Wall clock time and date at job start Tue Mar 31 2020 22:52:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.38317 * 119.87818 * 2 1 4 4 C 1.38019 * 120.11976 * 180.02562 * 3 2 1 5 5 C 1.39324 * 119.88036 * 359.97438 * 4 3 2 6 6 C 1.48404 * 120.12313 * 180.02562 * 5 4 3 7 7 C 1.39439 * 120.46859 * 359.97438 * 6 5 4 8 8 N 1.31791 * 120.91298 * 179.97438 * 7 6 5 9 9 C 1.31721 * 122.01126 * 359.74623 * 8 7 6 10 10 C 1.39581 * 120.83737 * 0.54421 * 9 8 7 11 11 C 1.47856 * 120.50617 * 179.71890 * 10 9 8 12 12 O 1.21543 * 120.00078 * 179.72493 * 11 10 9 13 13 N 1.34777 * 119.99811 * 359.72321 * 11 10 9 14 14 C 1.46496 * 120.00258 * 179.97438 * 13 11 10 15 15 C 1.50699 * 109.47313 * 180.02562 * 14 13 11 16 16 O 1.21282 * 120.00041 * 0.02562 * 15 14 13 17 17 N 1.34777 * 119.99618 * 180.02562 * 15 14 13 18 18 C 1.37097 * 119.99526 * 180.02562 * 17 15 14 19 19 H 1.07996 * 120.00463 * 359.97438 * 18 17 15 20 20 C 1.38959 * 120.00019 * 179.97438 * 18 17 15 21 21 N 1.31409 * 119.99541 * 359.97438 * 20 18 17 22 22 Si 1.86790 * 120.00052 * 180.02562 * 20 18 17 23 23 H 1.48500 * 109.47673 * 359.97438 * 22 20 18 24 24 H 1.48497 * 109.47286 * 120.00113 * 22 20 18 25 25 H 1.48501 * 109.47084 * 239.99916 * 22 20 18 26 26 C 1.39476 * 120.47250 * 179.97438 * 6 5 4 27 27 C 1.39338 * 119.75678 * 0.27144 * 5 4 3 28 28 C 1.38017 * 119.87834 * 359.49471 * 27 5 4 29 29 H 1.08997 * 109.46938 * 90.00057 * 1 2 3 30 30 H 1.08996 * 109.47194 * 210.00356 * 1 2 3 31 31 H 1.09006 * 109.47082 * 330.00338 * 1 2 3 32 32 H 1.08001 * 119.94235 * 0.02562 * 3 2 1 33 33 H 1.08009 * 120.06117 * 179.97438 * 4 3 2 34 34 H 1.07993 * 119.54764 * 0.02685 * 7 6 5 35 35 H 1.08001 * 119.58299 * 180.28889 * 9 8 7 36 36 H 0.96999 * 120.00047 * 0.02562 * 13 11 10 37 37 H 1.09000 * 109.47024 * 300.00478 * 14 13 11 38 38 H 1.09004 * 109.46875 * 60.00324 * 14 13 11 39 39 H 0.96996 * 120.00263 * 359.97438 * 17 15 14 40 40 H 0.97002 * 119.99680 * 179.97438 * 21 20 18 41 41 H 1.08003 * 120.90968 * 359.95950 * 26 6 5 42 42 H 1.08001 * 120.05925 * 179.70226 * 27 5 4 43 43 H 1.08000 * 119.94334 * 180.20448 * 28 27 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1961 1.1993 0.0000 4 6 3.5763 1.2051 -0.0005 5 6 4.2755 0.0001 -0.0005 6 6 5.7595 0.0000 -0.0005 7 6 6.4666 1.2018 -0.0011 8 7 7.7844 1.2120 -0.0006 9 6 8.4913 0.1006 0.0054 10 6 7.8640 -1.1463 0.0001 11 6 8.6647 -2.3893 0.0006 12 8 8.1089 -3.4702 0.0011 13 7 10.0108 -2.3237 0.0006 14 6 10.8042 -3.5553 0.0017 15 6 12.2707 -3.2081 0.0020 16 8 12.6188 -2.0463 0.0019 17 7 13.1953 -4.1887 0.0025 18 6 14.5294 -3.8729 0.0033 19 1 14.8394 -2.8384 0.0032 20 6 15.4827 -4.8839 0.0043 21 7 15.1054 -6.1426 0.0050 22 14 17.3004 -4.4535 0.0062 23 1 17.4597 -2.9771 0.0057 24 1 17.9421 -5.0207 1.2193 25 1 17.9446 -5.0207 -1.2056 26 6 6.4668 -1.2021 0.0000 27 6 3.5762 -1.2052 -0.0057 28 6 2.1961 -1.1994 -0.0003 29 1 -0.3633 0.0000 -1.0276 30 1 -0.3633 -0.8899 0.5139 31 1 -0.3633 0.8901 0.5138 32 1 1.6532 2.1329 0.0004 33 1 4.1134 2.1422 -0.0010 34 1 5.9269 2.1373 -0.0010 35 1 9.5699 0.1547 0.0103 36 1 10.4544 -1.4611 0.0006 37 1 10.5690 -4.1382 0.8921 38 1 10.5691 -4.1397 -0.8879 39 1 12.9168 -5.1179 0.0029 40 1 15.7709 -6.8484 0.0053 41 1 5.9495 -2.1502 0.0011 42 1 4.1133 -2.1422 -0.0106 43 1 1.6531 -2.1329 -0.0010 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000367807549.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:52:38 Heat of formation + Delta-G solvation = -19.512862 kcal Electronic energy + Delta-G solvation = -26609.748316 eV Core-core repulsion = 22619.301308 eV Total energy + Delta-G solvation = -3990.447007 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 339.137 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -40.96015 -39.70439 -38.96825 -38.07658 -34.72774 -34.36461 -33.76475 -32.65193 -31.44292 -31.32418 -31.02324 -27.93523 -27.01531 -25.16765 -24.14983 -23.87190 -22.38549 -21.55979 -20.32039 -19.69783 -18.48345 -17.99128 -17.23786 -16.84805 -16.44213 -15.71963 -15.46423 -15.44418 -15.31642 -14.90064 -14.57119 -14.47895 -14.18884 -14.13718 -14.07715 -13.78260 -13.63566 -13.34107 -13.21232 -12.71291 -12.56766 -12.48700 -12.24995 -12.02798 -11.72628 -11.66508 -11.30648 -11.16688 -10.42996 -10.42697 -10.38191 -10.28877 -9.77174 -9.68200 -9.61720 -9.33488 -8.94523 -8.68993 -8.40414 -8.13928 -6.54829 -3.96861 0.12962 0.61341 1.03016 1.43790 2.79149 3.08325 3.11324 3.21670 3.28757 3.36762 3.68745 3.77430 3.96875 4.08366 4.18316 4.36334 4.47650 4.52876 4.54872 4.62530 4.71666 4.80426 4.88062 4.97687 5.09612 5.13704 5.17082 5.21746 5.28010 5.38511 5.62797 5.68084 5.70229 5.76399 5.85073 5.88047 5.98791 6.00387 6.20116 6.21296 6.26040 6.50735 6.58216 7.43441 7.56774 7.63002 7.88159 8.22692 8.40976 9.01199 9.35025 9.82408 10.61979 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.034293 B = 0.001697 C = 0.001619 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 816.298451 B =16490.951167 C =17286.800599 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C -0.084 4.084 3 C -0.118 4.118 4 C -0.105 4.105 5 C -0.046 4.046 6 C -0.105 4.105 7 C 0.127 3.873 8 N -0.479 5.479 9 C 0.136 3.864 10 C -0.174 4.174 11 C 0.560 3.440 12 O -0.542 6.542 13 N -0.699 5.699 14 C 0.108 3.892 15 C 0.427 3.573 16 O -0.597 6.597 17 N -0.547 5.547 18 C -0.306 4.306 19 H 0.107 0.893 20 C 0.026 3.974 21 N -0.893 5.893 22 Si 0.933 3.067 23 H -0.267 1.267 24 H -0.280 1.280 25 H -0.280 1.280 26 C -0.011 4.011 27 C -0.103 4.103 28 C -0.116 4.116 29 H 0.071 0.929 30 H 0.067 0.933 31 H 0.066 0.934 32 H 0.125 0.875 33 H 0.127 0.873 34 H 0.162 0.838 35 H 0.166 0.834 36 H 0.411 0.589 37 H 0.087 0.913 38 H 0.087 0.913 39 H 0.396 0.604 40 H 0.274 0.726 41 H 0.150 0.850 42 H 0.129 0.871 43 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.598 11.275 -0.023 28.889 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C -0.084 4.084 3 C -0.136 4.136 4 C -0.122 4.122 5 C -0.047 4.047 6 C -0.108 4.108 7 C -0.030 4.030 8 N -0.187 5.187 9 C -0.022 4.022 10 C -0.180 4.180 11 C 0.346 3.654 12 O -0.420 6.420 13 N -0.352 5.352 14 C -0.019 4.019 15 C 0.212 3.788 16 O -0.484 6.484 17 N -0.182 5.182 18 C -0.435 4.435 19 H 0.125 0.875 20 C -0.177 4.177 21 N -0.534 5.534 22 Si 0.760 3.240 23 H -0.191 1.191 24 H -0.206 1.206 25 H -0.206 1.206 26 C -0.037 4.037 27 C -0.121 4.121 28 C -0.134 4.134 29 H 0.090 0.910 30 H 0.086 0.914 31 H 0.085 0.915 32 H 0.143 0.857 33 H 0.145 0.855 34 H 0.179 0.821 35 H 0.183 0.817 36 H 0.250 0.750 37 H 0.105 0.895 38 H 0.105 0.895 39 H 0.230 0.770 40 H 0.084 0.916 41 H 0.168 0.832 42 H 0.146 0.854 43 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges -26.129 11.874 -0.025 28.700 hybrid contribution 0.641 -0.962 -0.005 1.156 sum -25.488 10.912 -0.030 27.726 Atomic orbital electron populations 1.20824 0.91081 1.02921 1.02461 1.20039 0.96242 0.93195 0.98962 1.20967 0.93867 0.97700 1.01067 1.21185 0.94228 0.97224 0.99608 1.18548 0.90518 0.93844 1.01792 1.19713 0.93286 0.94154 1.03603 1.23106 0.89882 0.97387 0.92639 1.67718 1.07714 1.30768 1.12467 1.23209 1.00831 0.86671 0.91455 1.20962 0.94824 0.95029 1.07142 1.17921 0.82080 0.88270 0.77135 1.90766 1.71422 1.29266 1.50588 1.45615 1.05188 1.11127 1.73304 1.21017 0.90640 0.86666 1.03577 1.19688 0.86609 0.86630 0.85869 1.90499 1.81198 1.19212 1.57457 1.41792 1.05955 1.08014 1.62409 1.19796 0.80336 0.95137 1.48230 0.87538 1.25336 1.00992 0.94656 0.96696 1.69622 1.35485 0.99033 1.49213 0.85747 0.81453 0.79001 0.77840 1.19090 1.20595 1.20600 1.21782 0.92378 0.98768 0.90767 1.21292 0.94302 0.97590 0.98918 1.21000 0.93882 0.97781 1.00767 0.91019 0.91413 0.91452 0.85710 0.85488 0.82108 0.81655 0.74973 0.89489 0.89481 0.77009 0.91601 0.83212 0.85361 0.85660 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.54 10.01 36.01 0.36 -0.18 16 2 C -0.08 -0.59 5.88 -104.56 -0.62 -1.21 16 3 C -0.12 -0.81 9.68 -39.63 -0.38 -1.19 16 4 C -0.10 -0.79 9.44 -39.26 -0.37 -1.16 16 5 C -0.05 -0.42 5.88 -104.90 -0.62 -1.04 16 6 C -0.11 -1.09 5.89 -104.80 -0.62 -1.71 16 7 C 0.13 1.29 10.59 -17.12 -0.18 1.11 16 8 N -0.48 -5.83 10.33 -12.64 -0.13 -5.96 16 9 C 0.14 1.69 10.71 -17.10 -0.18 1.51 16 10 C -0.17 -2.30 5.89 -104.86 -0.62 -2.92 16 11 C 0.56 8.80 7.78 -12.32 -0.10 8.71 16 12 O -0.54 -9.81 16.41 5.33 0.09 -9.72 16 13 N -0.70 -11.35 5.48 -62.43 -0.34 -11.69 16 14 C 0.11 1.93 6.15 -5.20 -0.03 1.90 16 15 C 0.43 9.54 7.85 -10.99 -0.09 9.45 16 16 O -0.60 -14.90 15.24 5.56 0.08 -14.82 16 17 N -0.55 -13.31 5.29 -10.96 -0.06 -13.36 16 18 C -0.31 -8.19 9.68 -14.93 -0.14 -8.34 16 19 H 0.11 2.98 7.16 -52.49 -0.38 2.60 16 20 C 0.03 0.68 5.50 -17.47 -0.10 0.58 16 21 N -0.89 -23.56 13.05 55.50 0.72 -22.84 16 22 Si 0.93 20.33 29.55 -169.99 -5.02 15.31 16 23 H -0.27 -5.80 7.11 56.52 0.40 -5.40 16 24 H -0.28 -6.02 7.11 56.52 0.40 -5.62 16 25 H -0.28 -6.03 7.11 56.52 0.40 -5.62 16 26 C -0.01 -0.13 9.07 -38.52 -0.35 -0.48 16 27 C -0.10 -0.90 9.44 -39.25 -0.37 -1.27 16 28 C -0.12 -0.88 9.68 -39.63 -0.38 -1.27 16 29 H 0.07 0.29 8.14 -51.93 -0.42 -0.13 16 30 H 0.07 0.27 8.08 -51.93 -0.42 -0.15 16 31 H 0.07 0.26 8.08 -51.93 -0.42 -0.16 16 32 H 0.12 0.59 8.06 -52.49 -0.42 0.17 16 33 H 0.13 0.70 6.23 -52.48 -0.33 0.37 16 34 H 0.16 1.14 6.21 -52.49 -0.33 0.81 16 35 H 0.17 1.89 6.41 -52.49 -0.34 1.55 16 36 H 0.41 6.47 5.49 -40.82 -0.22 6.25 16 37 H 0.09 1.48 8.14 -51.93 -0.42 1.05 16 38 H 0.09 1.48 8.14 -51.93 -0.42 1.05 16 39 H 0.40 9.25 7.90 -40.82 -0.32 8.92 16 40 H 0.27 6.81 8.31 -40.82 -0.34 6.47 16 41 H 0.15 1.66 5.99 -52.48 -0.31 1.34 16 42 H 0.13 1.03 6.27 -52.49 -0.33 0.70 16 43 H 0.13 0.73 8.06 -52.49 -0.42 0.31 16 LS Contribution 372.47 15.07 5.61 5.61 Total: -1.00 -31.97 372.47 -8.47 -40.44 By element: Atomic # 1 Polarization: 19.17 SS G_CDS: -4.64 Total: 14.53 kcal Atomic # 6 Polarization: 7.29 SS G_CDS: -4.78 Total: 2.51 kcal Atomic # 7 Polarization: -54.05 SS G_CDS: 0.19 Total: -53.85 kcal Atomic # 8 Polarization: -24.71 SS G_CDS: 0.17 Total: -24.54 kcal Atomic # 14 Polarization: 20.33 SS G_CDS: -5.02 Total: 15.31 kcal Total LS contribution 5.61 Total: 5.61 kcal Total: -31.97 -8.47 -40.44 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000367807549.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.928 kcal (2) G-P(sol) polarization free energy of solvation -31.971 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.042 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.471 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.441 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.513 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds