Wall clock time and date at job start Tue Mar 31 2020 22:32:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86800 * 120.00014 * 2 1 4 4 H 1.48497 * 109.47370 * 179.97438 * 3 2 1 5 5 H 1.48505 * 109.46797 * 299.99727 * 3 2 1 6 6 H 1.48503 * 109.47242 * 59.99441 * 3 2 1 7 7 C 1.37882 * 120.00322 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00318 * 180.02562 * 7 2 1 9 9 C 1.50705 * 119.99597 * 0.02562 * 7 2 1 10 10 N 1.46493 * 109.46704 * 179.97438 * 9 7 2 11 11 C 1.34777 * 119.99888 * 180.02562 * 10 9 7 12 12 O 1.21589 * 120.00133 * 359.97438 * 11 10 9 13 13 N 1.34778 * 120.00246 * 180.02562 * 11 10 9 14 14 C 1.46499 * 119.99876 * 180.02562 * 13 11 10 15 15 C 1.53006 * 109.46831 * 185.37913 * 14 13 11 16 16 H 1.09003 * 109.47296 * 185.90197 * 15 14 13 17 17 C 1.50704 * 109.46881 * 65.90742 * 15 14 13 18 18 C 1.33381 * 125.20410 * 100.00128 * 17 15 14 19 19 C 1.38423 * 114.91967 * 179.97438 * 18 17 15 20 20 C 1.33386 * 114.92433 * 359.97438 * 19 18 17 21 21 S 1.75885 * 109.59128 * 359.75885 * 20 19 18 22 22 N 1.46897 * 109.47341 * 305.90327 * 15 14 13 23 23 C 1.47015 * 111.00070 * 182.41414 * 22 15 14 24 24 C 1.53100 * 109.29324 * 182.37089 * 23 22 15 25 25 O 1.43025 * 109.25540 * 303.22662 * 24 23 22 26 26 C 1.43009 * 113.78053 * 58.59992 * 25 24 23 27 27 C 1.47008 * 111.00059 * 306.05543 * 22 15 14 28 28 H 0.96998 * 120.00163 * 0.02562 * 1 2 3 29 29 H 1.08998 * 109.46977 * 59.99974 * 9 7 2 30 30 H 1.08996 * 109.47143 * 299.99476 * 9 7 2 31 31 H 0.97006 * 120.00520 * 0.02562 * 10 9 7 32 32 H 0.96993 * 119.99875 * 359.97438 * 13 11 10 33 33 H 1.09003 * 109.47269 * 65.38179 * 14 13 11 34 34 H 1.09002 * 109.47192 * 305.37654 * 14 13 11 35 35 H 1.08003 * 122.54231 * 359.95272 * 18 17 15 36 36 H 1.07999 * 122.53977 * 180.02562 * 19 18 17 37 37 H 1.08003 * 125.20613 * 180.02562 * 20 19 18 38 38 H 1.08992 * 109.50937 * 302.33133 * 23 22 15 39 39 H 1.09005 * 109.49955 * 62.42050 * 23 22 15 40 40 H 1.09000 * 109.50611 * 63.10978 * 24 23 22 41 41 H 1.08993 * 109.50628 * 183.24197 * 24 23 22 42 42 H 1.08998 * 109.51189 * 181.41963 * 26 25 24 43 43 H 1.09003 * 109.54372 * 61.31099 * 26 25 24 44 44 H 1.09000 * 109.50857 * 297.54060 * 27 22 15 45 45 H 1.09008 * 109.51063 * 57.62759 * 27 22 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7091 1.3464 0.0006 5 1 1.8903 2.3964 -1.2126 6 1 1.8903 2.3965 1.2124 7 6 2.0046 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2510 -2.4992 0.0005 10 7 2.2030 -3.6126 0.0005 11 6 1.7538 -4.8833 0.0000 12 8 0.5584 -5.1056 0.0000 13 7 2.6297 -5.9077 0.0005 14 6 2.1413 -7.2889 -0.0006 15 6 3.3252 -8.2485 0.1355 16 1 2.9748 -9.2753 0.0297 17 6 3.9616 -8.0722 1.4902 18 6 3.7597 -8.8650 2.5437 19 6 4.4546 -8.5057 3.6857 20 6 5.2212 -7.4215 3.5594 21 16 5.0908 -6.7944 1.9214 22 7 4.3138 -7.9582 -0.9115 23 6 5.4412 -8.8996 -0.8473 24 6 6.4736 -8.5260 -1.9143 25 8 5.8438 -8.5206 -3.1985 26 6 4.7419 -7.6143 -3.2965 27 6 3.6923 -7.9797 -2.2435 28 1 -0.4850 0.8400 -0.0004 29 1 0.6247 -2.5571 -0.8897 30 1 0.6241 -2.5568 0.8903 31 1 3.1568 -3.4354 0.0009 32 1 3.5833 -5.7305 0.0009 33 1 1.6176 -7.4884 -0.9355 34 1 1.4583 -7.4335 0.8365 35 1 3.1035 -9.7221 2.5085 36 1 4.3822 -9.0617 4.6087 37 1 5.8322 -6.9964 4.3420 38 1 5.9024 -8.8485 0.1390 39 1 5.0805 -9.9121 -1.0285 40 1 6.8741 -7.5348 -1.7020 41 1 7.2834 -9.2554 -1.9084 42 1 4.3001 -7.6846 -4.2905 43 1 5.0909 -6.5961 -3.1246 44 1 3.3038 -8.9775 -2.4478 45 1 2.8763 -7.2577 -2.2762 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000426449387.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:32:34 Heat of formation + Delta-G solvation = -27.634045 kcal Electronic energy + Delta-G solvation = -27757.169606 eV Core-core repulsion = 23901.814389 eV Total energy + Delta-G solvation = -3855.355217 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -40.28787 -39.00352 -38.09871 -36.52209 -34.23636 -33.71122 -32.26179 -31.55912 -31.02497 -28.34271 -27.21171 -26.04962 -24.70497 -23.64906 -22.60861 -21.72720 -20.60543 -20.11219 -19.28679 -18.03748 -17.67284 -16.74486 -16.28961 -16.01349 -15.79791 -15.49681 -15.33306 -15.15786 -14.81781 -14.62755 -14.53602 -14.09128 -13.60884 -13.58212 -13.01082 -12.96715 -12.85284 -12.47476 -12.32982 -12.19379 -12.02085 -11.91254 -11.66426 -11.58480 -11.27156 -10.88994 -10.87485 -10.83954 -10.75686 -10.26379 -9.95240 -9.36050 -9.30476 -8.85639 -8.79261 -8.71522 -8.62785 -8.45923 -7.67934 -6.11495 -4.17413 0.85103 1.52495 1.94956 2.58155 3.23745 3.26595 3.33638 3.36763 3.56170 3.64357 4.02997 4.29730 4.37016 4.61553 4.64890 4.68961 4.88911 4.93214 4.99019 5.02358 5.07284 5.24778 5.26775 5.28381 5.32052 5.40030 5.40315 5.51813 5.53126 5.66388 5.72660 5.81700 5.90942 6.12561 6.26961 6.53829 6.59076 6.88635 6.95187 7.20314 7.58832 7.62141 7.62928 7.97628 8.11211 8.82456 9.02144 9.39988 9.54541 10.98868 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.011027 B = 0.003244 C = 0.002916 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2538.545006 B = 8628.896488 C = 9601.184878 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.886 5.886 2 C 0.063 3.937 3 Si 0.903 3.097 4 H -0.272 1.272 5 H -0.282 1.282 6 H -0.283 1.283 7 C -0.539 4.539 8 H 0.063 0.937 9 C 0.268 3.732 10 N -0.729 5.729 11 C 0.693 3.307 12 O -0.605 6.605 13 N -0.746 5.746 14 C 0.150 3.850 15 C 0.143 3.857 16 H 0.075 0.925 17 C -0.171 4.171 18 C -0.138 4.138 19 C -0.137 4.137 20 C -0.225 4.225 21 S 0.147 5.853 22 N -0.531 5.531 23 C 0.017 3.983 24 C 0.065 3.935 25 O -0.387 6.387 26 C 0.065 3.935 27 C 0.014 3.986 28 H 0.264 0.736 29 H 0.024 0.976 30 H 0.024 0.976 31 H 0.386 0.614 32 H 0.395 0.605 33 H 0.067 0.933 34 H 0.075 0.925 35 H 0.136 0.864 36 H 0.136 0.864 37 H 0.161 0.839 38 H 0.088 0.912 39 H 0.043 0.957 40 H 0.061 0.939 41 H 0.096 0.904 42 H 0.099 0.901 43 H 0.063 0.937 44 H 0.045 0.955 45 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.397 -21.479 1.010 25.877 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.524 5.524 2 C -0.140 4.140 3 Si 0.730 3.270 4 H -0.197 1.197 5 H -0.208 1.208 6 H -0.209 1.209 7 C -0.578 4.578 8 H 0.081 0.919 9 C 0.146 3.854 10 N -0.381 5.381 11 C 0.393 3.607 12 O -0.484 6.484 13 N -0.405 5.405 14 C 0.024 3.976 15 C 0.033 3.967 16 H 0.093 0.907 17 C -0.289 4.289 18 C -0.169 4.169 19 C -0.167 4.167 20 C -0.361 4.361 21 S 0.411 5.589 22 N -0.257 5.257 23 C -0.111 4.111 24 C -0.012 4.012 25 O -0.305 6.305 26 C -0.012 4.012 27 C -0.114 4.114 28 H 0.074 0.926 29 H 0.042 0.958 30 H 0.042 0.958 31 H 0.218 0.782 32 H 0.230 0.770 33 H 0.085 0.915 34 H 0.093 0.907 35 H 0.154 0.846 36 H 0.154 0.846 37 H 0.179 0.821 38 H 0.107 0.893 39 H 0.062 0.938 40 H 0.080 0.920 41 H 0.114 0.886 42 H 0.117 0.883 43 H 0.081 0.919 44 H 0.064 0.936 45 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges 13.990 -19.923 0.168 24.345 hybrid contribution 0.167 -0.773 1.109 1.362 sum 14.157 -20.696 1.277 25.107 Atomic orbital electron populations 1.69988 1.06081 1.27068 1.49228 1.24938 0.94884 0.99352 0.94849 0.86380 0.79849 0.83083 0.77690 1.19657 1.20848 1.20863 1.21275 0.93301 0.90444 1.52731 0.91912 1.18958 0.87778 0.81115 0.97508 1.45682 1.10707 1.04399 1.77273 1.16142 0.85109 0.81094 0.78363 1.90866 1.14301 1.84307 1.58952 1.45014 1.09088 1.04296 1.82104 1.21116 0.93569 0.80545 1.02384 1.20423 0.91088 0.98780 0.86374 0.90748 1.24286 1.05027 1.00744 0.98893 1.20049 1.02824 1.01715 0.92317 1.20069 0.98936 0.98207 0.99534 1.25798 1.07155 1.01931 1.01196 1.84415 1.41404 1.29094 1.03961 1.62166 1.09179 1.51084 1.03259 1.22832 0.93019 0.94196 1.01029 1.22643 0.94231 1.02053 0.82282 1.87978 1.46988 1.63364 1.32210 1.22671 0.86373 0.93513 0.98645 1.22905 0.98441 1.01792 0.88234 0.92584 0.95824 0.95833 0.78230 0.76965 0.91495 0.90715 0.84608 0.84597 0.82098 0.89340 0.93834 0.92033 0.88571 0.88277 0.91873 0.93643 0.88340 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.37 13.29 55.43 0.74 -25.64 16 2 C 0.06 1.77 5.46 -17.82 -0.10 1.67 16 3 Si 0.90 21.04 29.54 -169.99 -5.02 16.02 16 4 H -0.27 -6.13 7.11 56.52 0.40 -5.73 16 5 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 6 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 7 C -0.54 -14.82 9.28 -34.44 -0.32 -15.14 16 8 H 0.06 1.62 7.60 -52.49 -0.40 1.22 16 9 C 0.27 7.26 5.43 -5.19 -0.03 7.24 16 10 N -0.73 -15.95 5.55 -66.42 -0.37 -16.32 16 11 C 0.69 14.51 8.57 -86.92 -0.74 13.77 16 12 O -0.60 -15.23 16.34 5.29 0.09 -15.14 16 13 N -0.75 -11.43 5.00 -65.22 -0.33 -11.76 16 14 C 0.15 1.94 4.54 -4.04 -0.02 1.92 16 15 C 0.14 1.41 2.17 -68.86 -0.15 1.26 16 16 H 0.07 0.64 8.12 -51.93 -0.42 0.22 16 17 C -0.17 -1.75 3.90 -36.00 -0.14 -1.89 16 18 C -0.14 -1.32 10.04 -41.21 -0.41 -1.73 16 19 C -0.14 -1.27 10.18 -41.21 -0.42 -1.69 16 20 C -0.22 -2.16 11.23 29.04 0.33 -1.83 16 21 S 0.15 1.54 21.10 -107.50 -2.27 -0.73 16 22 N -0.53 -4.97 3.68 -227.71 -0.84 -5.81 16 23 C 0.02 0.14 5.44 -3.71 -0.02 0.12 16 24 C 0.07 0.54 7.01 37.21 0.26 0.80 16 25 O -0.39 -3.98 10.82 -35.23 -0.38 -4.36 16 26 C 0.06 0.60 7.01 37.21 0.26 0.87 16 27 C 0.01 0.13 5.19 -3.71 -0.02 0.11 16 28 H 0.26 7.36 8.31 -40.82 -0.34 7.02 16 29 H 0.02 0.71 8.14 -51.93 -0.42 0.29 16 30 H 0.02 0.71 8.14 -51.93 -0.42 0.29 16 31 H 0.39 7.38 8.34 -40.82 -0.34 7.04 16 32 H 0.40 5.46 6.55 -40.82 -0.27 5.20 16 33 H 0.07 0.86 6.64 -51.93 -0.34 0.52 16 34 H 0.07 1.07 8.13 -51.93 -0.42 0.65 16 35 H 0.14 1.07 8.06 -52.48 -0.42 0.65 16 36 H 0.14 1.00 8.06 -52.49 -0.42 0.58 16 37 H 0.16 1.24 8.06 -52.48 -0.42 0.82 16 38 H 0.09 0.72 6.67 -51.93 -0.35 0.38 16 39 H 0.04 0.36 8.14 -51.93 -0.42 -0.06 16 40 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 41 H 0.10 0.63 8.14 -51.93 -0.42 0.20 16 42 H 0.10 0.80 8.14 -51.93 -0.42 0.38 16 43 H 0.06 0.62 8.14 -51.93 -0.42 0.19 16 44 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 45 H 0.10 1.05 6.13 -51.92 -0.32 0.73 16 LS Contribution 377.86 15.07 5.69 5.69 Total: -1.00 -33.34 377.86 -10.85 -44.20 By element: Atomic # 1 Polarization: 15.02 SS G_CDS: -6.65 Total: 8.37 kcal Atomic # 6 Polarization: 6.99 SS G_CDS: -1.52 Total: 5.47 kcal Atomic # 7 Polarization: -58.73 SS G_CDS: -0.80 Total: -59.52 kcal Atomic # 8 Polarization: -19.20 SS G_CDS: -0.29 Total: -19.50 kcal Atomic # 14 Polarization: 21.04 SS G_CDS: -5.02 Total: 16.02 kcal Atomic # 16 Polarization: 1.54 SS G_CDS: -2.27 Total: -0.73 kcal Total LS contribution 5.69 Total: 5.69 kcal Total: -33.34 -10.85 -44.20 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000426449387.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.565 kcal (2) G-P(sol) polarization free energy of solvation -33.345 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.780 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.854 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.199 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.634 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds