Wall clock time and date at job start Tue Mar 31 2020 22:58:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.38206 * 119.91216 * 2 1 4 4 C 1.38054 * 120.19603 * 180.02562 * 3 2 1 5 5 C 1.39397 * 120.03411 * 359.97438 * 4 3 2 6 6 C 1.48404 * 120.08553 * 179.97438 * 5 4 3 7 7 C 1.39765 * 120.53542 * 0.29973 * 6 5 4 8 8 C 1.38416 * 118.31302 * 180.25679 * 7 6 5 9 9 C 1.38313 * 119.27693 * 359.44352 * 8 7 6 10 10 N 1.31882 * 121.03170 * 0.30018 * 9 8 7 11 11 C 1.31740 * 121.85321 * 359.97119 * 10 9 8 12 12 C 1.39190 * 119.83185 * 0.24632 * 5 4 3 13 13 C 1.38740 * 119.79863 * 359.54177 * 12 5 4 14 14 N 1.39747 * 120.01752 * 180.20464 * 13 12 5 15 15 C 1.34776 * 119.99828 * 24.86241 * 14 13 12 16 16 O 1.21381 * 120.00089 * 5.52595 * 15 14 13 17 17 C 1.49355 * 120.00230 * 185.52010 * 15 14 13 18 18 O 1.21364 * 119.99592 * 0.02562 * 17 15 14 19 19 N 1.34772 * 120.00269 * 180.02562 * 17 15 14 20 20 C 1.46493 * 120.00314 * 180.02562 * 19 17 15 21 21 C 1.50699 * 109.47442 * 179.97438 * 20 19 17 22 22 H 1.07999 * 119.99895 * 359.97438 * 21 20 19 23 23 C 1.37875 * 119.99858 * 180.02562 * 21 20 19 24 24 N 1.31513 * 120.00537 * 359.97438 * 23 21 20 25 25 Si 1.86807 * 119.99683 * 180.02562 * 23 21 20 26 26 H 1.48496 * 109.46941 * 89.99882 * 25 23 21 27 27 H 1.48502 * 109.47004 * 209.99760 * 25 23 21 28 28 H 1.48501 * 109.47236 * 329.99641 * 25 23 21 29 29 H 1.09005 * 109.47429 * 90.00245 * 1 2 3 30 30 H 1.09007 * 109.47530 * 210.00085 * 1 2 3 31 31 H 1.09001 * 109.47564 * 329.99780 * 1 2 3 32 32 H 1.08000 * 119.90006 * 359.97438 * 3 2 1 33 33 H 1.08007 * 119.98186 * 179.97438 * 4 3 2 34 34 H 1.08001 * 120.84467 * 359.97438 * 7 6 5 35 35 H 1.07996 * 120.36180 * 179.71760 * 8 7 6 36 36 H 1.08005 * 119.48203 * 180.27009 * 9 8 7 37 37 H 1.07996 * 119.70679 * 180.02562 * 11 10 9 38 38 H 1.08002 * 120.10100 * 179.72262 * 12 5 4 39 39 H 0.96995 * 119.99989 * 204.87178 * 14 13 12 40 40 H 0.97009 * 119.99723 * 359.97438 * 19 17 15 41 41 H 1.08998 * 109.47106 * 300.00007 * 20 19 17 42 42 H 1.09004 * 109.46877 * 59.99743 * 20 19 17 43 43 H 0.96996 * 120.00224 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1961 1.1980 0.0000 4 6 3.5767 1.2048 -0.0005 5 6 4.2803 0.0015 -0.0005 6 6 5.7644 0.0075 -0.0017 7 6 6.4696 1.2142 0.0035 8 6 7.8529 1.1661 -0.0033 9 6 8.4870 -0.0631 -0.0032 10 7 7.7944 -1.1854 -0.0026 11 6 6.4770 -1.1894 -0.0016 12 6 3.5876 -1.2058 -0.0052 13 6 2.2002 -1.2046 -0.0002 14 7 1.5000 -2.4140 -0.0005 15 6 2.0807 -3.5289 0.4855 16 8 3.1712 -3.4640 1.0145 17 6 1.3823 -4.8443 0.3734 18 8 0.2920 -4.9093 -0.1559 19 7 1.9627 -5.9591 0.8598 20 6 1.2779 -7.2494 0.7493 21 6 2.1334 -8.3266 1.3650 22 1 3.0916 -8.0752 1.7951 23 6 1.6933 -9.6331 1.3781 24 7 0.5267 -9.9394 0.8538 25 14 2.7534 -10.9682 2.1418 26 1 2.4190 -11.1021 3.5824 27 1 2.4978 -12.2583 1.4522 28 1 4.1862 -10.6054 1.9979 29 1 -0.3634 0.0000 -1.0277 30 1 -0.3634 -0.8900 0.5139 31 1 -0.3634 0.8899 0.5139 32 1 1.6531 2.1315 -0.0004 33 1 4.1118 2.1430 -0.0010 34 1 5.9484 2.1601 0.0080 35 1 8.4308 2.0785 -0.0041 36 1 9.5663 -0.1044 -0.0040 37 1 5.9447 -2.1290 -0.0008 38 1 4.1284 -2.1406 -0.0097 39 1 0.5962 -2.4510 -0.3506 40 1 2.8343 -5.9072 1.2825 41 1 0.3230 -7.2000 1.2726 42 1 1.1047 -7.4800 -0.3019 43 1 0.2169 -10.8585 0.8634 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000362127843.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:58:51 Heat of formation + Delta-G solvation = -9.032550 kcal Electronic energy + Delta-G solvation = -27520.230679 eV Core-core repulsion = 23530.238132 eV Total energy + Delta-G solvation = -3989.992547 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 339.137 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -41.17101 -40.34660 -39.17019 -37.92745 -35.57937 -34.45173 -33.67069 -32.51000 -32.40016 -30.85191 -30.16531 -27.80703 -26.94414 -25.14773 -24.02592 -23.56899 -22.72026 -21.79243 -20.87075 -19.93433 -18.71879 -17.89237 -17.31555 -16.71794 -16.32896 -15.97162 -15.78032 -15.56410 -15.19144 -15.13961 -14.71122 -14.40263 -14.20576 -14.08348 -13.95591 -13.82181 -13.53672 -13.35219 -13.14867 -12.65206 -12.46455 -12.15016 -12.08427 -11.96308 -11.84436 -11.59740 -11.17512 -11.02062 -10.93749 -10.84474 -10.34111 -10.19296 -9.70747 -9.66441 -9.50896 -9.18688 -8.86070 -8.54111 -8.17135 -8.09912 -6.24147 -4.31676 0.28230 0.97744 1.02204 1.49503 1.85859 2.54509 3.22959 3.29386 3.32739 3.33336 3.58883 3.82741 3.92629 4.14123 4.30229 4.37966 4.41631 4.60104 4.63707 4.72129 4.74566 4.88902 4.98627 5.05668 5.12812 5.18280 5.30792 5.35236 5.40729 5.44726 5.68877 5.75450 5.79689 5.87234 5.96912 6.13937 6.20239 6.34540 6.44973 6.74355 6.93482 7.03423 7.15016 7.32463 7.51514 7.75006 7.75569 7.83980 8.32046 8.50821 8.79187 9.34879 10.85873 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.011234 B = 0.002606 C = 0.002137 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2491.802089 B =10742.213057 C =13098.444272 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C -0.109 4.109 3 C -0.096 4.096 4 C -0.125 4.125 5 C -0.032 4.032 6 C -0.091 4.091 7 C -0.070 4.070 8 C -0.173 4.173 9 C 0.094 3.906 10 N -0.479 5.479 11 C 0.114 3.886 12 C -0.117 4.117 13 C 0.156 3.844 14 N -0.647 5.647 15 C 0.508 3.492 16 O -0.501 6.501 17 C 0.491 3.509 18 O -0.535 6.535 19 N -0.668 5.668 20 C 0.246 3.754 21 C -0.547 4.547 22 H 0.067 0.933 23 C 0.066 3.934 24 N -0.885 5.885 25 Si 0.906 3.094 26 H -0.278 1.278 27 H -0.284 1.284 28 H -0.271 1.271 29 H 0.075 0.925 30 H 0.068 0.932 31 H 0.073 0.927 32 H 0.129 0.871 33 H 0.125 0.875 34 H 0.136 0.864 35 H 0.136 0.864 36 H 0.155 0.845 37 H 0.162 0.838 38 H 0.152 0.848 39 H 0.424 0.576 40 H 0.405 0.595 41 H 0.036 0.964 42 H 0.036 0.964 43 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.281 26.750 -2.769 27.861 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C -0.111 4.111 3 C -0.115 4.115 4 C -0.144 4.144 5 C -0.033 4.033 6 C -0.093 4.093 7 C -0.095 4.095 8 C -0.192 4.192 9 C -0.063 4.063 10 N -0.187 5.187 11 C -0.043 4.043 12 C -0.136 4.136 13 C 0.061 3.939 14 N -0.293 5.293 15 C 0.291 3.709 16 O -0.375 6.375 17 C 0.269 3.731 18 O -0.414 6.414 19 N -0.317 5.317 20 C 0.126 3.874 21 C -0.585 4.585 22 H 0.085 0.915 23 C -0.138 4.138 24 N -0.522 5.522 25 Si 0.733 3.267 26 H -0.204 1.204 27 H -0.209 1.209 28 H -0.196 1.196 29 H 0.093 0.907 30 H 0.087 0.913 31 H 0.092 0.908 32 H 0.147 0.853 33 H 0.143 0.857 34 H 0.154 0.846 35 H 0.154 0.846 36 H 0.173 0.827 37 H 0.179 0.821 38 H 0.170 0.830 39 H 0.263 0.737 40 H 0.240 0.760 41 H 0.053 0.947 42 H 0.054 0.946 43 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 7.591 25.626 -2.800 26.873 hybrid contribution -0.008 0.104 0.447 0.459 sum 7.583 25.730 -2.353 26.928 Atomic orbital electron populations 1.20798 0.90606 1.03448 1.02783 1.19732 0.96353 0.91537 1.03525 1.20722 0.93695 0.96907 1.00140 1.21104 0.94081 0.97127 1.02075 1.18406 0.90800 0.93103 1.01033 1.19770 0.93032 0.94593 1.01887 1.21648 0.94127 0.97906 0.95858 1.22082 0.95015 0.99734 1.02403 1.22870 1.00545 0.87794 0.95082 1.67712 1.08410 1.31065 1.11521 1.23089 0.89648 0.97874 0.93710 1.21468 0.92447 0.99140 1.00592 1.17507 0.91193 0.84695 1.00518 1.43285 1.19421 1.06287 1.60304 1.20972 0.86106 0.85958 0.77837 1.90700 1.20263 1.86231 1.40260 1.19637 0.86479 0.84849 0.82116 1.90742 1.20252 1.86181 1.44263 1.46437 1.22549 1.08095 1.54658 1.19365 0.93301 0.76340 0.98346 1.21196 1.04847 0.92186 1.40303 0.91505 1.24935 0.95259 0.98631 0.95015 1.69960 1.18860 1.19746 1.43665 0.86363 0.80501 0.80597 0.79214 1.20363 1.20940 1.19558 0.90656 0.91330 0.90798 0.85275 0.85744 0.84579 0.84627 0.82725 0.82112 0.83049 0.73709 0.76007 0.94658 0.94645 0.92299 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.92 9.44 36.00 0.34 -0.58 16 2 C -0.11 -1.09 5.90 -104.36 -0.62 -1.70 16 3 C -0.10 -0.82 9.68 -39.66 -0.38 -1.21 16 4 C -0.13 -1.12 9.44 -39.22 -0.37 -1.49 16 5 C -0.03 -0.36 5.87 -104.92 -0.62 -0.97 16 6 C -0.09 -0.99 5.89 -104.75 -0.62 -1.61 16 7 C -0.07 -0.59 9.54 -38.95 -0.37 -0.96 16 8 C -0.17 -1.32 10.10 -39.49 -0.40 -1.72 16 9 C 0.09 0.88 11.17 -17.50 -0.20 0.68 16 10 N -0.48 -5.98 10.35 -12.98 -0.13 -6.12 16 11 C 0.11 1.41 10.60 -17.20 -0.18 1.23 16 12 C -0.12 -1.51 8.10 -39.04 -0.32 -1.83 16 13 C 0.16 1.95 6.40 -83.79 -0.54 1.41 16 14 N -0.65 -8.64 4.96 -10.32 -0.05 -8.69 16 15 C 0.51 8.29 7.69 -11.63 -0.09 8.20 16 16 O -0.50 -8.64 13.63 5.47 0.07 -8.56 16 17 C 0.49 9.54 7.89 -11.63 -0.09 9.45 16 18 O -0.54 -11.48 16.48 5.48 0.09 -11.39 16 19 N -0.67 -14.09 5.54 -61.95 -0.34 -14.44 16 20 C 0.25 6.28 5.43 -5.20 -0.03 6.26 16 21 C -0.55 -14.60 9.28 -34.44 -0.32 -14.92 16 22 H 0.07 1.70 7.60 -52.49 -0.40 1.30 16 23 C 0.07 1.79 5.46 -17.82 -0.10 1.69 16 24 N -0.89 -25.38 13.29 55.43 0.74 -24.64 16 25 Si 0.91 20.69 29.54 -169.99 -5.02 15.67 16 26 H -0.28 -6.27 7.11 56.52 0.40 -5.87 16 27 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 28 H -0.27 -6.06 7.11 56.52 0.40 -5.66 16 29 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 30 H 0.07 0.57 6.97 -51.93 -0.36 0.21 16 31 H 0.07 0.46 8.08 -51.93 -0.42 0.04 16 32 H 0.13 0.76 8.06 -52.49 -0.42 0.33 16 33 H 0.12 0.79 6.27 -52.48 -0.33 0.46 16 34 H 0.14 0.79 6.32 -52.49 -0.33 0.46 16 35 H 0.14 0.62 8.06 -52.49 -0.42 0.20 16 36 H 0.16 1.01 8.06 -52.48 -0.42 0.59 16 37 H 0.16 2.01 6.23 -52.49 -0.33 1.69 16 38 H 0.15 2.16 3.96 -52.49 -0.21 1.95 16 39 H 0.42 5.05 6.86 -40.82 -0.28 4.77 16 40 H 0.40 7.91 7.79 -40.82 -0.32 7.59 16 41 H 0.04 0.98 8.14 -51.93 -0.42 0.55 16 42 H 0.04 0.98 8.14 -51.93 -0.42 0.56 16 43 H 0.27 7.19 8.31 -40.82 -0.34 6.85 16 LS Contribution 369.96 15.07 5.58 5.58 Total: -1.00 -32.02 369.96 -8.61 -40.63 By element: Atomic # 1 Polarization: 14.71 SS G_CDS: -4.65 Total: 10.06 kcal Atomic # 6 Polarization: 6.80 SS G_CDS: -4.89 Total: 1.91 kcal Atomic # 7 Polarization: -54.09 SS G_CDS: 0.21 Total: -53.89 kcal Atomic # 8 Polarization: -20.12 SS G_CDS: 0.16 Total: -19.96 kcal Atomic # 14 Polarization: 20.69 SS G_CDS: -5.02 Total: 15.67 kcal Total LS contribution 5.58 Total: 5.58 kcal Total: -32.02 -8.61 -40.63 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000362127843.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.593 kcal (2) G-P(sol) polarization free energy of solvation -32.016 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.424 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.609 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.625 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.033 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds