Wall clock time and date at job start Tue Mar 31 2020 22:52:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.38317 * 119.87818 * 2 1 4 4 C 1.38019 * 120.11976 * 180.02562 * 3 2 1 5 5 C 1.39324 * 119.88036 * 359.97438 * 4 3 2 6 6 C 1.48404 * 120.12313 * 180.02562 * 5 4 3 7 7 C 1.39439 * 120.46859 * 359.97438 * 6 5 4 8 8 N 1.31791 * 120.91298 * 179.97438 * 7 6 5 9 9 C 1.31721 * 122.01126 * 359.74623 * 8 7 6 10 10 C 1.39581 * 120.83737 * 0.54421 * 9 8 7 11 11 C 1.47856 * 120.50617 * 179.71890 * 10 9 8 12 12 O 1.21543 * 120.00078 * 179.72493 * 11 10 9 13 13 N 1.34777 * 119.99811 * 359.72321 * 11 10 9 14 14 C 1.46496 * 120.00258 * 179.97438 * 13 11 10 15 15 C 1.50699 * 109.47313 * 180.02562 * 14 13 11 16 16 O 1.21282 * 120.00041 * 0.02562 * 15 14 13 17 17 N 1.34777 * 119.99618 * 180.02562 * 15 14 13 18 18 C 1.37097 * 119.99526 * 180.02562 * 17 15 14 19 19 H 1.07996 * 120.00463 * 359.97438 * 18 17 15 20 20 C 1.38959 * 120.00019 * 179.97438 * 18 17 15 21 21 N 1.31409 * 119.99541 * 359.97438 * 20 18 17 22 22 Si 1.86790 * 120.00052 * 180.02562 * 20 18 17 23 23 H 1.48500 * 109.47673 * 359.97438 * 22 20 18 24 24 H 1.48497 * 109.47286 * 120.00113 * 22 20 18 25 25 H 1.48501 * 109.47084 * 239.99916 * 22 20 18 26 26 C 1.39476 * 120.47250 * 179.97438 * 6 5 4 27 27 C 1.39338 * 119.75678 * 0.27144 * 5 4 3 28 28 C 1.38017 * 119.87834 * 359.49471 * 27 5 4 29 29 H 1.08997 * 109.46938 * 90.00057 * 1 2 3 30 30 H 1.08996 * 109.47194 * 210.00356 * 1 2 3 31 31 H 1.09006 * 109.47082 * 330.00338 * 1 2 3 32 32 H 1.08001 * 119.94235 * 0.02562 * 3 2 1 33 33 H 1.08009 * 120.06117 * 179.97438 * 4 3 2 34 34 H 1.07993 * 119.54764 * 0.02685 * 7 6 5 35 35 H 1.08001 * 119.58299 * 180.28889 * 9 8 7 36 36 H 0.96999 * 120.00047 * 0.02562 * 13 11 10 37 37 H 1.09000 * 109.47024 * 300.00478 * 14 13 11 38 38 H 1.09004 * 109.46875 * 60.00324 * 14 13 11 39 39 H 0.96996 * 120.00263 * 359.97438 * 17 15 14 40 40 H 0.97002 * 119.99680 * 179.97438 * 21 20 18 41 41 H 1.08003 * 120.90968 * 359.95950 * 26 6 5 42 42 H 1.08001 * 120.05925 * 179.70226 * 27 5 4 43 43 H 1.08000 * 119.94334 * 180.20448 * 28 27 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1961 1.1993 0.0000 4 6 3.5763 1.2051 -0.0005 5 6 4.2755 0.0001 -0.0005 6 6 5.7595 0.0000 -0.0005 7 6 6.4666 1.2018 -0.0011 8 7 7.7844 1.2120 -0.0006 9 6 8.4913 0.1006 0.0054 10 6 7.8640 -1.1463 0.0001 11 6 8.6647 -2.3893 0.0006 12 8 8.1089 -3.4702 0.0011 13 7 10.0108 -2.3237 0.0006 14 6 10.8042 -3.5553 0.0017 15 6 12.2707 -3.2081 0.0020 16 8 12.6188 -2.0463 0.0019 17 7 13.1953 -4.1887 0.0025 18 6 14.5294 -3.8729 0.0033 19 1 14.8394 -2.8384 0.0032 20 6 15.4827 -4.8839 0.0043 21 7 15.1054 -6.1426 0.0050 22 14 17.3004 -4.4535 0.0062 23 1 17.4597 -2.9771 0.0057 24 1 17.9421 -5.0207 1.2193 25 1 17.9446 -5.0207 -1.2056 26 6 6.4668 -1.2021 0.0000 27 6 3.5762 -1.2052 -0.0057 28 6 2.1961 -1.1994 -0.0003 29 1 -0.3633 0.0000 -1.0276 30 1 -0.3633 -0.8899 0.5139 31 1 -0.3633 0.8901 0.5138 32 1 1.6532 2.1329 0.0004 33 1 4.1134 2.1422 -0.0010 34 1 5.9269 2.1373 -0.0010 35 1 9.5699 0.1547 0.0103 36 1 10.4544 -1.4611 0.0006 37 1 10.5690 -4.1382 0.8921 38 1 10.5691 -4.1397 -0.8879 39 1 12.9168 -5.1179 0.0029 40 1 15.7709 -6.8484 0.0053 41 1 5.9495 -2.1502 0.0011 42 1 4.1133 -2.1422 -0.0106 43 1 1.6531 -2.1329 -0.0010 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000367807549.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:52:37 Heat of formation + Delta-G solvation = -39.802286 kcal Electronic energy + Delta-G solvation = -26610.628131 eV Core-core repulsion = 22619.301308 eV Total energy + Delta-G solvation = -3991.326823 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 339.137 amu Computer time = 1.71 seconds Orbital eigenvalues (eV) -41.91711 -40.79098 -40.04587 -39.56025 -36.31859 -35.55034 -35.01567 -33.61895 -33.35079 -31.90864 -31.76055 -29.40736 -27.61568 -26.74810 -25.36216 -24.68192 -23.09724 -22.32504 -21.44376 -21.33785 -20.13282 -19.38712 -18.24669 -17.79360 -17.37795 -17.20910 -16.86091 -16.60132 -16.42000 -15.99242 -15.72848 -15.72267 -15.64178 -15.04572 -14.98136 -14.71014 -14.52542 -14.37933 -13.99233 -13.93459 -13.63543 -13.55945 -13.38411 -13.10474 -12.96238 -12.92161 -12.44893 -12.27783 -12.11415 -11.84797 -11.58627 -11.51765 -11.22654 -10.70065 -10.60538 -10.58053 -10.28909 -10.09647 -9.89254 -9.06667 -8.51874 -6.01864 -0.68675 -0.28911 0.47434 0.72235 1.34737 1.43234 1.56842 1.67501 1.83725 1.89540 2.29822 2.59149 2.99276 3.07239 3.11711 3.15536 3.39654 3.62294 3.65213 3.68765 3.84997 4.01934 4.09217 4.16284 4.18805 4.30413 4.39545 4.42085 4.50949 4.54000 4.72984 4.84124 4.86856 4.91766 4.95325 5.10869 5.16066 5.25381 5.35042 5.38427 5.50246 5.58600 5.68336 5.90816 6.04722 6.31551 6.47274 6.69408 6.94252 7.03092 7.42842 7.93013 8.65122 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.034293 B = 0.001697 C = 0.001619 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 816.298451 B =16490.951167 C =17286.800599 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C -0.086 4.086 3 C -0.124 4.124 4 C -0.105 4.105 5 C -0.068 4.068 6 C -0.096 4.096 7 C 0.132 3.868 8 N -0.493 5.493 9 C 0.132 3.868 10 C -0.187 4.187 11 C 0.566 3.434 12 O -0.569 6.569 13 N -0.699 5.699 14 C 0.120 3.880 15 C 0.432 3.568 16 O -0.623 6.623 17 N -0.558 5.558 18 C -0.337 4.337 19 H 0.087 0.913 20 C -0.009 4.009 21 N -0.915 5.915 22 Si 0.997 3.003 23 H -0.270 1.270 24 H -0.271 1.271 25 H -0.272 1.272 26 C -0.018 4.018 27 C -0.117 4.117 28 C -0.128 4.128 29 H 0.079 0.921 30 H 0.072 0.928 31 H 0.078 0.922 32 H 0.149 0.851 33 H 0.148 0.852 34 H 0.195 0.805 35 H 0.169 0.831 36 H 0.414 0.586 37 H 0.100 0.900 38 H 0.100 0.900 39 H 0.399 0.601 40 H 0.280 0.720 41 H 0.151 0.849 42 H 0.125 0.875 43 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -28.284 12.575 -0.019 30.953 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C -0.086 4.086 3 C -0.142 4.142 4 C -0.122 4.122 5 C -0.069 4.069 6 C -0.098 4.098 7 C -0.025 4.025 8 N -0.201 5.201 9 C -0.026 4.026 10 C -0.192 4.192 11 C 0.353 3.647 12 O -0.449 6.449 13 N -0.353 5.353 14 C -0.007 4.007 15 C 0.219 3.781 16 O -0.511 6.511 17 N -0.193 5.193 18 C -0.467 4.467 19 H 0.105 0.895 20 C -0.210 4.210 21 N -0.555 5.555 22 Si 0.820 3.180 23 H -0.194 1.194 24 H -0.197 1.197 25 H -0.197 1.197 26 C -0.044 4.044 27 C -0.135 4.135 28 C -0.146 4.146 29 H 0.097 0.903 30 H 0.091 0.909 31 H 0.097 0.903 32 H 0.167 0.833 33 H 0.166 0.834 34 H 0.212 0.788 35 H 0.186 0.814 36 H 0.253 0.747 37 H 0.118 0.882 38 H 0.118 0.882 39 H 0.234 0.766 40 H 0.089 0.911 41 H 0.168 0.832 42 H 0.143 0.857 43 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges -27.833 13.170 -0.020 30.792 hybrid contribution 0.955 -1.298 -0.007 1.611 sum -26.878 11.873 -0.028 29.383 Atomic orbital electron populations 1.20880 0.89385 1.03804 1.03183 1.20408 0.97619 0.93034 0.97566 1.21309 0.93790 0.98693 1.00367 1.21466 0.94787 0.97383 0.98609 1.18592 0.89738 0.94778 1.03755 1.19847 0.94121 0.93579 1.02277 1.23647 0.89321 0.98634 0.90933 1.67775 1.08738 1.30428 1.13110 1.23237 1.01141 0.86566 0.91637 1.20742 0.95107 0.94021 1.09366 1.18223 0.81661 0.88823 0.75983 1.90745 1.71759 1.30484 1.51934 1.45600 1.05446 1.10625 1.73651 1.20857 0.87494 0.87583 1.04769 1.20370 0.88155 0.85856 0.83728 1.90477 1.82247 1.20352 1.58027 1.41829 1.05685 1.08495 1.63300 1.19789 0.81883 0.94649 1.50342 0.89504 1.26114 1.04748 0.94410 0.95747 1.69683 1.36905 0.99656 1.49264 0.84814 0.76455 0.78462 0.78273 1.19437 1.19674 1.19681 1.21884 0.91921 0.99659 0.90931 1.21420 0.95048 0.97604 0.99402 1.21230 0.93580 0.98898 1.00908 0.90255 0.90890 0.90289 0.83348 0.83405 0.78844 0.81370 0.74656 0.88242 0.88236 0.76646 0.91073 0.83164 0.85672 0.84412 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.78 10.01 71.24 0.71 -0.07 16 2 C -0.09 -1.02 5.88 -19.82 -0.12 -1.14 16 3 C -0.12 -1.36 9.68 22.24 0.22 -1.15 16 4 C -0.10 -1.33 9.44 22.48 0.21 -1.12 16 5 C -0.07 -1.15 5.88 -20.04 -0.12 -1.27 16 6 C -0.10 -1.89 5.89 -19.98 -0.12 -2.01 16 7 C 0.13 2.44 10.59 84.99 0.90 3.34 16 8 N -0.49 -11.49 10.33 -193.92 -2.00 -13.49 16 9 C 0.13 3.25 10.71 85.03 0.91 4.17 16 10 C -0.19 -4.96 5.89 -20.02 -0.12 -5.08 16 11 C 0.57 17.94 7.78 86.79 0.68 18.61 16 12 O -0.57 -20.79 16.41 -3.85 -0.06 -20.85 16 13 N -0.70 -22.87 5.48 -469.71 -2.57 -25.45 16 14 C 0.12 4.30 6.15 85.63 0.53 4.82 16 15 C 0.43 19.60 7.85 87.66 0.69 20.29 16 16 O -0.62 -31.68 15.24 -3.04 -0.05 -31.72 16 17 N -0.56 -27.63 5.29 -306.99 -1.62 -29.25 16 18 C -0.34 -18.43 9.68 84.04 0.81 -17.62 16 19 H 0.09 5.00 7.16 -2.91 -0.02 4.98 16 20 C -0.01 -0.49 5.50 84.93 0.47 -0.02 16 21 N -0.92 -48.21 13.05 21.67 0.28 -47.92 16 22 Si 1.00 41.56 29.55 68.60 2.03 43.59 16 23 H -0.27 -11.29 7.11 99.48 0.71 -10.59 16 24 H -0.27 -10.89 7.11 99.48 0.71 -10.19 16 25 H -0.27 -10.90 7.11 99.48 0.71 -10.19 16 26 C -0.02 -0.42 9.07 22.95 0.21 -0.22 16 27 C -0.12 -1.97 9.44 22.48 0.21 -1.76 16 28 C -0.13 -1.79 9.68 22.24 0.22 -1.58 16 29 H 0.08 0.44 8.14 -2.39 -0.02 0.42 16 30 H 0.07 0.43 8.08 -2.39 -0.02 0.41 16 31 H 0.08 0.36 8.08 -2.38 -0.02 0.34 16 32 H 0.15 0.88 8.06 -2.91 -0.02 0.86 16 33 H 0.15 1.13 6.23 -2.91 -0.02 1.11 16 34 H 0.19 2.13 6.21 -2.91 -0.02 2.12 16 35 H 0.17 3.90 6.41 -2.91 -0.02 3.88 16 36 H 0.41 13.21 5.49 -92.71 -0.51 12.70 16 37 H 0.10 3.34 8.14 -2.39 -0.02 3.32 16 38 H 0.10 3.35 8.14 -2.38 -0.02 3.33 16 39 H 0.40 18.96 7.90 -92.71 -0.73 18.23 16 40 H 0.28 13.76 8.31 -92.71 -0.77 12.99 16 41 H 0.15 3.43 5.99 -2.91 -0.02 3.41 16 42 H 0.13 2.06 6.27 -2.91 -0.02 2.05 16 43 H 0.14 1.45 8.06 -2.91 -0.02 1.43 16 Total: -1.00 -68.41 372.47 2.14 -66.27 By element: Atomic # 1 Polarization: 40.77 SS G_CDS: -0.15 Total: 40.62 kcal Atomic # 6 Polarization: 11.92 SS G_CDS: 6.29 Total: 18.21 kcal Atomic # 7 Polarization: -110.20 SS G_CDS: -5.92 Total: -116.12 kcal Atomic # 8 Polarization: -52.46 SS G_CDS: -0.11 Total: -52.57 kcal Atomic # 14 Polarization: 41.56 SS G_CDS: 2.03 Total: 43.59 kcal Total: -68.41 2.14 -66.27 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000367807549.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.470 kcal (2) G-P(sol) polarization free energy of solvation -68.414 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.943 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.141 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.273 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.802 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.71 seconds