22:08:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31412 * 1 3 3 Si 1.86804 * 120.00054 * 2 1 4 4 H 1.48501 * 109.47072 * 180.02562 * 3 2 1 5 5 H 1.48498 * 109.47055 * 300.00166 * 3 2 1 6 6 H 1.48504 * 109.46849 * 59.99970 * 3 2 1 7 7 C 1.38955 * 120.00113 * 180.02562 * 2 1 3 8 8 H 1.07994 * 119.99898 * 179.97438 * 7 2 1 9 9 N 1.37096 * 119.99752 * 359.97438 * 7 2 1 10 10 C 1.34777 * 119.99731 * 179.97438 * 9 7 2 11 11 O 1.21291 * 120.00229 * 0.02562 * 10 9 7 12 12 C 1.50701 * 119.99780 * 180.02562 * 10 9 7 13 13 N 1.46501 * 109.47130 * 179.97438 * 12 10 9 14 14 C 1.34772 * 119.99958 * 179.97438 * 13 12 10 15 15 O 1.21585 * 120.00576 * 0.02562 * 14 13 12 16 16 N 1.34786 * 119.99903 * 180.02562 * 14 13 12 17 17 C 1.46495 * 119.99793 * 359.97438 * 16 14 13 18 18 C 1.52993 * 109.47408 * 270.00221 * 17 16 14 19 19 O 1.42900 * 109.47533 * 65.00294 * 18 17 16 20 20 C 1.46496 * 119.99943 * 180.02562 * 16 14 13 21 21 C 1.50698 * 109.47266 * 89.99782 * 20 16 14 22 22 C 1.38271 * 119.98983 * 270.25508 * 21 20 16 23 23 C 1.38219 * 120.05279 * 180.25774 * 22 21 20 24 24 C 1.38227 * 120.02402 * 359.48356 * 23 22 21 25 25 C 1.38435 * 119.97416 * 0.26250 * 24 23 22 26 26 F 1.35097 * 120.02437 * 179.97438 * 25 24 23 27 27 C 1.38179 * 119.98470 * 90.00006 * 21 20 16 28 28 H 0.96997 * 119.99947 * 359.97438 * 1 2 3 29 29 H 0.97002 * 120.00022 * 0.02562 * 9 7 2 30 30 H 1.09000 * 109.47047 * 60.00298 * 12 10 9 31 31 H 1.09001 * 109.47276 * 299.99965 * 12 10 9 32 32 H 0.96999 * 119.99480 * 359.97438 * 13 12 10 33 33 H 1.09008 * 109.47145 * 30.00635 * 17 16 14 34 34 H 1.09001 * 109.46656 * 149.99902 * 17 16 14 35 35 H 1.09003 * 109.47115 * 185.00139 * 18 17 16 36 36 H 1.08998 * 109.47303 * 305.00060 * 18 17 16 37 37 H 0.96692 * 114.00620 * 180.02562 * 19 18 17 38 38 H 1.09007 * 109.46983 * 329.99845 * 20 16 14 39 39 H 1.08994 * 109.46978 * 209.99955 * 20 16 14 40 40 H 1.08000 * 119.97479 * 0.02562 * 22 21 20 41 41 H 1.08002 * 119.99072 * 179.76964 * 23 22 21 42 42 H 1.07999 * 120.01289 * 180.23490 * 24 23 22 43 43 H 1.07994 * 120.01414 * 0.02562 * 27 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2482 1.6178 0.0000 4 1 3.7082 1.3464 -0.0006 5 1 1.8894 2.3965 -1.2125 6 1 1.8894 2.3964 1.2125 7 6 2.0089 -1.2034 -0.0005 8 1 3.0889 -1.2033 -0.0010 9 7 1.3234 -2.3906 -0.0005 10 6 1.9973 -3.5578 -0.0016 11 8 3.2102 -3.5578 -0.0021 12 6 1.2438 -4.8629 -0.0022 13 7 2.1958 -5.9765 -0.0039 14 6 1.7465 -7.2471 -0.0042 15 8 0.5512 -7.4694 -0.0034 16 7 2.6224 -8.2716 -0.0052 17 6 4.0627 -8.0038 -0.0067 18 6 4.5626 -7.9103 -1.4496 19 8 3.9673 -6.7788 -2.0877 20 6 2.1340 -9.6527 -0.0061 21 6 1.9660 -10.1253 -1.4272 22 6 0.7616 -9.9381 -2.0799 23 6 0.6043 -10.3757 -3.3815 24 6 1.6547 -10.9917 -4.0358 25 6 2.8627 -11.1750 -3.3850 26 9 3.8898 -11.7773 -4.0233 27 6 3.0174 -10.7408 -2.0791 28 1 -0.4850 0.8400 0.0004 29 1 0.3534 -2.3906 -0.0005 30 1 0.6168 -4.9201 -0.8920 31 1 0.6175 -4.9213 0.8880 32 1 3.1494 -5.7991 -0.0049 33 1 4.2578 -7.0625 0.5072 34 1 4.5830 -8.8126 0.5065 35 1 5.6470 -7.7999 -1.4519 36 1 4.2886 -8.8173 -1.9886 37 1 4.2394 -6.6576 -3.0076 38 1 1.1740 -9.6990 0.5081 39 1 2.8522 -10.2923 0.5070 40 1 -0.0582 -9.4528 -1.5711 41 1 -0.3381 -10.2323 -3.8892 42 1 1.5328 -11.3302 -5.0541 43 1 3.9593 -10.8836 -1.5704 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000358314471.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:08:22 Heat of formation + Delta-G solvation = -149.403085 kcal Electronic energy + Delta-G solvation = -29607.610138 eV Core-core repulsion = 25180.761443 eV Total energy + Delta-G solvation = -4426.848695 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.143 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -49.89031 -41.51451 -40.26113 -39.67497 -37.99934 -36.35062 -36.10410 -35.21957 -33.35446 -32.80565 -31.55726 -30.15791 -29.33678 -27.14346 -25.95128 -23.90977 -23.70466 -22.74290 -21.33857 -20.80359 -20.08677 -19.27206 -18.55530 -18.33256 -17.46371 -17.31238 -17.12490 -17.07460 -16.82514 -16.59107 -16.46092 -15.96391 -15.89616 -15.51719 -15.14934 -14.96626 -14.90833 -14.45958 -14.32526 -14.17370 -13.84630 -13.54086 -13.52030 -13.41777 -13.13394 -12.90066 -12.75160 -12.57277 -12.46926 -12.42084 -12.10290 -11.97464 -11.55465 -11.22380 -10.89468 -10.50261 -10.17183 -10.06254 -9.90902 -9.67349 -9.50908 -8.48826 -5.98639 0.12823 0.22677 1.36335 1.43016 1.56920 1.67572 1.93527 2.23009 2.29459 2.63513 2.96202 3.18316 3.22628 3.26429 3.44897 3.72421 3.80978 4.08292 4.12964 4.22355 4.25677 4.27638 4.32651 4.43469 4.48175 4.50515 4.58735 4.60949 4.74822 4.87938 4.91253 5.08050 5.12535 5.35976 5.39479 5.48495 5.49676 5.61480 5.93689 5.93953 5.96004 6.51532 6.87903 7.03660 7.06475 7.46055 7.63317 7.98453 8.68656 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.019882 B = 0.002442 C = 0.002401 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1407.942792 B =11462.990819 C =11660.845713 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.918 5.918 2 C -0.012 4.012 3 Si 0.997 3.003 4 H -0.270 1.270 5 H -0.272 1.272 6 H -0.271 1.271 7 C -0.334 4.334 8 H 0.085 0.915 9 N -0.562 5.562 10 C 0.437 3.563 11 O -0.619 6.619 12 C 0.142 3.858 13 N -0.714 5.714 14 C 0.711 3.289 15 O -0.629 6.629 16 N -0.613 5.613 17 C 0.101 3.899 18 C 0.047 3.953 19 O -0.588 6.588 20 C 0.169 3.831 21 C -0.079 4.079 22 C -0.117 4.117 23 C -0.098 4.098 24 C -0.155 4.155 25 C 0.076 3.924 26 F -0.147 7.147 27 C -0.135 4.135 28 H 0.279 0.721 29 H 0.398 0.602 30 H 0.082 0.918 31 H 0.089 0.911 32 H 0.410 0.590 33 H 0.069 0.931 34 H 0.139 0.861 35 H 0.073 0.927 36 H 0.058 0.942 37 H 0.387 0.613 38 H 0.085 0.915 39 H 0.127 0.873 40 H 0.119 0.881 41 H 0.146 0.854 42 H 0.148 0.852 43 H 0.157 0.843 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.107 -23.834 -4.021 24.930 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.558 5.558 2 C -0.213 4.213 3 Si 0.820 3.180 4 H -0.194 1.194 5 H -0.197 1.197 6 H -0.196 1.196 7 C -0.463 4.463 8 H 0.103 0.897 9 N -0.198 5.198 10 C 0.224 3.776 11 O -0.507 6.507 12 C 0.013 3.987 13 N -0.372 5.372 14 C 0.412 3.588 15 O -0.511 6.511 16 N -0.349 5.349 17 C -0.021 4.021 18 C -0.032 4.032 19 O -0.395 6.395 20 C 0.046 3.954 21 C -0.081 4.081 22 C -0.136 4.136 23 C -0.116 4.116 24 C -0.174 4.174 25 C 0.057 3.943 26 F -0.126 7.126 27 C -0.154 4.154 28 H 0.089 0.911 29 H 0.232 0.768 30 H 0.100 0.900 31 H 0.107 0.893 32 H 0.250 0.750 33 H 0.088 0.912 34 H 0.157 0.843 35 H 0.091 0.909 36 H 0.077 0.923 37 H 0.236 0.764 38 H 0.103 0.897 39 H 0.145 0.855 40 H 0.137 0.863 41 H 0.164 0.836 42 H 0.166 0.834 43 H 0.174 0.826 Dipole moment (debyes) X Y Z Total from point charges 5.691 -23.759 -3.424 24.670 hybrid contribution 0.434 0.983 -0.922 1.416 sum 6.125 -22.777 -4.346 23.983 Atomic orbital electron populations 1.69693 1.07014 1.29478 1.49664 1.26129 0.96539 1.02649 0.95944 0.84813 0.78126 0.76746 0.78289 1.19422 1.19678 1.19602 1.19755 0.92887 0.83535 1.50114 0.89678 1.41837 1.09498 1.04578 1.63879 1.20404 0.88130 0.85845 0.83215 1.90465 1.15139 1.87519 1.57572 1.20520 0.91161 0.83624 1.03353 1.44765 1.10979 1.03136 1.78330 1.15849 0.84825 0.80887 0.77232 1.90832 1.15269 1.84524 1.60459 1.46974 1.05804 1.04462 1.77623 1.21992 0.79926 1.04030 0.96198 1.22945 0.97325 0.88962 0.93948 1.86575 1.72701 1.49012 1.31171 1.20454 1.02789 0.80222 0.91897 1.20219 0.93051 0.97116 0.97680 1.21391 0.98193 0.98548 0.95447 1.21248 0.99397 0.96578 0.94364 1.21381 0.92136 1.02042 1.01812 1.17843 0.85387 0.98871 0.92180 1.91483 1.57816 1.81349 1.81947 1.21127 1.00588 1.00524 0.93195 0.91141 0.76830 0.89952 0.89315 0.75000 0.91238 0.84342 0.90924 0.92343 0.76435 0.89676 0.85477 0.86291 0.83588 0.83374 0.82568 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -49.58 13.05 21.66 0.28 -49.29 16 2 C -0.01 -0.66 5.50 84.93 0.47 -0.19 16 3 Si 1.00 42.32 29.55 68.60 2.03 44.34 16 4 H -0.27 -11.45 7.11 99.48 0.71 -10.74 16 5 H -0.27 -11.07 7.11 99.48 0.71 -10.36 16 6 H -0.27 -11.02 7.11 99.48 0.71 -10.31 16 7 C -0.33 -18.73 9.68 84.04 0.81 -17.91 16 8 H 0.09 5.03 7.16 -2.91 -0.02 5.01 16 9 N -0.56 -29.08 5.29 -306.99 -1.62 -30.70 16 10 C 0.44 21.07 7.85 87.66 0.69 21.76 16 11 O -0.62 -33.16 15.24 -3.06 -0.05 -33.20 16 12 C 0.14 5.63 6.15 85.63 0.53 6.16 16 13 N -0.71 -25.72 4.79 -482.29 -2.31 -28.03 16 14 C 0.71 23.46 7.90 179.05 1.41 24.87 16 15 O -0.63 -24.01 15.42 -3.98 -0.06 -24.07 16 16 N -0.61 -14.12 2.44 -844.22 -2.06 -16.18 16 17 C 0.10 1.78 5.76 86.38 0.50 2.28 16 18 C 0.05 0.82 7.39 71.98 0.53 1.35 16 19 O -0.59 -14.97 11.78 -148.98 -1.76 -16.73 16 20 C 0.17 2.99 5.57 85.63 0.48 3.47 16 21 C -0.08 -1.49 5.30 -19.87 -0.11 -1.59 16 22 C -0.12 -2.56 9.70 22.27 0.22 -2.35 16 23 C -0.10 -1.82 10.04 22.26 0.22 -1.60 16 24 C -0.15 -2.69 10.03 22.31 0.22 -2.46 16 25 C 0.08 1.38 7.30 22.38 0.16 1.54 16 26 F -0.15 -2.81 17.27 44.97 0.78 -2.04 16 27 C -0.14 -2.15 7.44 22.31 0.17 -1.98 16 28 H 0.28 14.04 8.31 -92.71 -0.77 13.27 16 29 H 0.40 19.86 7.90 -92.71 -0.73 19.12 16 30 H 0.08 3.21 8.14 -2.39 -0.02 3.19 16 31 H 0.09 3.33 8.14 -2.39 -0.02 3.31 16 32 H 0.41 15.04 4.37 -92.71 -0.40 14.64 16 33 H 0.07 1.52 6.36 -2.38 -0.02 1.51 16 34 H 0.14 1.17 7.89 -2.39 -0.02 1.15 16 35 H 0.07 0.97 8.14 -2.39 -0.02 0.95 16 36 H 0.06 0.93 5.15 -2.39 -0.01 0.92 16 37 H 0.39 7.39 9.12 -74.06 -0.68 6.72 16 38 H 0.08 1.78 7.36 -2.38 -0.02 1.76 16 39 H 0.13 1.18 7.84 -2.39 -0.02 1.17 16 40 H 0.12 3.05 7.55 -2.91 -0.02 3.03 16 41 H 0.15 2.16 8.06 -2.91 -0.02 2.14 16 42 H 0.15 1.99 8.06 -2.91 -0.02 1.96 16 43 H 0.16 1.64 7.81 -2.91 -0.02 1.62 16 Total: -1.00 -73.34 369.14 0.82 -72.52 By element: Atomic # 1 Polarization: 50.75 SS G_CDS: -0.72 Total: 50.03 kcal Atomic # 6 Polarization: 27.04 SS G_CDS: 6.30 Total: 33.34 kcal Atomic # 7 Polarization: -118.49 SS G_CDS: -5.71 Total: -124.20 kcal Atomic # 8 Polarization: -72.14 SS G_CDS: -1.86 Total: -74.00 kcal Atomic # 9 Polarization: -2.81 SS G_CDS: 0.78 Total: -2.04 kcal Atomic # 14 Polarization: 42.32 SS G_CDS: 2.03 Total: 44.34 kcal Total: -73.34 0.82 -72.52 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000358314471.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -76.885 kcal (2) G-P(sol) polarization free energy of solvation -73.337 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -150.221 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.818 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.518 kcal (6) G-S(sol) free energy of system = (1) + (5) -149.403 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds