Wall clock time and date at job start Tue Mar 31 2020 22:58:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.38206 * 119.91216 * 2 1 4 4 C 1.38054 * 120.19603 * 180.02562 * 3 2 1 5 5 C 1.39397 * 120.03411 * 359.97438 * 4 3 2 6 6 C 1.48404 * 120.08553 * 179.97438 * 5 4 3 7 7 C 1.39765 * 120.53542 * 0.29973 * 6 5 4 8 8 C 1.38416 * 118.31302 * 180.25679 * 7 6 5 9 9 C 1.38313 * 119.27693 * 359.44352 * 8 7 6 10 10 N 1.31882 * 121.03170 * 0.30018 * 9 8 7 11 11 C 1.31740 * 121.85321 * 359.97119 * 10 9 8 12 12 C 1.39190 * 119.83185 * 0.24632 * 5 4 3 13 13 C 1.38740 * 119.79863 * 359.54177 * 12 5 4 14 14 N 1.39747 * 120.01752 * 180.20464 * 13 12 5 15 15 C 1.34776 * 119.99828 * 24.86241 * 14 13 12 16 16 O 1.21381 * 120.00089 * 5.52595 * 15 14 13 17 17 C 1.49355 * 120.00230 * 185.52010 * 15 14 13 18 18 O 1.21364 * 119.99592 * 0.02562 * 17 15 14 19 19 N 1.34772 * 120.00269 * 180.02562 * 17 15 14 20 20 C 1.46493 * 120.00314 * 180.02562 * 19 17 15 21 21 C 1.50699 * 109.47442 * 179.97438 * 20 19 17 22 22 H 1.07999 * 119.99895 * 359.97438 * 21 20 19 23 23 C 1.37875 * 119.99858 * 180.02562 * 21 20 19 24 24 N 1.31513 * 120.00537 * 359.97438 * 23 21 20 25 25 Si 1.86807 * 119.99683 * 180.02562 * 23 21 20 26 26 H 1.48496 * 109.46941 * 89.99882 * 25 23 21 27 27 H 1.48502 * 109.47004 * 209.99760 * 25 23 21 28 28 H 1.48501 * 109.47236 * 329.99641 * 25 23 21 29 29 H 1.09005 * 109.47429 * 90.00245 * 1 2 3 30 30 H 1.09007 * 109.47530 * 210.00085 * 1 2 3 31 31 H 1.09001 * 109.47564 * 329.99780 * 1 2 3 32 32 H 1.08000 * 119.90006 * 359.97438 * 3 2 1 33 33 H 1.08007 * 119.98186 * 179.97438 * 4 3 2 34 34 H 1.08001 * 120.84467 * 359.97438 * 7 6 5 35 35 H 1.07996 * 120.36180 * 179.71760 * 8 7 6 36 36 H 1.08005 * 119.48203 * 180.27009 * 9 8 7 37 37 H 1.07996 * 119.70679 * 180.02562 * 11 10 9 38 38 H 1.08002 * 120.10100 * 179.72262 * 12 5 4 39 39 H 0.96995 * 119.99989 * 204.87178 * 14 13 12 40 40 H 0.97009 * 119.99723 * 359.97438 * 19 17 15 41 41 H 1.08998 * 109.47106 * 300.00007 * 20 19 17 42 42 H 1.09004 * 109.46877 * 59.99743 * 20 19 17 43 43 H 0.96996 * 120.00224 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1961 1.1980 0.0000 4 6 3.5767 1.2048 -0.0005 5 6 4.2803 0.0015 -0.0005 6 6 5.7644 0.0075 -0.0017 7 6 6.4696 1.2142 0.0035 8 6 7.8529 1.1661 -0.0033 9 6 8.4870 -0.0631 -0.0032 10 7 7.7944 -1.1854 -0.0026 11 6 6.4770 -1.1894 -0.0016 12 6 3.5876 -1.2058 -0.0052 13 6 2.2002 -1.2046 -0.0002 14 7 1.5000 -2.4140 -0.0005 15 6 2.0807 -3.5289 0.4855 16 8 3.1712 -3.4640 1.0145 17 6 1.3823 -4.8443 0.3734 18 8 0.2920 -4.9093 -0.1559 19 7 1.9627 -5.9591 0.8598 20 6 1.2779 -7.2494 0.7493 21 6 2.1334 -8.3266 1.3650 22 1 3.0916 -8.0752 1.7951 23 6 1.6933 -9.6331 1.3781 24 7 0.5267 -9.9394 0.8538 25 14 2.7534 -10.9682 2.1418 26 1 2.4190 -11.1021 3.5824 27 1 2.4978 -12.2583 1.4522 28 1 4.1862 -10.6054 1.9979 29 1 -0.3634 0.0000 -1.0277 30 1 -0.3634 -0.8900 0.5139 31 1 -0.3634 0.8899 0.5139 32 1 1.6531 2.1315 -0.0004 33 1 4.1118 2.1430 -0.0010 34 1 5.9484 2.1601 0.0080 35 1 8.4308 2.0785 -0.0041 36 1 9.5663 -0.1044 -0.0040 37 1 5.9447 -2.1290 -0.0008 38 1 4.1284 -2.1406 -0.0097 39 1 0.5962 -2.4510 -0.3506 40 1 2.8343 -5.9072 1.2825 41 1 0.3230 -7.2000 1.2726 42 1 1.1047 -7.4800 -0.3019 43 1 0.2169 -10.8585 0.8634 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000362127843.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:58:50 Heat of formation + Delta-G solvation = -30.545099 kcal Electronic energy + Delta-G solvation = -27521.163533 eV Core-core repulsion = 23530.238132 eV Total energy + Delta-G solvation = -3990.925401 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 339.137 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -42.31664 -41.24696 -40.35211 -39.25468 -36.82164 -36.07342 -34.64724 -34.32157 -33.21767 -31.56050 -31.10401 -29.72394 -27.72142 -26.53233 -25.12766 -24.33690 -24.09796 -22.94222 -21.83018 -21.37769 -20.12553 -18.80113 -18.34394 -18.23875 -17.50962 -17.25351 -17.10875 -16.88647 -16.43190 -16.10392 -16.01458 -15.74405 -15.23444 -15.06290 -14.96720 -14.68832 -14.57012 -14.52183 -14.10492 -13.96956 -13.92953 -13.35112 -13.19955 -13.05145 -12.92911 -12.75445 -12.73543 -12.41144 -12.28425 -12.15195 -11.85910 -11.55614 -10.94004 -10.87011 -10.72364 -10.40558 -10.39849 -10.10301 -9.43801 -8.93053 -8.33718 -6.49882 -0.48290 -0.08596 0.29238 0.57427 0.83736 1.20490 1.43068 1.43865 1.55915 2.01726 2.33886 2.61418 2.64045 3.01659 3.04634 3.30943 3.42697 3.61398 3.75395 3.92495 3.97769 4.02086 4.06321 4.22374 4.38008 4.43153 4.54539 4.70819 4.76331 4.80513 4.92429 4.94679 5.04930 5.11993 5.14192 5.17518 5.20731 5.22502 5.27736 5.42815 5.49477 5.57284 5.74755 5.74990 5.91360 5.94787 6.40906 6.54119 6.67009 6.93704 7.00075 7.22985 8.77904 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.011234 B = 0.002606 C = 0.002137 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2491.802089 B =10742.213057 C =13098.444272 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.104 4.104 3 C -0.091 4.091 4 C -0.113 4.113 5 C -0.044 4.044 6 C -0.102 4.102 7 C -0.067 4.067 8 C -0.159 4.159 9 C 0.080 3.920 10 N -0.515 5.515 11 C 0.084 3.916 12 C -0.139 4.139 13 C 0.124 3.876 14 N -0.630 5.630 15 C 0.517 3.483 16 O -0.514 6.514 17 C 0.494 3.506 18 O -0.556 6.556 19 N -0.672 5.672 20 C 0.263 3.737 21 C -0.563 4.563 22 H 0.078 0.922 23 C 0.012 3.988 24 N -0.924 5.924 25 Si 0.981 3.019 26 H -0.270 1.270 27 H -0.280 1.280 28 H -0.261 1.261 29 H 0.088 0.912 30 H 0.057 0.943 31 H 0.097 0.903 32 H 0.168 0.832 33 H 0.161 0.839 34 H 0.172 0.828 35 H 0.177 0.823 36 H 0.180 0.820 37 H 0.139 0.861 38 H 0.127 0.873 39 H 0.430 0.570 40 H 0.413 0.587 41 H 0.007 0.993 42 H 0.006 0.994 43 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.458 30.609 -2.345 31.842 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C -0.107 4.107 3 C -0.109 4.109 4 C -0.131 4.131 5 C -0.045 4.045 6 C -0.104 4.104 7 C -0.092 4.092 8 C -0.178 4.178 9 C -0.077 4.077 10 N -0.224 5.224 11 C -0.072 4.072 12 C -0.159 4.159 13 C 0.030 3.970 14 N -0.276 5.276 15 C 0.299 3.701 16 O -0.389 6.389 17 C 0.274 3.726 18 O -0.436 6.436 19 N -0.322 5.322 20 C 0.142 3.858 21 C -0.601 4.601 22 H 0.096 0.904 23 C -0.189 4.189 24 N -0.562 5.562 25 Si 0.804 3.196 26 H -0.195 1.195 27 H -0.205 1.205 28 H -0.185 1.185 29 H 0.107 0.893 30 H 0.076 0.924 31 H 0.115 0.885 32 H 0.186 0.814 33 H 0.178 0.822 34 H 0.189 0.811 35 H 0.194 0.806 36 H 0.197 0.803 37 H 0.156 0.844 38 H 0.144 0.856 39 H 0.270 0.730 40 H 0.249 0.751 41 H 0.025 0.975 42 H 0.024 0.976 43 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 8.765 29.542 -2.386 30.907 hybrid contribution -0.352 -0.897 0.255 0.997 sum 8.412 28.645 -2.131 29.931 Atomic orbital electron populations 1.20886 0.88973 1.04064 1.03815 1.20069 0.97610 0.90968 1.02018 1.21192 0.93731 0.97633 0.98347 1.21533 0.94519 0.97399 0.99636 1.18562 0.91119 0.93336 1.01510 1.19853 0.93056 0.95067 1.02442 1.22073 0.94634 0.98055 0.94425 1.22515 0.95024 1.00417 0.99882 1.23423 1.01764 0.87871 0.94598 1.67634 1.08615 1.33246 1.12920 1.22907 0.90102 0.98126 0.96105 1.21411 0.92917 0.99328 1.02235 1.17735 0.91205 0.84817 1.03244 1.43088 1.19455 1.05957 1.59106 1.20156 0.85765 0.85434 0.78770 1.90718 1.20577 1.86214 1.41365 1.20156 0.86078 0.85737 0.80666 1.90716 1.21274 1.86835 1.44764 1.46169 1.22853 1.07430 1.55711 1.18846 0.92580 0.78399 0.95994 1.21555 1.05375 0.92770 1.40380 0.90363 1.25944 0.96510 1.01183 0.95258 1.70090 1.20715 1.20536 1.44873 0.85204 0.78859 0.77145 0.78345 1.19512 1.20517 1.18492 0.89339 0.92443 0.88471 0.81427 0.82183 0.81093 0.80581 0.80322 0.84381 0.85553 0.73003 0.75080 0.97509 0.97621 0.91987 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.57 9.44 71.23 0.67 -0.89 16 2 C -0.10 -1.87 5.90 -19.70 -0.12 -1.98 16 3 C -0.09 -1.19 9.68 22.22 0.21 -0.98 16 4 C -0.11 -1.62 9.44 22.51 0.21 -1.41 16 5 C -0.04 -0.95 5.87 -20.06 -0.12 -1.06 16 6 C -0.10 -2.18 5.89 -19.94 -0.12 -2.29 16 7 C -0.07 -0.92 9.54 22.68 0.22 -0.70 16 8 C -0.16 -1.91 10.10 22.33 0.23 -1.68 16 9 C 0.08 1.39 11.17 84.70 0.95 2.34 16 10 N -0.52 -13.35 10.35 -194.96 -2.02 -15.37 16 11 C 0.08 2.23 10.60 84.96 0.90 3.13 16 12 C -0.14 -3.76 8.10 22.62 0.18 -3.58 16 13 C 0.12 3.10 6.40 38.18 0.24 3.34 16 14 N -0.63 -17.44 4.96 -304.92 -1.51 -18.95 16 15 C 0.52 17.81 7.69 87.24 0.67 18.48 16 16 O -0.51 -18.92 13.63 -3.34 -0.05 -18.96 16 17 C 0.49 20.29 7.89 87.24 0.69 20.98 16 18 O -0.56 -25.09 16.48 -3.29 -0.05 -25.14 16 19 N -0.67 -29.97 5.54 -468.25 -2.59 -32.56 16 20 C 0.26 14.22 5.43 85.63 0.46 14.68 16 21 C -0.56 -30.91 9.28 25.60 0.24 -30.67 16 22 H 0.08 4.02 7.60 -2.91 -0.02 4.00 16 23 C 0.01 0.64 5.46 84.65 0.46 1.10 16 24 N -0.92 -54.51 13.29 21.45 0.28 -54.23 16 25 Si 0.98 42.73 29.54 68.60 2.03 44.76 16 26 H -0.27 -11.36 7.11 99.48 0.71 -10.65 16 27 H -0.28 -11.93 7.11 99.48 0.71 -11.22 16 28 H -0.26 -10.86 7.11 99.48 0.71 -10.15 16 29 H 0.09 0.94 8.14 -2.38 -0.02 0.92 16 30 H 0.06 0.89 6.97 -2.38 -0.02 0.87 16 31 H 0.10 0.83 8.08 -2.39 -0.02 0.81 16 32 H 0.17 0.96 8.06 -2.91 -0.02 0.93 16 33 H 0.16 1.11 6.27 -2.91 -0.02 1.09 16 34 H 0.17 1.05 6.32 -2.91 -0.02 1.03 16 35 H 0.18 0.66 8.06 -2.91 -0.02 0.64 16 36 H 0.18 2.00 8.06 -2.91 -0.02 1.97 16 37 H 0.14 4.06 6.23 -2.91 -0.02 4.04 16 38 H 0.13 4.01 3.96 -2.91 -0.01 4.00 16 39 H 0.43 10.54 6.86 -92.71 -0.64 9.90 16 40 H 0.41 17.00 7.79 -92.70 -0.72 16.27 16 41 H 0.01 0.41 8.14 -2.39 -0.02 0.39 16 42 H 0.01 0.35 8.14 -2.39 -0.02 0.33 16 43 H 0.27 14.91 8.31 -92.71 -0.77 14.14 16 Total: -1.00 -74.14 369.96 1.81 -72.32 By element: Atomic # 1 Polarization: 29.58 SS G_CDS: -0.26 Total: 29.32 kcal Atomic # 6 Polarization: 12.83 SS G_CDS: 5.99 Total: 18.81 kcal Atomic # 7 Polarization: -115.26 SS G_CDS: -5.84 Total: -121.10 kcal Atomic # 8 Polarization: -44.01 SS G_CDS: -0.10 Total: -44.11 kcal Atomic # 14 Polarization: 42.73 SS G_CDS: 2.03 Total: 44.76 kcal Total: -74.14 1.81 -72.32 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000362127843.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.776 kcal (2) G-P(sol) polarization free energy of solvation -74.135 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.359 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.814 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.321 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.545 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds