Wall clock time and date at job start Tue Mar 31 2020 22:52:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.38339 * 119.94176 * 2 1 4 4 C 1.38297 * 120.24456 * 179.97438 * 3 2 1 5 5 C 1.38042 * 120.11895 * 359.74205 * 4 3 2 6 6 C 1.39310 * 119.87816 * 0.49012 * 5 4 3 7 7 C 1.48409 * 120.12103 * 179.79359 * 6 5 4 8 8 C 1.39439 * 120.47095 * 179.74266 * 7 6 5 9 9 N 1.31785 * 120.91615 * 179.97438 * 8 7 6 10 10 C 1.31716 * 122.01271 * 0.02562 * 9 8 7 11 11 C 1.39593 * 120.83263 * 359.74092 * 10 9 8 12 12 C 1.47860 * 120.50160 * 180.28883 * 11 10 9 13 13 O 1.21549 * 119.99731 * 180.22355 * 12 11 10 14 14 N 1.34771 * 119.99974 * 0.22010 * 12 11 10 15 15 C 1.46503 * 120.00179 * 180.02562 * 14 12 11 16 16 C 1.50701 * 109.47210 * 179.97438 * 15 14 12 17 17 O 1.21286 * 120.00170 * 0.02562 * 16 15 14 18 18 N 1.34780 * 119.99864 * 179.97438 * 16 15 14 19 19 C 1.37094 * 120.00088 * 180.02562 * 18 16 15 20 20 H 1.07995 * 119.99782 * 0.02562 * 19 18 16 21 21 C 1.38945 * 119.99865 * 180.02562 * 19 18 16 22 22 N 1.31417 * 120.00095 * 179.97438 * 21 19 18 23 23 Si 1.86797 * 120.00423 * 359.97438 * 21 19 18 24 24 H 1.48498 * 109.47311 * 89.99949 * 23 21 19 25 25 H 1.48498 * 109.47650 * 210.00243 * 23 21 19 26 26 H 1.48505 * 109.47148 * 330.00386 * 23 21 19 27 27 C 1.39478 * 120.46837 * 359.71721 * 7 6 5 28 28 C 1.38004 * 119.94073 * 179.97438 * 2 1 3 29 29 H 1.09000 * 109.47115 * 270.02767 * 1 2 3 30 30 H 1.08994 * 109.46894 * 30.02615 * 1 2 3 31 31 H 1.08998 * 109.46978 * 150.02522 * 1 2 3 32 32 H 1.07998 * 119.87930 * 0.02562 * 3 2 1 33 33 H 1.08001 * 119.94381 * 180.02562 * 4 3 2 34 34 H 1.08004 * 120.06504 * 180.25077 * 5 4 3 35 35 H 1.08006 * 119.54335 * 359.97438 * 8 7 6 36 36 H 1.08005 * 119.58740 * 179.97438 * 10 9 8 37 37 H 0.97007 * 120.00263 * 0.02562 * 14 12 11 38 38 H 1.08993 * 109.47103 * 300.00086 * 15 14 12 39 39 H 1.09003 * 109.46658 * 59.99987 * 15 14 12 40 40 H 0.97004 * 119.99407 * 0.02562 * 18 16 15 41 41 H 0.96996 * 120.00298 * 179.97438 * 22 21 19 42 42 H 1.08002 * 120.90726 * 359.97438 * 27 7 6 43 43 H 1.08006 * 120.05766 * 359.97438 * 28 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1975 1.1988 0.0000 4 6 3.5804 1.2061 0.0005 5 6 4.2794 0.0157 0.0064 6 6 3.5892 -1.1944 0.0015 7 6 4.3353 -2.4773 0.0032 8 6 3.6519 -3.6927 0.0038 9 7 4.3055 -4.8371 0.0048 10 6 5.6216 -4.8894 0.0058 11 6 6.3842 -3.7202 0.0005 12 6 7.8612 -3.7875 -0.0047 13 8 8.5162 -2.7636 -0.0053 14 7 8.4812 -4.9841 -0.0089 15 6 9.9447 -5.0509 -0.0135 16 6 10.3818 -6.4931 -0.0168 17 8 9.5525 -7.3781 -0.0160 18 7 11.6943 -6.7995 -0.0218 19 6 12.0920 -8.1114 -0.0254 20 1 11.3536 -8.8995 -0.0247 21 6 13.4451 -8.4272 -0.0300 22 7 13.8263 -9.6849 -0.0330 23 14 14.7224 -7.0642 -0.0320 24 1 15.0652 -6.7049 1.3675 25 1 15.9435 -7.5310 -0.7365 26 1 14.1739 -5.8729 -0.7287 27 6 5.7301 -2.4843 0.0038 28 6 2.1958 -1.1959 0.0005 29 1 -0.3633 0.0005 1.0277 30 1 -0.3633 0.8897 -0.5142 31 1 -0.3633 -0.8902 -0.5134 32 1 1.6546 2.1324 0.0004 33 1 4.1146 2.1447 0.0010 34 1 5.3594 0.0224 0.0109 35 1 2.5718 -3.6964 0.0033 36 1 6.1172 -5.8491 0.0070 37 1 7.9585 -5.8013 -0.0088 38 1 10.3284 -4.5525 -0.9036 39 1 10.3338 -4.5557 0.8763 40 1 12.3575 -6.0915 -0.0229 41 1 14.7709 -9.9053 -0.0366 42 1 6.2895 -1.5605 0.0026 43 1 1.6557 -2.1312 0.0014 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000376208926.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:52:43 Heat of formation + Delta-G solvation = -12.047497 kcal Electronic energy + Delta-G solvation = -26724.066008 eV Core-core repulsion = 22733.942723 eV Total energy + Delta-G solvation = -3990.123285 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 339.137 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -41.01321 -39.77031 -39.04269 -38.23989 -34.76652 -34.26504 -33.83395 -32.67940 -32.51235 -31.83724 -29.81688 -28.05601 -27.38972 -25.13330 -24.47799 -23.80881 -22.51382 -21.24590 -20.30834 -19.72362 -18.87024 -18.11868 -17.37079 -16.86919 -16.57936 -15.83859 -15.57171 -15.54990 -15.34812 -14.96490 -14.82624 -14.56411 -14.20895 -14.18109 -14.01093 -13.71739 -13.66960 -13.15264 -13.12628 -12.81116 -12.57434 -12.57276 -12.48178 -12.22355 -12.18888 -11.68182 -11.40066 -11.27186 -10.67659 -10.54536 -10.39055 -10.09565 -9.85363 -9.74130 -9.66759 -9.15843 -9.04974 -8.83788 -8.52876 -8.34672 -6.44224 -3.97131 0.09917 0.57179 0.97654 1.42834 2.72999 2.96381 3.00671 3.03130 3.10699 3.33346 3.50385 3.72670 3.91723 4.00240 4.14327 4.30487 4.43927 4.44780 4.48144 4.51630 4.65208 4.78886 4.87942 4.88488 4.99368 5.10230 5.16052 5.17190 5.25773 5.38933 5.55029 5.57981 5.64121 5.69415 5.70985 5.72352 5.76497 6.02825 6.14448 6.18095 6.22356 6.37547 6.56044 7.39036 7.51260 7.56587 7.95322 8.14169 8.40544 8.77694 9.25483 9.57947 10.67755 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.031159 B = 0.001796 C = 0.001700 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 898.406742 B =15584.025135 C =16461.953351 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C -0.084 4.084 3 C -0.118 4.118 4 C -0.111 4.111 5 C -0.114 4.114 6 C -0.036 4.036 7 C -0.107 4.107 8 C 0.129 3.871 9 N -0.479 5.479 10 C 0.138 3.862 11 C -0.176 4.176 12 C 0.562 3.438 13 O -0.542 6.542 14 N -0.699 5.699 15 C 0.106 3.894 16 C 0.436 3.564 17 O -0.578 6.578 18 N -0.574 5.574 19 C -0.311 4.311 20 H 0.122 0.878 21 C 0.046 3.954 22 N -0.872 5.872 23 Si 0.879 3.121 24 H -0.268 1.268 25 H -0.274 1.274 26 H -0.267 1.267 27 C -0.009 4.009 28 C -0.110 4.110 29 H 0.071 0.929 30 H 0.067 0.933 31 H 0.068 0.932 32 H 0.123 0.877 33 H 0.126 0.874 34 H 0.128 0.872 35 H 0.162 0.838 36 H 0.167 0.833 37 H 0.412 0.588 38 H 0.088 0.912 39 H 0.088 0.912 40 H 0.375 0.625 41 H 0.276 0.724 42 H 0.151 0.849 43 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.728 21.779 0.121 31.478 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C -0.084 4.084 3 C -0.136 4.136 4 C -0.129 4.129 5 C -0.132 4.132 6 C -0.037 4.037 7 C -0.109 4.109 8 C -0.028 4.028 9 N -0.186 5.186 10 C -0.020 4.020 11 C -0.181 4.181 12 C 0.348 3.652 13 O -0.421 6.421 14 N -0.353 5.353 15 C -0.022 4.022 16 C 0.222 3.778 17 O -0.463 6.463 18 N -0.211 5.211 19 C -0.440 4.440 20 H 0.140 0.860 21 C -0.158 4.158 22 N -0.511 5.511 23 Si 0.705 3.295 24 H -0.194 1.194 25 H -0.199 1.199 26 H -0.192 1.192 27 C -0.035 4.035 28 C -0.128 4.128 29 H 0.090 0.910 30 H 0.086 0.914 31 H 0.087 0.913 32 H 0.141 0.859 33 H 0.144 0.856 34 H 0.146 0.854 35 H 0.179 0.821 36 H 0.184 0.816 37 H 0.252 0.748 38 H 0.106 0.894 39 H 0.106 0.894 40 H 0.208 0.792 41 H 0.087 0.913 42 H 0.168 0.832 43 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges -23.055 20.898 0.119 31.118 hybrid contribution 1.576 1.293 -0.014 2.038 sum -21.480 22.191 0.105 30.884 Atomic orbital electron populations 1.20813 0.90889 1.02994 1.02538 1.19856 0.96235 0.92895 0.99387 1.21135 0.94303 0.97598 1.00606 1.21100 0.94235 0.98017 0.99550 1.21286 1.00303 0.91662 0.99927 1.18539 0.92880 0.91393 1.00871 1.19717 0.93311 0.94135 1.03740 1.23121 1.00632 0.86654 0.92402 1.67723 1.09490 1.28958 1.12450 1.23226 0.89517 0.97998 0.91273 1.20939 0.94564 0.95213 1.07392 1.17920 0.86634 0.83678 0.76991 1.90766 1.66583 1.34123 1.50587 1.45600 1.07506 1.08753 1.73475 1.21036 0.80584 0.96870 1.03672 1.19579 0.83534 0.89355 0.85338 1.90543 1.51360 1.48609 1.55782 1.42113 1.05345 1.08490 1.65186 1.19447 0.93590 0.82162 1.48774 0.86006 1.25068 0.97151 0.96559 0.97056 1.69616 1.17162 1.16429 1.47895 0.86673 0.82066 0.81612 0.79151 1.19373 1.19938 1.19232 1.21780 0.92977 0.98153 0.90633 1.21074 0.92843 0.98020 1.00851 0.90985 0.91420 0.91334 0.85934 0.85601 0.85445 0.82085 0.81606 0.74831 0.89356 0.89352 0.79217 0.91331 0.83191 0.85542 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.52 10.01 36.01 0.36 -0.16 16 2 C -0.08 -0.57 5.88 -104.67 -0.61 -1.19 16 3 C -0.12 -0.79 9.69 -39.52 -0.38 -1.18 16 4 C -0.11 -0.80 10.03 -39.63 -0.40 -1.20 16 5 C -0.11 -0.96 9.44 -39.25 -0.37 -1.33 16 6 C -0.04 -0.32 5.88 -104.90 -0.62 -0.94 16 7 C -0.11 -1.07 5.89 -104.80 -0.62 -1.69 16 8 C 0.13 1.28 10.59 -17.12 -0.18 1.09 16 9 N -0.48 -5.68 10.33 -12.64 -0.13 -5.81 16 10 C 0.14 1.65 10.71 -17.10 -0.18 1.47 16 11 C -0.18 -2.22 5.89 -104.86 -0.62 -2.84 16 12 C 0.56 8.39 7.78 -12.33 -0.10 8.30 16 13 O -0.54 -9.33 16.42 5.32 0.09 -9.24 16 14 N -0.70 -10.76 5.48 -62.43 -0.34 -11.10 16 15 C 0.11 1.76 6.15 -5.19 -0.03 1.73 16 16 C 0.44 9.30 7.85 -10.98 -0.09 9.22 16 17 O -0.58 -14.20 15.24 5.55 0.08 -14.11 16 18 N -0.57 -13.04 5.09 -10.97 -0.06 -13.09 16 19 C -0.31 -8.45 10.16 -14.94 -0.15 -8.60 16 20 H 0.12 3.77 7.39 -52.49 -0.39 3.38 16 21 C 0.05 1.22 5.50 -17.47 -0.10 1.12 16 22 N -0.87 -24.63 13.96 55.50 0.77 -23.86 16 23 Si 0.88 18.71 27.74 -169.99 -4.71 13.99 16 24 H -0.27 -5.62 7.11 56.52 0.40 -5.21 16 25 H -0.27 -5.87 7.11 56.52 0.40 -5.47 16 26 H -0.27 -5.18 6.52 56.52 0.37 -4.82 16 27 C -0.01 -0.11 9.07 -38.53 -0.35 -0.46 16 28 C -0.11 -0.83 9.09 -39.26 -0.36 -1.19 16 29 H 0.07 0.28 8.14 -51.93 -0.42 -0.14 16 30 H 0.07 0.25 8.08 -51.93 -0.42 -0.17 16 31 H 0.07 0.26 8.08 -51.93 -0.42 -0.16 16 32 H 0.12 0.58 8.06 -52.49 -0.42 0.15 16 33 H 0.13 0.66 8.06 -52.49 -0.42 0.24 16 34 H 0.13 0.98 6.27 -52.48 -0.33 0.65 16 35 H 0.16 1.11 6.21 -52.48 -0.33 0.79 16 36 H 0.17 1.82 6.41 -52.48 -0.34 1.48 16 37 H 0.41 6.19 5.49 -40.82 -0.22 5.96 16 38 H 0.09 1.36 8.14 -51.93 -0.42 0.94 16 39 H 0.09 1.35 8.14 -51.93 -0.42 0.93 16 40 H 0.37 7.48 5.76 -40.82 -0.24 7.24 16 41 H 0.28 7.19 8.31 -40.82 -0.34 6.85 16 42 H 0.15 1.59 5.99 -52.49 -0.31 1.27 16 43 H 0.13 0.72 6.23 -52.48 -0.33 0.39 16 LS Contribution 369.36 15.07 5.57 5.57 Total: -1.00 -33.05 369.36 -8.12 -41.17 By element: Atomic # 1 Polarization: 18.91 SS G_CDS: -4.60 Total: 14.31 kcal Atomic # 6 Polarization: 6.96 SS G_CDS: -4.79 Total: 2.18 kcal Atomic # 7 Polarization: -54.11 SS G_CDS: 0.25 Total: -53.86 kcal Atomic # 8 Polarization: -23.53 SS G_CDS: 0.17 Total: -23.36 kcal Atomic # 14 Polarization: 18.71 SS G_CDS: -4.71 Total: 13.99 kcal Total LS contribution 5.57 Total: 5.57 kcal Total: -33.05 -8.12 -41.17 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000376208926.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.126 kcal (2) G-P(sol) polarization free energy of solvation -33.053 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.927 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.121 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.174 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.047 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds